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• a() : gmx::UniformIntDistribution< IntType >::param_type , gmx::UniformIntDistribution< IntType > , gmx::UniformRealDistribution< RealType > , gmx::UniformRealDistribution< RealType >::param_type
• absoluteTolerance() : gmx::test::FloatingPointTolerance
• AbstractAnalysisArrayData() : gmx::AbstractAnalysisArrayData
• AbstractAnalysisData() : gmx::AbstractAnalysisData
• AbstractAverageHistogram() : gmx::AbstractAverageHistogram
• AbstractOption() : gmx::AbstractOption
• AbstractOptionSection() : gmx::AbstractOptionSection
• AbstractOptionSectionHandle() : gmx::AbstractOptionSectionHandle
• AbstractOptionStorage() : gmx::AbstractOptionStorage
• AbstractPlotModule() : gmx::AbstractPlotModule
• acceptOptions() : gmx::OptionsModifyingIterator , gmx::OptionsIterator
• acceptSections() : gmx::OptionsIterator , gmx::OptionsModifyingIterator
• add() : gmx::OptionManagerContainer
• addArray() : gmx::KeyValueTreeObjectBuilder
• addBehavior() : gmx::OptionsBehaviorCollection
• addCastConversion() : gmx::OptionValueConverterSimple< OutType >
• addColumn() : gmx::TextTableFormatter
• addColumnHelpTextBlock() : gmx::TextTableFormatter
• addColumnLine() : gmx::TextTableFormatter
• addColumnModule() : gmx::AbstractAnalysisData
• addConverter() : gmx::OptionValueConverterSimple< OutType >
• addCurrentExceptionAsNested() : gmx::ExceptionInitializer
• addDefaultFileNameOption() : gmx::FileNameOptionManager
• addExistingFile() : gmx::test::TestFileInputRedirector
• addForceProvider() : ForceProviders
• addFrame() : gmx::test::AnalysisDataTestInput
• addFrameWithValueAndError() : gmx::test::AnalysisDataTestInput
• addFrameWithValues() : gmx::test::AnalysisDataTestInput
• addGroup() : gmx::AbstractOptionSectionHandle , gmx::IOptionsContainer , gmx::Options
• addHelpTopic() : gmx::CommandLineModuleManager
• addLink() : gmx::HelpLinks
• addManager() : gmx::Options
• addModule() : gmx::AbstractAnalysisData , gmx::AnalysisDataModuleManager , gmx::CommandLineModuleManager , gmx::CommandLineModuleGroup
• addModuleCMain() : gmx::CommandLineModuleManager
• addModuleCMainWithSettings() : gmx::CommandLineModuleManager
• addModuleGroup() : gmx::CommandLineModuleManager
• addModuleWithDescription() : gmx::CommandLineModuleGroup
• addNested() : gmx::ExceptionInitializer
• addObject() : gmx::KeyValueTreeObjectArrayBuilder , gmx::KeyValueTreeObjectBuilder
• addObjectArray() : gmx::KeyValueTreeObjectBuilder
• addOption() : gmx::IOptionsContainer , gmx::test::CommandLine
• addOptionImpl() : gmx::IOptionsContainer
• addOptionsBehavior() : gmx::ICommandLineOptionsModuleSettings
• addPointSet() : gmx::test::AnalysisDataTestInputFrame
• addPointSetWithValueAndError() : gmx::test::AnalysisDataTestInputFrame
• addPointSetWithValues() : gmx::test::AnalysisDataTestInputFrame
• addRawValue() : gmx::KeyValueTreeObjectBuilder
• addReferenceCheckerModule() : gmx::test::AnalysisDataTestFixture
• address() : gmx::Allocator< T, AllocationPolicy >
• addRule() : gmx::IKeyValueTreeTransformRules
• addSection() : gmx::IOptionsContainerWithSections
• addSectionImpl() : gmx::IOptionsContainerWithSections
• addStaticCheckerModule() : gmx::test::AnalysisDataTestFixture
• addStaticColumnCheckerModule() : gmx::test::AnalysisDataTestFixture
• addStaticParallelCheckerModule() : gmx::test::AnalysisDataTestFixture
• addStaticStorageCheckerModule() : gmx::test::AnalysisDataTestFixture
• addSubTopic() : gmx::AbstractCompositeHelpTopic
• addTargetFile() : gmx::LoggerBuilder
• addTargetStream() : gmx::LoggerBuilder
• addTimeUnitOption() : gmx::TimeUnitBehavior
• addUniformArray() : gmx::KeyValueTreeObjectBuilder
• addValue() : gmx::test::AnalysisDataTestInputPointSet , gmx::OptionStorageTemplate< T > , gmx::KeyValueTreeUniformArrayBuilder< T > , gmx::KeyValueTreeObjectBuilder
• addValueWithError() : gmx::test::AnalysisDataTestInputPointSet
• addVirialContribution() : gmx::ForceWithVirial
• adjustInputrecBasedOnModules() : gmx::MDModules
• AfterFrom() : gmx::KeyValueTreeTransformRuleBuilder::AfterFrom< FromType >
• alignment() : gmx::HostAllocationPolicy , gmx::AlignedAllocationPolicy , gmx::PageAlignedAllocationPolicy
• allocate() : gmx::Allocator< T, AllocationPolicy >
• allocateValues() : gmx::AbstractAnalysisArrayData
• Allocator() : gmx::Allocator< T, AllocationPolicy >
• allowedValues() : gmx::StringOptionInfo , gmx::EnumOptionInfo
• allowEmpty() : gmx::SelectionOption
• allowMissing() : gmx::FileNameOption , gmx::FileNameOptionInfo
• allowMultiple() : gmx::OptionTemplate< T, U >
• allowPositionalArguments() : gmx::CommandLineParser
• allPresent() : gmx::AnalysisDataPointSetRef , gmx::AnalysisDataFrameRef
• allSizes() : gmx::UnionFinder , gmx::MappedUnionFinder
• alpha() : gmx::GammaDistribution< RealType >::param_type , gmx::GammaDistribution< RealType >
• AnalysisArrayData() : gmx::AnalysisArrayData
• AnalysisData() : gmx::AnalysisData
• AnalysisDataBinAverageModule() : gmx::AnalysisDataBinAverageModule
• AnalysisDataFrameHeader() : gmx::AnalysisDataFrameHeader
• AnalysisDataFrameRef() : gmx::AnalysisDataFrameRef
• AnalysisDataHandle() : gmx::AnalysisDataHandle
• AnalysisDataParallelOptions() : gmx::AnalysisDataParallelOptions
• AnalysisDataPlotModule() : gmx::AnalysisDataPlotModule
• AnalysisDataPlotSettings() : gmx::AnalysisDataPlotSettings
• AnalysisDataPointSetRef() : gmx::AnalysisDataPointSetRef
• AnalysisDataSimpleHistogramModule() : gmx::AnalysisDataSimpleHistogramModule
• AnalysisDataStorage() : gmx::AnalysisDataStorage
• AnalysisDataTestInput() : gmx::test::AnalysisDataTestInput
• AnalysisDataValue() : gmx::AnalysisDataValue
• AnalysisDataVectorPlotModule() : gmx::AnalysisDataVectorPlotModule
• AnalysisDataWeightedHistogramModule() : gmx::AnalysisDataWeightedHistogramModule
• AnalysisHistogramSettings() : gmx::AnalysisHistogramSettings
• AnalysisHistogramSettingsInitializer() : gmx::AnalysisHistogramSettingsInitializer
• AnalysisNeighborhood() : gmx::AnalysisNeighborhood
• AnalysisNeighborhoodPair() : gmx::AnalysisNeighborhoodPair
• AnalysisNeighborhoodPairSearch() : gmx::AnalysisNeighborhoodPairSearch
• AnalysisNeighborhoodPositions() : gmx::AnalysisNeighborhoodPositions
• AnalysisNeighborhoodSearch() : gmx::AnalysisNeighborhoodSearch
• analyzeFrame() : gmx::TrajectoryAnalysisModule
• APIError() : gmx::APIError
• append() : gmx::test::CommandLine , gmx::KeyValueTreePath , gmx::MessageStringCollector , gmx::KeyValueTreePath , gmx::test::CommandLine
• appendLegend() : gmx::AbstractPlotModule
• appendText() : gmx::LogEntryWriter
• appendTextFormatted() : gmx::LogEntryWriter
• appendValue() : gmx::AbstractOptionStorage , gmx::OptionsAssigner
• applyBiasForcesAndUpdateBias() : gmx::Awh
• applyModule() : gmx::AnalysisDataModuleManager , gmx::AbstractAnalysisData
• arg() : gmx::test::CommandLine
• argc() : gmx::test::CommandLine
• argv() : gmx::test::CommandLine
• ArrayRef() : gmx::ArrayRef< T >
• arrayRefFromArray() : gmx::ArrayRef< T >
• as_vec() : gmx::BasicVector< ValueType >
• asAbsolute() : gmx::test::FloatingPointDifference
• asParagraph() : gmx::LogEntryWriter
• assignOptionsToModules() : gmx::MDModules
• asUlps() : gmx::test::FloatingPointDifference
• at() : gmx::ArrayRef< T >
• atomCount() : gmx::Selection , gmx::SelectionPosition
• atomIndices() : gmx::Selection , gmx::SelectionPosition
• average() : gmx::AnalysisDataAverageModule
• averager() : gmx::AnalysisDataSimpleHistogramModule , gmx::AnalysisDataWeightedHistogramModule
• Awh() : gmx::Awh