|
Gromacs
5.1
|
All Classes Namespaces Files Functions Variables Typedefs Enumerations Enumerator Friends Macros Groups Pages
|
Gromacs
5.1
|
Inheritance diagram for gmx::anonymous_namespace{histogram.cpp}::StaticAverageHistogram: Collaboration diagram for gmx::anonymous_namespace{histogram.cpp}::StaticAverageHistogram:Represents copies of average histograms.
Methods in AbstractAverageHistogram that return new histogram instances return objects of this class. Initialization of values is handled in those methods.
Public Member Functions | |
| StaticAverageHistogram (const AnalysisHistogramSettings &settings) | |
| Creates an average histogram module with defined bin parameters. | |
| Public Member Functions inherited from gmx::AbstractAverageHistogram | |
| const AnalysisHistogramSettings & | settings () const |
| Returns bin properties for the histogram. | |
| AverageHistogramPointer | resampleDoubleBinWidth (bool bIntegerBins) const |
| Creates a copy of the histogram with double the bin width. More... | |
| AverageHistogramPointer | clone () const |
| Creates a deep copy of the histogram. More... | |
| void | normalizeProbability () |
| Normalizes the histogram such that the integral over it is one. | |
| void | makeCumulative () |
| Makes the histograms cumulative by summing up each bin to all bins after it. More... | |
| void | scaleSingle (int index, real factor) |
| Scales a single histogram by a uniform scaling factor. | |
| void | scaleAll (real factor) |
| Scales all histograms by a uniform scaling factor. | |
| void | scaleAllByVector (real factor[]) |
| Scales the value of each bin by a different scaling factor. | |
| void | done () |
| Notifies attached modules of the histogram data. More... | |
| Public Member Functions inherited from gmx::AbstractAnalysisArrayData | |
| virtual int | frameCount () const |
| Returns the total number of frames in the data. More... | |
| int | rowCount () const |
| Returns the number of rows in the data array. More... | |
| bool | isAllocated () const |
| Returns true if values have been allocated. | |
| real | xstart () const |
| Returns the x value of the first frame. | |
| real | xstep () const |
| Returns the step between frame x values. | |
| real | xvalue (int row) const |
| Returns the x value of a row. | |
| const AnalysisDataValue & | value (int row, int col) const |
| Returns a given array element. | |
| Public Member Functions inherited from gmx::AbstractAnalysisData | |
| bool | isMultipoint () const |
| Whether the data can have multiple points in the same column in the same frame. More... | |
| int | dataSetCount () const |
| Returns the number of data sets in the data object. More... | |
| int | columnCount (int dataSet) const |
| Returns the number of columns in a data set. More... | |
| int | columnCount () const |
| Returns the number of columns in the data. More... | |
| AnalysisDataFrameRef | tryGetDataFrame (int index) const |
| Access stored data. More... | |
| AnalysisDataFrameRef | getDataFrame (int index) const |
| Access stored data. More... | |
| bool | requestStorage (int nframes) |
| Request storage of frames. More... | |
| void | addModule (AnalysisDataModulePointer module) |
| Adds a module to process the data. More... | |
| void | addColumnModule (int col, int span, AnalysisDataModulePointer module) |
| Adds a module that processes only a subset of the columns. More... | |
| void | applyModule (AnalysisDataModuleInterface *module) |
| Applies a module to process data that is ready. More... | |
Additional Inherited Members | |
| Protected Member Functions inherited from gmx::AbstractAverageHistogram | |
| AbstractAverageHistogram () | |
| Creates a histogram module with undefined bins. More... | |
| AbstractAverageHistogram (const AnalysisHistogramSettings &settings) | |
| Creates a histogram module with defined bin parameters. | |
| void | init (const AnalysisHistogramSettings &settings) |
| (Re)initializes the histogram from settings. | |
| Protected Member Functions inherited from gmx::AbstractAnalysisArrayData | |
| AbstractAnalysisArrayData () | |
| Initializes an empty array data object. More... | |
| void | setColumnCount (int ncols) |
| Sets the number of columns in the data array. More... | |
| void | setRowCount (int rowCount) |
| Sets the number of rows in the data array. More... | |
| void | allocateValues () |
| Allocates memory for the values. More... | |
| void | setXAxis (real start, real step) |
| Sets the values reported as x values for frames. More... | |
| void | setXAxisValue (int row, real value) |
| Sets a single value reported as x value for frames. More... | |
| AnalysisDataValue & | value (int row, int col) |
| Returns a reference to a given array element. | |
| void | valuesReady () |
| Notifies modules of the data. More... | |
| Protected Member Functions inherited from gmx::AbstractAnalysisData | |
| AbstractAnalysisData () | |
| Initializes a new analysis data object. More... | |
| void | setDataSetCount (int dataSetCount) |
| Sets the number of data sets. More... | |
| void | setColumnCount (int dataSet, int columnCount) |
| Sets the number of columns for a data set. More... | |
| void | setMultipoint (bool bMultipoint) |
| Sets whether the data has multiple points per column in a frame. More... | |
| AnalysisDataModuleManager & | moduleManager () |
| Returns the module manager to use for calling notification methods. | |
| const AnalysisDataModuleManager & | moduleManager () const |
| Returns the module manager to use for calling notification methods. | |
| Static Protected Member Functions inherited from gmx::AbstractAnalysisArrayData | |
| static void | copyContents (const AbstractAnalysisArrayData *src, AbstractAnalysisArrayData *dest) |
| Copies the contents into a new object. More... | |
1.8.5