Gromacs
5.1.5
Main Page
Modules
Other Docs
Namespaces
Classes
Files
Examples
Namespace List
Namespace Members
All
Functions
Variables
Typedefs
Enumerations
Enumerator
a
c
d
e
f
g
h
i
j
m
p
q
r
s
t
v
w
z
All
Classes
Namespaces
Files
Functions
Variables
Typedefs
Enumerations
Enumerator
Friends
Macros
Groups
Pages
- a -
add_rec() :
gmx::analysismodules::anonymous_namespace{sasa.cpp}
addUlps() :
anonymous_namespace{testasserts_tests.cpp}
as_rvec_array() :
gmx
as_vec_array() :
gmx
assertEqualWithinTolerance() :
gmx::test
assertHandler() :
gmx::internal
- c -
calc_one_bond() :
anonymous_namespace{listed-forces.cpp}
calc_vec() :
gmx::analysismodules::anonymous_namespace{angle.cpp}
calculateUlpDifference() :
gmx::test::anonymous_namespace{testasserts.cpp}
checkAllPairsFound() :
anonymous_namespace{nbsearch.cpp}
checkExternalGroups() :
gmx::anonymous_namespace{selectioncollection.cpp}
checkFrame() :
gmx::test::anonymous_namespace{mock_datamodule.cpp}
checkHeader() :
gmx::test::anonymous_namespace{mock_datamodule.cpp}
checkPoints() :
gmx::test::anonymous_namespace{mock_datamodule.cpp}
checkReferenceDataPoint() :
gmx::test::anonymous_namespace{mock_datamodule.cpp}
checkSelections() :
gmx::analysismodules::anonymous_namespace{distance.cpp}
checkTextImpl() :
gmx::test::anonymous_namespace{stringtest.cpp}
computeAreas() :
gmx::analysismodules::anonymous_namespace{sasa.cpp}
computeBoundingBox() :
gmx::anonymous_namespace{nbsearch.cpp}
computeDisplacements() :
anonymous_namespace{shake.cpp}
computeDistancesSquared() :
anonymous_namespace{shake.cpp}
computeHalfOfReducedMasses() :
anonymous_namespace{shake.cpp}
computeMassesAndCharges() :
gmx::internal::anonymous_namespace{selection.cpp}
connolly_plot() :
gmx::analysismodules::anonymous_namespace{sasa.cpp}
contains() :
gmx
countLeadingSpace() :
gmx::anonymous_namespace{rstparser.cpp}
createSelectionHelpTopic() :
gmx
- d -
defaultFileInputRedirector() :
gmx
defaultFileOutputRedirector() :
gmx
defaultOptionValue() :
gmx::anonymous_namespace{cmdlinehelpwriter.cpp}
descriptionWithOptionDetails() :
gmx::anonymous_namespace{cmdlinehelpwriter.cpp}
disableNice() :
gmx::test::anonymous_namespace{cmdlinemodulemanagertest.cpp}
do_conect() :
gmx::analysismodules::anonymous_namespace{sasa.cpp}
do_fbposres_cylinder() :
anonymous_namespace{position-restraints.cpp}
- e -
endsWith() :
gmx
evaluate_single() :
anonymous_namespace{pairs.cpp}
expandValueForPositions() :
anonymous_namespace{evaluate.cpp}
expandVector() :
anonymous_namespace{basicoptions.cpp}
- f -
fatalError() :
gmx::internal
fbposres() :
anonymous_namespace{position-restraints.cpp}
fileOptionFlagsAsString() :
gmx::anonymous_namespace{cmdlinehelpwriter.cpp}
finalize() :
gmx
finalizeForCommandLine() :
gmx
finalizeTestUtils() :
gmx::test
findExistingExtension() :
gmx::anonymous_namespace{filenameoptionmanager.cpp}
findFallbackInstallationPrefixPath() :
gmx::anonymous_namespace{cmdlineprogramcontext.cpp}
findFullBinaryPath() :
gmx::anonymous_namespace{cmdlineprogramcontext.cpp}
findInstallationPrefixPath() :
gmx::anonymous_namespace{cmdlineprogramcontext.cpp}
floatingPointToBiasedInteger() :
gmx::test::anonymous_namespace{testasserts.cpp}
formatAndJoin() :
gmx
formatCurrentErrorContext() :
anonymous_namespace{parsetree.cpp}
formatExceptionMessageInternal() :
gmx::anonymous_namespace{exceptions.cpp}
formatExceptionMessageToFile() :
gmx
formatExceptionMessageToString() :
gmx
formatOptionNameAndValue() :
gmx::anonymous_namespace{cmdlinehelpwriter.cpp}
formatString() :
gmx
formatVector() :
anonymous_namespace{nbsearch.cpp}
free_energy_evaluate_single() :
anonymous_namespace{pairs.cpp}
- g -
getDefaultXvgFormat() :
gmx::anonymous_namespace{pargs.cpp}
getErrorCodeString() :
gmx
getLibraryFileFinder() :
gmx
getProgramContext() :
gmx
getReferenceDataMode() :
anonymous_namespace{refdata.cpp}
- h -
histogramFromBins() :
gmx
histogramFromRange() :
gmx
- i -
ignoreValueHelper() :
gmx::internal
init() :
gmx
initDifference() :
gmx::test::anonymous_namespace{testasserts.cpp}
initForCommandLine() :
gmx
initMPIOutput() :
gmx::test
initOptionsBasic() :
anonymous_namespace{cmdlinehelpmodule.cpp}
initProgramLinks() :
gmx::anonymous_namespace{cmdlinehelpmodule.cpp}
initReferenceData() :
gmx::test
initSelectionGroups() :
gmx::analysismodules::anonymous_namespace{pairdist.cpp}
initTestOptions() :
gmx::test
initTestUtils() :
gmx::test
isAcceptableLibraryPath() :
gmx::anonymous_namespace{cmdlineprogramcontext.cpp}
isAcceptableLibraryPathPrefix() :
gmx::anonymous_namespace{cmdlineprogramcontext.cpp}
isDefined() :
anonymous_namespace{histogram.cpp}
isDirSeparator() :
anonymous_namespace{path.cpp}
isNullOrEmpty() :
gmx
isPairInteraction() :
anonymous_namespace{listed-forces.cpp}
isTitleUnderline() :
gmx::anonymous_namespace{rstparser.cpp}
isWordChar() :
gmx::anonymous_namespace{stringutil.cpp}
- j -
joinStrings() :
gmx
- m -
move() :
gmx
- p -
posres() :
anonymous_namespace{position-restraints.cpp}
posres_dx() :
anonymous_namespace{position-restraints.cpp}
printBinaryInformation() :
gmx
printCurrentStatus() :
gmx::anonymous_namespace{selectioncollection.cpp}
printFatalErrorFooter() :
gmx::internal
printFatalErrorHeader() :
gmx::internal
printFatalErrorMessage() :
gmx
printFatalErrorMessageLine() :
gmx::internal
printHelp() :
gmx::anonymous_namespace{selectioncollection.cpp}
,
gmx::test::anonymous_namespace{testinit.cpp}
processExceptionAtExit() :
gmx
processExceptionAtExitForCommandLine() :
gmx
promptLine() :
gmx::anonymous_namespace{selectioncollection.cpp}
- q -
quoteIfNecessary() :
gmx::anonymous_namespace{cmdlineprogramcontext.cpp}
- r -
reduce_thread_force_buffer() :
anonymous_namespace{listed-forces.cpp}
reduce_thread_forces() :
anonymous_namespace{listed-forces.cpp}
ref_acos() :
gmx::test::anonymous_namespace{simd_math.cpp}
ref_asin() :
gmx::test::anonymous_namespace{simd_math.cpp}
ref_atan() :
gmx::test::anonymous_namespace{simd_math.cpp}
ref_cos() :
gmx::test::anonymous_namespace{simd_math.cpp}
ref_erf() :
gmx::test::anonymous_namespace{simd_math.cpp}
ref_erfc() :
gmx::test::anonymous_namespace{simd_math.cpp}
ref_exp() :
gmx::test::anonymous_namespace{simd_math.cpp}
ref_exp2() :
gmx::test::anonymous_namespace{simd_math.cpp}
ref_inv() :
gmx::test::anonymous_namespace{simd_math.cpp}
ref_invsqrt() :
gmx::test::anonymous_namespace{simd4_math.cpp}
,
gmx::test::anonymous_namespace{simd_math.cpp}
ref_log() :
gmx::test::anonymous_namespace{simd_math.cpp}
ref_pmecorrF() :
gmx::test::anonymous_namespace{simd_math.cpp}
ref_pmecorrV() :
gmx::test::anonymous_namespace{simd_math.cpp}
ref_sin() :
gmx::test::anonymous_namespace{simd_math.cpp}
ref_tan() :
gmx::test::anonymous_namespace{simd_math.cpp}
regexMatch() :
gmx
registerModule() :
gmx::anonymous_namespace{modules.cpp}
,
anonymous_namespace{legacymodules.cpp}
registerModuleNoNice() :
anonymous_namespace{legacymodules.cpp}
registerObsoleteTool() :
anonymous_namespace{legacymodules.cpp}
registerTestOptions() :
gmx::test
registerTrajectoryAnalysisModules() :
gmx
relativeToleranceToUlp() :
gmx::test::anonymous_namespace{testasserts.cpp}
removeExtraNewlinesRst() :
gmx::anonymous_namespace{helpwritercontext.cpp}
repall() :
gmx::anonymous_namespace{helpwritercontext.cpp}
replaceAll() :
gmx
replaceAllWords() :
gmx
replaceInternal() :
gmx::anonymous_namespace{stringutil.cpp}
runCommandLineModule() :
gmx
runParser() :
gmx::anonymous_namespace{selectioncollection.cpp}
runParserLoop() :
gmx::anonymous_namespace{selectioncollection.cpp}
- s -
setFatalErrorHandler() :
gmx
setLibraryFileFinder() :
gmx
setProgramContext() :
gmx
setSerialExpectationForParallelDataStarted() :
gmx::test::anonymous_namespace{mock_datamodule.cpp}
setSimd4RealFrom1R() :
gmx::test
setSimd4RealFrom3R() :
gmx::test
setSimdIntFrom1I() :
gmx::test
setSimdIntFrom3I() :
gmx::test
setSimdRealFrom1R() :
gmx::test
setSimdRealFrom3R() :
gmx::test
sfree_wrapper() :
gmx
simd4LoadStoreTester() :
anonymous_namespace{bootstrap_loadstore.cpp}
simd4Real2Vector() :
gmx::test
simdInt2Vector() :
gmx::test
simdLoadStoreTester() :
anonymous_namespace{bootstrap_loadstore.cpp}
simdReal2Vector() :
gmx::test
splitString() :
gmx
standardErrorHandler() :
gmx::anonymous_namespace{errorcodes.cpp}
startsListItem() :
gmx::anonymous_namespace{rstparser.cpp}
startsTable() :
gmx::anonymous_namespace{rstparser.cpp}
startsWith() :
gmx
stripString() :
gmx
stripSuffixIfPresent() :
gmx
swap() :
gmx
- t -
testFunction() :
anonymous_namespace{vectypes.cpp}
toUpperCase() :
gmx::anonymous_namespace{helpwritercontext.cpp}
translateException() :
gmx
tst_invsqrt_pair0() :
gmx::test::anonymous_namespace{simd_math.cpp}
tst_invsqrt_pair1() :
gmx::test::anonymous_namespace{simd_math.cpp}
tst_invsqrt_singleaccuracy_pair0() :
gmx::test::anonymous_namespace{simd_math.cpp}
tst_invsqrt_singleaccuracy_pair1() :
gmx::test::anonymous_namespace{simd_math.cpp}
- v -
value2string() :
gmx::test::anonymous_namespace{cmdlinetest.cpp}
vector2Simd4Real() :
gmx::test
vector2SimdInt() :
gmx::test
vector2SimdReal() :
gmx::test
- w -
warning_rlimit() :
anonymous_namespace{pairs.cpp}
withinAction() :
gmx::anonymous_namespace{nbsearch.cpp}
wrapperSimd4LoadR() :
anonymous_namespace{bootstrap_loadstore.cpp}
WrapperSimd4LoadUR() :
anonymous_namespace{bootstrap_loadstore.cpp}
wrapperSimd4StoreR() :
anonymous_namespace{bootstrap_loadstore.cpp}
WrapperSimd4StoreUR() :
anonymous_namespace{bootstrap_loadstore.cpp}
wrapperSimdLoadI() :
anonymous_namespace{bootstrap_loadstore.cpp}
wrapperSimdLoadR() :
anonymous_namespace{bootstrap_loadstore.cpp}
wrapperSimdLoadUI() :
anonymous_namespace{bootstrap_loadstore.cpp}
WrapperSimdLoadUR() :
anonymous_namespace{bootstrap_loadstore.cpp}
wrapperSimdStoreI() :
anonymous_namespace{bootstrap_loadstore.cpp}
wrapperSimdStoreR() :
anonymous_namespace{bootstrap_loadstore.cpp}
wrapperSimdStoreUI() :
anonymous_namespace{bootstrap_loadstore.cpp}
WrapperSimdStoreUR() :
anonymous_namespace{bootstrap_loadstore.cpp}
writeCommandLineHelpCMain() :
gmx
- z -
zero_thread_forces() :
anonymous_namespace{listed-forces.cpp}
Generated on Thu Dec 21 2017 11:47:12 for Gromacs by
1.8.5