Gromacs  2016.4
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File List
Here is a list of all documented files with brief descriptions:
[detail level 12345]
o-docsBuild system and source code for various documentation items
|\-doxygenDoxygen build system and general documentation content
| o*directories.cppDoxygen documentation file for directories in the source tree
| \*misc.cppDoxygen documentation file for group declarations etc
o-shareDirectory that contains installed data files
|\-templateTemplate code for writing analysis programs
| \*template.cppTemplate code for writing analysis programs
\-srcMain source code directory
 o-gromacsSource code for building the libgromacs library
 |o+analysisdataParallelizable Handling of Output Data (analysisdata)
 |o+commandlineCommand Line Program Management (commandline)
 |o+correlationfunctions
 |o+domdec
 |o+essentialdynamics
 |o+ewald
 |o+fft
 |o+fileio
 |o+gmxana
 |o+gmxpreprocess
 |o+gpu_utils
 |o+hardware
 |o+imd
 |o+linearalgebra
 |o+listed-forces
 |o+math
 |o+mdlib
 |o+mdrunutility
 |o+mdtypes
 |o+onlinehelpHelp Formatting for Online Help (onlinehelp)
 |o+optionsExtensible Handling of Options (options)
 |o+pbcutil
 |o+pulling
 |o+random
 |o+selectionParsing and Evaluation of Analysis Selections (selection)
 |o+simdSIMD intrinsics interface (simd)
 |o+statistics
 |o+swap
 |o+timing
 |o+topology
 |o+trajectoryanalysisFramework for Trajectory Analysis (trajectoryanalysis)
 |o+utilityLow-Level Utilities (utility)
 |o*analysisdata.hPublic API convenience header for analysis data handling
 |o*commandline.hPublic API convenience header for managing command line programs
 |o*onlinehelp-doc.hDummy header for Help Formatting for Online Help (onlinehelp) documentation
 |o*options.hPublic API convenience header for handling of options
 |o*random.hPublic API convenience header for random engines and distributions
 |o*selection.hPublic API convenience header for selection handling
 |o*trajectoryanalysis.hPublic API convenience header for trajectory analysis framework
 |\*utility.hPublic API convenience header for low-level utilities
 o-programsSource code for building executables, see Wrapper binary implementation
 |o+mdrunSource code specific to mdrun
 |\+viewSource code specific to gmx view, including all X11-dependent code
 o-testutilsTesting Utilities (testutils)
 |o+testsUnit tests for Testing Utilities (testutils)
 |o*cmdlinetest.cppImplements classes from cmdlinetest.h
 |o*cmdlinetest.hDeclares utilities testing command-line programs
 |o*conftest.cppImplements routine to check the content of conf files
 |o*conftest.hDeclares function to add the content of a conf file to a checker
 |o*integrationtests.cppImplements classes in integrationtests.h
 |o*integrationtests.hDeclares test fixture for integration tests
 |o*interactivetest.cppImplements classes from interactivetest.h
 |o*interactivetest.hProvides helper classes for testing interactive prompts
 |o*mpi-printer.hDeclares gmx::test::initMPIOutput()
 |o*refdata-checkers.hDeclares internal helper classes for the reference data framework to check reference data values of different types
 |o*refdata-impl.hDeclares internal data structures for the reference data framework
 |o*refdata-xml.cppImplements reference data XML persistence
 |o*refdata-xml.hDeclares functions for reference data XML persistence
 |o*refdata.cppImplements classes and functions from refdata.h
 |o*refdata.hFunctionality for writing tests that can produce their own reference data
 |o*stringtest.cppImplements gmx::test::StringTestBase
 |o*stringtest.hDeclares gmx::test::StringTestBase
 |o*testasserts.cppImplements floating-point comparison routines from testasserts.h
 |o*testasserts.hExtra assertions for unit tests
 |o*testexceptions.hException classes for errors in tests
 |o*testfilemanager.cppImplements gmx::test::TestFileManager
 |o*testfilemanager.hDeclares gmx::test::TestFileManager
 |o*testfileredirector.cppImplements classes from testfileredirector.h
 |o*testfileredirector.hDeclares generic mock implementations for interfaces in fileredirector.h
 |o*testinit.cppImplements functions in testinit.h
 |o*testinit.hFunctions for initialing GROMACS unit test executables
 |o*testoptions.cppImplements functions in testoptions.h
 |o*testoptions.hFunctions for accessing test command-line options
 |o*testutils-doc.hDummy header for Testing Utilities (testutils) documentation
 |o*textblockmatchers.cppImplements classes from textblockmatchers.h
 |o*textblockmatchers.hDeclares utility classes for testing multi-line strings against reference data
 |o*unittest_main.cppMain() for unit tests that use Testing Utilities (testutils)
 |o*xvgtest.cppImplements routine to check the content of xvg files
 |\*xvgtest.hDeclares function to add the content of an xvg file to a checker
 \*gmxpre.hPrerequisite header file for GROMACS build