Gromacs  2016.4
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  A  
DataFileInfo (gmx)   IExceptionInfo (gmx::internal)   ocl_gpu_id_t   StaticDataPointsStorageChecker (gmx::test::anonymous_namespace{mock_datamodule.cpp})   
DataFileOptions (gmx)   IExecutableEnvironment (gmx)   omp_module_nthreads_t   StaticLog2 (gmx)   
AbstractAnalysisArrayData (gmx)   DataStorageRequester (gmx::test::anonymous_namespace{mock_datamodule.cpp})   IFileInputRedirector (gmx)   OptionInfo (gmx)   StaticLog2< 0 > (gmx)   
AbstractAnalysisData (gmx)   DefaultExecutableEnvironment (gmx::anonymous_namespace{cmdlineprogramcontext.cpp})   IFileOutputRedirector (gmx)   OptionManagerContainer (gmx)   StaticLog2< 1 > (gmx)   
AbstractAverageHistogram (gmx)   DefaultInputRedirector (gmx::anonymous_namespace{fileredirector.cpp})   IHelpExport (gmx::anonymous_namespace{cmdlinehelpmodule.cpp})   Options (gmx)   StringFormatter (gmx)   
AbstractCompositeHelpTopic (gmx)   DefaultOutputRedirector (gmx::anonymous_namespace{fileredirector.cpp})   IHelpTopic (gmx)   OptionsAdapter (gmx::anonymous_namespace{pargs.cpp})   StringInputStream (gmx)   
AbstractOption (gmx)   DefaultProgramContext (gmx::anonymous_namespace{programcontext.cpp})   ilist_data_t   OptionsAssigner (gmx)   StringKeywordMatchItem (anonymous_namespace{sm_keywords.cpp})   
AbstractOptionStorage (gmx)   HardwareTopology::Device (gmx)   IMDEnergyBlock   OptionsBehaviorCollection (gmx)   StringOption (gmx)   
AbstractPlotModule (gmx)   DirectoryEnumerator (gmx)   IMDHeader   OptionsFilter (gmx::anonymous_namespace{cmdlinehelpwriter.cpp})   StringOptionInfo (gmx)   
AbstractSimpleHelpTopic (gmx)   DomainDecompositionSpecialCasesTest (anonymous_namespace{domain_decomposition.cpp})   IMDSocket   OptionsImpl (gmx::internal)   StringOptionStorage (gmx)   
AbstractTrajectoryAnalysisModuleTestFixture (gmx::test)   DoubleOption (gmx)   IMessageWriter (gmx::anonymous_namespace{exceptions.cpp})   OptionsIterator (gmx)   StringOutputStream (gmx)   
AlignedAllocator (gmx)   DoubleOptionInfo (gmx)   TrajectoryAnalysisSettings::Impl (gmx)   OptionsListFormatter (gmx::anonymous_namespace{cmdlinehelpwriter.cpp})   StringTestBase (gmx::test)   
AnalysisArrayData (gmx)   DoubleOptionStorage (gmx)   TrajectoryAnalysisModuleData::Impl (gmx)   OptionsModifyingIterator (gmx)   SurfaceAreaCalculator (gmx)   
AnalysisData (gmx)   
  E  
TrajectoryAnalysisModule::Impl (gmx)   OptionsModifyingTypeVisitor (gmx)   swap_compartment   
AnalysisDataAverageModule (gmx)   TextTableFormatter::Impl (gmx)   OptionsModifyingVisitor (gmx)   swap_group   
AnalysisDataBinAverageModule (gmx)   eligible_gpu_ids   TestReferenceChecker::Impl (gmx::test)   OptionStorageTemplate (gmx)   SynopsisFormatter (gmx::anonymous_namespace{cmdlinehelpwriter.cpp})   
AnalysisDataDisplacementModule (gmx)   em_state_t   TestFileManager::Impl (gmx::test)   OptionsTypeVisitor (gmx)   
  T  
AnalysisDataFrameAverageModule (gmx)   EmptyArrayRef (gmx)   MockAnalysisDataModule::Impl (gmx::test)   OptionsVisitor (gmx)   
AnalysisDataFrameAverager (gmx)   EnergyFrame (gmx::test)   SelectionParserSymbolTable::Impl (gmx)   OptionTemplate (gmx)   t_compare_value   
AnalysisDataFrameHeader (gmx)   EnergyFrameReader (gmx::test)   SelectionParserSymbolIterator::Impl (gmx)   
  P  
t_compiler_data   
AnalysisDataFrameLocalData (gmx)   EnumIndexStore (gmx::internal)   SelectionParserSymbol::Impl (gmx)   t_conect (gmx::analysismodules::anonymous_namespace{sasa.cpp})   
AnalysisDataFrameLocalDataHandle (gmx)   EnumIndexStoreInterface (gmx::internal)   SelectionOptionManager::Impl (gmx)   PairDistance (gmx::analysismodules::anonymous_namespace{pairdist.cpp})   t_coordselection   
AnalysisDataFrameLocalDataSetHandle (gmx)   EnumOption (gmx)   SelectionCollection::Impl (gmx)   PairDistanceModuleData (gmx::analysismodules::anonymous_namespace{pairdist.cpp})   t_cosines   
AnalysisDataFrameRef (gmx)   EnumOptionInfo (gmx)   PositionCalculationCollection::Impl (gmx)   UniformRealDistribution::param_type (gmx)   t_filenm   
AnalysisDataHandle (gmx)   EnumOptionStorage (gmx)   OptionsAssigner::Impl (gmx)   UniformIntDistribution::param_type (gmx)   t_gmx_IMD   
AnalysisDataHandleImpl (gmx::internal)   ErrorMessage (gmx::anonymous_namespace{exceptions.cpp})   HelpWriterContext::Impl (gmx)   TabulatedNormalDistribution::param_type (gmx)   t_mdatoms   
AnalysisDataLifetimeModule (gmx)   ExactTextMatch (gmx::test)   HelpManager::Impl (gmx)   NormalDistribution::param_type (gmx)   t_methoddata_compare   
AnalysisDataModuleManager (gmx)   ExceptionInfo (gmx)   HelpLinks::Impl (gmx)   GammaDistribution::param_type (gmx)   t_methoddata_distance   
AnalysisDataModuleParallel (gmx)   ExceptionInitializer (gmx)   FileNameOptionManager::Impl (gmx)   ExponentialDistribution::param_type (gmx)   t_methoddata_insolidangle   
AnalysisDataModuleSerial (gmx)   ExponentialDistribution (gmx)   CommandLineParser::Impl (gmx)   ParameterizedMdrunTestFixture (gmx::test)   t_methoddata_kweval   
AnalysisDataParallelOptions (gmx)   
  F  
CommandLineModuleManager::Impl (gmx)   pme_setup_t   t_methoddata_kwint   
AnalysisDataPlotModule (gmx)   CommandLineHelpWriter::Impl (gmx)   PositionCalculationCollection (gmx)   t_methoddata_kwreal   
AnalysisDataPlotSettings (gmx)   f_thread_t   CommandLineHelpContext::Impl (gmx)   PrivateImplPointer (gmx)   t_methoddata_kwstr (anonymous_namespace{sm_keywords.cpp})   
AnalysisDataPointSetRef (gmx)   FileIOError (gmx)   AnalysisDataWeightedHistogramModule::Impl (gmx)   
  R  
t_methoddata_merge   
AnalysisDataProxy (gmx)   FileNameOption (gmx)   AnalysisDataSimpleHistogramModule::Impl (gmx)   t_methoddata_permute   
AnalysisDataSimpleHistogramModule (gmx)   FileNameOptionInfo (gmx)   AnalysisDataModuleManager::Impl (gmx)   Rdf (gmx::analysismodules::anonymous_namespace{rdf.cpp})   t_methoddata_pos   
AnalysisDataStorage (gmx)   FileNameOptionManager (gmx)   AnalysisDataLifetimeModule::Impl (gmx)   RdfModuleData (gmx::analysismodules::anonymous_namespace{rdf.cpp})   t_methoddata_same   
AnalysisDataStorageFrame (gmx)   FileNameOptionStorage (gmx)   AnalysisDataDisplacementModule::Impl (gmx)   AlignedAllocator::rebind (gmx)   t_pargs   
AnalysisDataStorageFrameData (gmx::internal)   FileTypeHandler (gmx::anonymous_namespace{filenameoption.cpp})   AnalysisData::Impl (gmx)   Regex (gmx)   t_partition   
AnalysisDataStorageImpl (gmx::internal)   FileTypeMapping (gmx::anonymous_namespace{filenameoption.cpp})   AbstractCompositeHelpTopic::Impl (gmx)   SelectionOptionManager::Impl::RequestsClearer (gmx)   t_partition_item   
AnalysisDataTestFixture (gmx::test)   FlagsTemplate (gmx)   AbstractAnalysisData::Impl (gmx)   RootHelpTopic (gmx::anonymous_namespace{cmdlinehelpmodule.cpp})   t_pbc   
AnalysisDataTestInput (gmx::test)   FloatingPointDifference (gmx::test)   InconsistentInputError (gmx)   RstParagraphIterator (gmx)   t_pullcoord   
AnalysisDataTestInputFrame (gmx::test)   FloatingPointTolerance (gmx::test)   IndexFileWriterModule (gmx::analysismodules::anonymous_namespace{select.cpp})   
  S  
t_register_method   
AnalysisDataTestInputPointSet (gmx::test)   FloatOption (gmx)   InstallationPrefixInfo (gmx)   t_spheresurfacebin   
AnalysisDataValue (gmx)   FloatOptionInfo (gmx)   Int64Option (gmx)   Sasa (gmx::analysismodules::anonymous_namespace{sasa.cpp})   t_swap   
AnalysisDataVectorPlotModule (gmx)   FloatOptionStorage (gmx)   Int64OptionInfo (gmx)   SasaModuleData (gmx::analysismodules::anonymous_namespace{sasa.cpp})   t_UmbrellaHeader   
AnalysisDataWeightedHistogramModule (gmx)   FreeVolume (gmx::analysismodules::anonymous_namespace{freevolume.cpp})   Int64OptionStorage (gmx)   scoped_cptr (gmx)   t_UmbrellaOptions   
AnalysisHistogramSettings (gmx)   
  G  
IntegerOption (gmx)   Selection (gmx)   t_UmbrellaWindow   
AnalysisHistogramSettingsInitializer (gmx)   IntegerOptionInfo (gmx)   SelectionCollection (gmx)   TabulatedNormalDistribution (gmx)   
AnalysisNeighborhood (gmx)   GammaDistribution (gmx)   IntegerOptionStorage (gmx)   SelectionCompiler (gmx)   TerminationHelper (gmx::test)   
AnalysisNeighborhoodPair (gmx)   GlobalCommandLineHelpContext (gmx)   IntegrationTestFixture (gmx::test)   SelectionData (gmx::internal)   TestException (gmx::test)   
AnalysisNeighborhoodPairSearch (gmx)   gmx_ana_index_t   InteractiveTestHelper (gmx::test)   SelectionEvaluator (gmx)   TestFileInputRedirector (gmx::test)   
AnalysisNeighborhoodPositions (gmx)   gmx_ana_indexgrps_t   InterdependentTask   SelectionFileOption (gmx)   TestFileManager (gmx::test)   
AnalysisNeighborhoodSearch (gmx)   gmx_ana_indexmap_t   InternalError (gmx)   SelectionFileOptionInfo (gmx)   TestFileOutputRedirector (gmx::test)   
AnalysisTemplate   gmx_ana_pos_t   InvalidInputError (gmx)   SelectionFileOptionStorage (gmx)   TestOptionsProvider (gmx::test)   
AnglePositionIterator (gmx::analysismodules::anonymous_namespace{angle.cpp})   gmx_ana_poscalc_t   IOptionManager (gmx)   SelectionLocation (gmx)   TestOptionsRegistry (gmx::test::anonymous_namespace{testoptions.cpp})   
APIError (gmx)   gmx_ana_selcollection_t   IOptionsBehavior (gmx)   SelectionOption (gmx)   TestProgramContext (gmx::test::anonymous_namespace{testinit.cpp})   
ArrayRef (gmx)   gmx_ana_selmethod_help_t   IOptionsContainer (gmx)   SelectionOptionBehavior (gmx)   TestReferenceChecker (gmx::test)   
AtomIndex   gmx_ana_selmethod_t   IOptionsFormatter (gmx::anonymous_namespace{cmdlinehelpwriter.cpp})   SelectionOptionInfo (gmx)   TestReferenceData (gmx::test)   
  B  
gmx_ana_selparam_t   IProgramContext (gmx)   SelectionOptionManager (gmx)   TestReferenceDataImpl (gmx::test::internal)   
gmx_ana_selvalue_t   ITextBlockMatcher (gmx::test)   SelectionOptionStorage (gmx)   TextInputFile (gmx)   
BasicAverageHistogramModule (gmx::internal)   gmx_device_info_t   ITextBlockMatcherSettings (gmx::test)   SelectionParserParameter (gmx)   TextInputStream (gmx)   
BasicHistogramImpl (gmx::internal)   gmx_device_runtime_data_t   ITopologyProvider (gmx)   SelectionParserSymbol (gmx)   TextLineWrapper (gmx)   
BasicVector (gmx)   gmx_domdec_constraints_t   IWrapper (gmx::anonymous_namespace{helpwritercontext.cpp})   SelectionParserSymbolIterator (gmx)   TextLineWrapperSettings (gmx)   
BinaryInformationSettings (gmx)   gmx_domdec_specat_comm_t   
  K  
SelectionParserSymbolTable (gmx)   TextOutputFile (gmx)   
bonded_threading_t   gmx_fft_fftpack   SelectionParserValue (gmx)   TextOutputStream (gmx)   
BondedInteractionsTest (gmx::test)   gmx_fft_fftw3   KeywordDetailsHelpTopic (gmx::anonymous_namespace{selhelp.cpp})   SelectionPosition (gmx)   TextReader (gmx)   
BooleanOption (gmx)   gmx_fft_mkl   KeywordsHelpTopic (gmx::anonymous_namespace{selhelp.cpp})   SelectionOptionManager::Impl::SelectionRequest (gmx)   TextTableFormatter (gmx)   
BooleanOptionInfo (gmx)   gmx_ga2la_t   
  L  
SelectionTreeElement (gmx)   TextWriter (gmx)   
BooleanOptionStorage (gmx)   gmx_hash_e_t   SelelemTemporaryValueAssigner (anonymous_namespace{evaluate.cpp})   thread_work_t   
  C  
gmx_hash_t   HardwareTopology::LogicalProcessor (gmx)   SettleTest (gmx::test)   ThreeFry2x64 (gmx)   
gmx_help_make_index_group   CpuInfo::LogicalProcessor (gmx)   ShakeTest (anonymous_namespace{shake.cpp})   ThreeFry2x64Fast (gmx)   
HardwareTopology::Cache (gmx)   gmx_laa_t   
  M  
HelpWriterContext::Impl::SharedState (gmx)   ThreeFry2x64General (gmx)   
cl_atomdata   gmx_lal_t   SignalTest (gmx::test)   ThrowLocation (gmx)   
cl_nb_staging   gmx_nbnxn_cuda_t   HardwareTopology::Machine (gmx)   Simd4DBool (gmx)   TimeOptionScaler (gmx::anonymous_namespace{timeunitmanager.cpp})   
cl_nbparam   gmx_nbnxn_kernel_timing_data_t   MdrunComparisonFixture (gmx::test)   Simd4Double (gmx)   TimeUnitBehavior (gmx)   
cl_nbparam_params   gmx_nbnxn_ocl_t   MdrunCompressedXOutputTest (anonymous_namespace{compressed_x_output.cpp})   Simd4FBool (gmx)   TimeUnitManager (gmx)   
cl_plist   gmx_pme_comm_n_box_t   MdrunRerun (anonymous_namespace{rerun.cpp})   Simd4Float (gmx)   TopologyInformation (gmx)   
cl_timers   gmx_pme_comm_vir_ene_t   MdrunTestFixture (gmx::test)   Simd4Test (gmx::test)   TrajectoryAnalysisCommandLineRunner (gmx)   
CMainCommandLineModule (gmx::anonymous_namespace{cmdlinemodulemanager.cpp})   gmx_pme_pp   MdrunTestFixtureBase (gmx::test)   SimdBaseTest (gmx::test)   TrajectoryAnalysisModule (gmx)   
TextTableFormatter::Impl::ColumnData (gmx)   gmx_reverse_top_t   MempoolGroupReserver (anonymous_namespace{evaluate.cpp})   SimdDBool (gmx)   TrajectoryAnalysisModuleData (gmx)   
CommandLine (gmx::test)   gmx_sel_evaluate_t   MempoolSelelemReserver (anonymous_namespace{evaluate.cpp})   SimdDIBool (gmx)   TrajectoryAnalysisModuleDataBasic (gmx::anonymous_namespace{analysismodule.cpp})   
CommandLineCommonOptionsHolder (gmx)   gmx_sel_lexer_t   MessageStringCollector (gmx)   SimdDInt32 (gmx)   TrajectoryAnalysisModuleTestFixture (gmx::test)   
CommandLineHelpContext (gmx)   gmx_sel_mempool_block_t   MessageStringContext (gmx)   SimdDouble (gmx)   TrajectoryAnalysisRunnerCommon (gmx)   
CommandLineHelpModule (gmx)   gmx_sel_mempool_t   MessageWriterFileNoThrow (gmx::anonymous_namespace{exceptions.cpp})   SimdFBool (gmx)   TrajectoryAnalysisSettings (gmx)   
CommandLineHelpWriter (gmx)   gmx_sparsematrix   MessageWriterString (gmx::anonymous_namespace{exceptions.cpp})   SimdFIBool (gmx)   TrajectoryFrame (gmx::test)   
CommandLineModuleGroup (gmx)   gmx_wallclock_gpu_t   MessageWriterTextWriter (gmx::anonymous_namespace{exceptions.cpp})   SimdFInt32 (gmx)   TrajectoryFrameReader (gmx::test)   
CommandLineModuleGroupData (gmx)   gmx_walltime_accounting   MindistAction (gmx::anonymous_namespace{nbsearch.cpp})   SimdFloat (gmx)   
  U  
CommandLineModuleManager (gmx)   GromacsException (gmx)   MockAverageHistogram (anonymous_namespace{histogram.cpp})   SimdFloatingpointUtilTest (gmx::test::anonymous_namespace{simd_floatingpoint_util.cpp})   
CommandLineModuleManagerTestBase (gmx::test)   GromppTest (anonymous_namespace{grompp.cpp})   MockModule (gmx::test)   SimdLoadDProxyInternal (gmx)   UniformIntDistribution (gmx)   
CommandLineModuleSettings (gmx)   OptionsImpl::Group (gmx::internal)   MockOption (anonymous_namespace{abstractoptionstorage.cpp})   SimdLoadFProxyInternal (gmx)   UniformRealDistribution (gmx)   
CommandLineParser (gmx)   
  H  
MockOptionsModule (gmx::test)   SimdLoadIProxyInternal (gmx)   UserInputError (gmx)   
CommandLineProgramContext (gmx)   MockOptionStorage (anonymous_namespace{abstractoptionstorage.cpp})   SimdLoadUDProxyInternal (gmx)   
  V  
CommandLineTestBase (gmx::test)   HardwareTopology (gmx)   ModuleHelpTopic (gmx::anonymous_namespace{cmdlinehelpmodule.cpp})   SimdLoadUFProxyInternal (gmx)   
CommandLineTestHelper (gmx::test)   HelpExportCompletion (gmx::anonymous_namespace{cmdlinehelpmodule.cpp})   AnalysisDataModuleManager::Impl::ModuleInfo (gmx)   SimdLoadUIProxyInternal (gmx)   VsiteThread   
CommandsHelpTopic (gmx::anonymous_namespace{cmdlinehelpmodule.cpp})   HelpExportReStructuredText (gmx::anonymous_namespace{cmdlinehelpmodule.cpp})   MultiSimTest (gmx::test)   SimdSetZeroProxyInternal (gmx)   
  W  
CompositeHelpTopic (gmx)   HelpLinks (gmx)   
  N  
SimdTest (gmx::test)   
ConfMatch (gmx::test)   HelpManager (gmx)   SimpleHelpTopic (gmx)   WrapperToString (gmx::anonymous_namespace{helpwritercontext.cpp})   
ConstArrayRef (gmx)   HelpWriterContext (gmx)   nb_staging   SimulationInstabilityError (gmx)   WrapperToVector (gmx::anonymous_namespace{helpwritercontext.cpp})   
HardwareTopology::Core (gmx)   HardwareTopology::HWThread (gmx)   no_delete (gmx)   SimulationRunner (gmx::test)   
  X  
CpuInfo (gmx)   
  I  
NormalDistribution (gmx)   SimulationSignal (gmx)   
cu_atomdata   NoTextMatch (gmx::test)   SimulationSignaller (gmx)   XvgMatch (gmx::test)   
cu_nbparam   IAnalysisDataModule (gmx)   NotImplementedError (gmx)   HardwareTopology::Socket (gmx)   
cu_plist   ICommandLineModule (gmx)   HardwareTopology::Numa (gmx)   StandardInputStream (gmx)   
cu_timers   ICommandLineOptionsModule (gmx)   HardwareTopology::NumaNode (gmx)   StaticAverageHistogram (gmx::anonymous_namespace{histogram.cpp})   
  D  
ICommandLineOptionsModuleSettings (gmx)   
  O  
StaticDataFrameHeaderChecker (gmx::test::anonymous_namespace{mock_datamodule.cpp})   
IdentityFormatter (gmx)   StaticDataPointsChecker (gmx::test::anonymous_namespace{mock_datamodule.cpp})   
DataFileFinder (gmx)   ObsoleteToolModule (anonymous_namespace{legacymodules.cpp})   
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