Gromacs  2020.3
 All Classes Namespaces Files Functions Variables Typedefs Enumerations Enumerator Friends Macros Groups Pages
utility Directory Reference
+ Directory dependency graph for utility:


Low-Level Utilities (utility)


directory  tests
 Unit tests for Low-Level Utilities (utility).


file  alignedallocator.cpp
file  alignedallocator.h
 Declares allocation policy classes and allocators that are used to make library containers compatible with alignment requirements of particular hardware, e.g. memory operations for SIMD or accelerators.
file  allocator.h
 Declares gmx::Allocator template whose allocation functionality is configured both by type of object allocated and a policy class that configures the necessary matching malloc and free operation.
file  any.cpp
file  any.h
 Declares gmx::Any.
file  arrayref.h
 Declares gmx::ArrayRef.
file  arraysize.h
 Provides asize() function for calculating the static size of an array at compile time.
file  basedefinitions.h
 Basic types and macros used throughout GROMACS.
file  basenetwork.cpp
file  basenetwork.h
 Utility functions for basic MPI and network functionality.
file  baseversion.cpp
file  baseversion.h
 Declares functions to get basic version information.
file  baseversion_gen.h
file  binaryinformation.cpp
file  binaryinformation.h
 Helper functionality for information about the currently running binary.
file  bitmask.h
 Declares gmx_bitmask_t and associated functions.
file  classhelpers.h
 Declares common utility classes and macros.
file  compare.cpp
file  compare.h
 Utilities for comparing data structures (for gmx check).
file  coolstuff.cpp
file  coolstuff.h
 Functionality for printing cool strings.
file  cstringutil.cpp
file  cstringutil.h
 Generic C string handling functions.
file  cuda_version_information.h
file  current_function.h
 Declares GMX_CURRENT_FUNCTION for getting the current function name.
file  datafilefinder.cpp
file  datafilefinder.h
 Declares gmx::DataFileFinder and related classes.
file  defaultinitializationallocator.h
 Declares an allocator that can use default initialization instead of values initialization. This is useful for improving performance of resize() in standard vectors for buffers in performance critical code.
file  dir_separator.h
 Provides OS-specific directory-name separator.
file  directoryenumerator.cpp
file  directoryenumerator.h
 Declares gmx::DirectoryEnumerator.
file  enumerationhelpers.h
 Defines helper types for class enumerations.
file  errorcodes.cpp
file  errorcodes.h
 Declares error codes and related functions for fatal error handling.
file  errorformat.cpp
file  errorformat.h
file  exceptions.cpp
file  exceptions.h
 Declares common exception classes and macros for fatal error handling.
file  fatalerror.cpp
file  fatalerror.h
 Declares fatal error handling and debugging routines for C code.
file  fileptr.h
 Declares guard pointer for RAII-style handling of cstdio FILE pointers.
file  fileredirector.cpp
file  fileredirector.h
 Declares gmx::IFileOutputRedirector.
file  filestream.cpp
file  filestream.h
 Declares implementations for textstream.h interfaces for file input/output.
file  fixedcapacityvector.h
 Declares gmx::FixedCapacityVector.
file  flags.h
 Declares gmx::FlagsTemplate.
file  futil.cpp
file  futil.h
 Low-level wrappers for OS-specific file handling with some GROMACS customizations.
file  gmxassert.cpp
file  gmxassert.h
 Defines assert macros customized for Gromacs.
file  gmxmpi.h
 Wraps mpi.h usage in Gromacs.
file  gmxomp.cpp
file  gmxomp.h
 Declares OpenMP wrappers to avoid conditional compilation.
file  ikeyvaluetreeerror.cpp
file  ikeyvaluetreeerror.h
 Declares an error handling interface for key-value tree operations.
file  init.cpp
file  init.h
 Declares functions for initializing the GROMACS library.
file  inmemoryserializer.cpp
file  inmemoryserializer.h
 Declares gmx::ISerializer implementation for in-memory serialization.
file  int64_to_int.cpp
file  int64_to_int.h
 Low-level utility for converting 64 bit int to int (the size of which is hardware dependent), printing a warning if an overflow will occur.
file  iserializer.h
 Declares a generic serialization interface that supports both directions.
file  keyvaluetree.cpp
file  keyvaluetree.h
 Declares a data structure for JSON-like structured key-value mapping.
file  keyvaluetreebuilder.h
 Declares classes for building the data structures in keyvaluetree.h.
file  keyvaluetreemdpwriter.cpp
file  keyvaluetreemdpwriter.h
 Declares a function to write a flat key-value tree to look like old-style mdp output.
file  keyvaluetreeserializer.cpp
file  keyvaluetreeserializer.h
 Declares serialization routines for KeyValueTree objects.
file  keyvaluetreetransform.cpp
file  keyvaluetreetransform.h
 Declares utilities for transforming key-value trees.
file  logger.cpp
file  logger.h
 Declares functionality for logging.
file  loggerbuilder.cpp
file  loggerbuilder.h
 Declares functionality for initializing logging.
file  mdmodulenotification.h
 Declares gmx::MdModuleNotification.
file  messagestringcollector.cpp
file  messagestringcollector.h
 Declares gmx::MessageStringCollector.
file  mpiinplacebuffers.cpp
file  mpiinplacebuffers.h
 Declares object that provides buffers for the copies necessary when MPI_IN_PLACE is not supported by the MPI library.
file  mutex.h
 Declares C++11-style basic threading primitives (gmx::Mutex, gmx::lock_guard).
file  niceheader.cpp
file  niceheader.h
 Declares function for printing a nice header for text output files.
file  nodelete.h
 Declares no_delete deleter for std::shared_ptr.
file  path.cpp
file  path.h
 Declares functions for OS-independent path handling.
file  physicalnodecommunicator.cpp
file  physicalnodecommunicator.h
 Declares functionality for communicators across physical nodes.
file  pleasecite.cpp
file  pleasecite.h
 Declares please_cite() for printing out literature references. Declares writeSourceDoi for printing of source code DOI.
file  programcontext.cpp
file  programcontext.h
 Declares gmx::IProgramContext and related methods.
file  range.h
 Declares gmx::Range.
file  real.h
 Declares real and related constants.
file  smalloc.cpp
file  smalloc.h
 C-style memory allocation routines for GROMACS.
file  snprintf.h
 Provide snprintf symbol on all OS (for internal Gromacs use)
file  strconvert.cpp
file  strconvert.h
 Declares common utility functions for conversions to and from strings.
file  strdb.cpp
file  strdb.h
 Declares C functions for reading files with a list of strings.
file  stringcompare.h
 Declares utility functionst for string comparison.
file  stringstream.cpp
file  stringstream.h
 Declares implementations for textstream.h interfaces for input/output to in-memory strings.
file  stringutil.cpp
file  stringutil.h
 Declares common string utility and formatting routines.
file  sysinfo.cpp
file  sysinfo.h
 Declares functions that wrap platform-specific calls for obtaining information about the operating environment and the current process.
file  textreader.cpp
file  textreader.h
 Declares gmx::TextReader.
file  textstream.h
 Declares interfaces for simple input/output streams.
file  textwriter.cpp
file  textwriter.h
 Declares gmx::TextWriter.
file  txtdump.cpp
file  txtdump.h
 Declares helper functions for dumping basic data structures as text.
file  typetraits.h
 Declares type traits.
file  unique_cptr.h
 Declares gmx::unique_cptr and gmx::sfree_guard.