********** User guide ********** .. highlight:: bash This guide provides * material introducing |Gromacs| * practical advice for making effective use of |Gromacs|. For getting, building and installing |Gromacs|, see the :doc:`/install-guide/index`. For background on algorithms and implementations, see the `reference manual`_. .. _reference manual: gmx-manual-parent-dir_ .. toctree:: :maxdepth: 2 getting-started floating-point system-preparation cutoff-schemes mdrun-features mdrun-performance managing-simulations mdp-options run-time-errors file-formats cmdline environment-variables terminology