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domdec Directory Reference
+ Directory dependency graph for domdec:

Directories

directory  tests
 

Files

file  atomdistribution.cpp
 
file  atomdistribution.h
 
file  box.cpp
 
file  box.h
 
file  builder.h
 This file declares a builder class for the manager of domain decomposition.
 
file  cellsizes.cpp
 
file  cellsizes.h
 
file  collect.cpp
 
file  collect.h
 Declares functions to collect state data to the master rank.
 
file  distribute.cpp
 
file  distribute.h
 
file  dlb.cpp
 
file  dlb.h
 This file declares functions to interact with the dynamic load balancing machinery.
 
file  dlbtiming.cpp
 
file  dlbtiming.h
 This file declares functions for timing the load imbalance due to domain decomposition.
 
file  domdec.cpp
 
file  domdec.h
 This file declares functions for mdrun to call to manage the details of its domain decomposition.
 
file  domdec_constraints.cpp
 
file  domdec_constraints.h
 
file  domdec_internal.h
 
file  domdec_network.cpp
 
file  domdec_network.h
 This file declares functions for (mostly) the domdec module to use MPI functionality.
 
file  domdec_setup.cpp
 
file  domdec_setup.h
 
file  domdec_specatomcomm.cpp
 
file  domdec_specatomcomm.h
 
file  domdec_struct.h
 Declares structures related to domain decomposition.
 
file  domdec_topology.cpp
 
file  domdec_vsite.cpp
 
file  domdec_vsite.h
 
file  dump.cpp
 
file  dump.h
 
file  ga2la.cpp
 
file  ga2la.h
 Defines structures and functions for mapping from global to local atom indices. The functions are performance critical and should be inlined.
 
file  gpuhaloexchange.h
 Declaration of GPU halo exchange.
 
file  gpuhaloexchange_impl.cpp
 
file  hashedmap.h
 Defines structures and functions for mapping from keys to entries indices using a hash table. The functions are performance critical and should be inlined.
 
file  localatomset.cpp
 
file  localatomset.h
 Declares gmx::LocalAtomSet.
 
file  localatomsetdata.cpp
 
file  localatomsetdata.h
 
file  localatomsetmanager.cpp
 
file  localatomsetmanager.h
 Declares gmx::LocalAtomSetManager.
 
file  mdsetup.cpp
 
file  mdsetup.h
 Contains functions relevant to simulation setup in MD drivers.
 
file  options.h
 This file declares command-line options for mdrun related to domain decomposition.
 
file  partition.cpp
 
file  partition.h
 This file declares functions for mdrun to call to make a new domain decomposition, and check it.
 
file  redistribute.cpp
 
file  redistribute.h
 
file  utility.cpp
 
file  utility.h