Here is a list of all documented class members with links to the class documentation for each member:
- r -
- r
: t_pargs
, gmx::SelectionParserValue
, t_compare_value
, t_methoddata_kwint
, gmx_ana_selvalue_t
, t_methoddata_kwreal
- r1
: gmx::SelectionParserValue
- r2
: gmx::SelectionParserValue
- range()
: gmx::AnalysisHistogramSettingsInitializer
- range_
: gmx::test::SimdBaseTest
- rangeEnd
: VsiteThread
- rangeStart
: VsiteThread
- rank_
: gmx::test::MultiSimTest
- RawArray
: gmx::BasicVector< ValueType >
- rbegin()
: gmx::ArrayRef< T >
, gmx::ConstArrayRef< T >
, gmx::ArrayRef< T >
- rcoulomb_sq
: cu_nbparam
, cl_nbparam
, cl_nbparam_params
- rcut_coulomb
: pme_setup_t
- RdfModuleData()
: gmx::analysismodules::anonymous_namespace{rdf.cpp}::RdfModuleData
- readAll()
: gmx::TextReader
- readFileToString()
: gmx::TextReader
- readLine()
: gmx::StandardInputStream
, gmx::TextInputFile
, gmx::StringInputStream
, gmx::TextReader
, gmx::TextInputStream
- readLineTrimmed()
: gmx::TextReader
- readNextFrame()
: gmx::TrajectoryAnalysisRunnerCommon
, gmx::test::EnergyFrameReader
, gmx::test::TrajectoryFrameReader
- readWriteFlags()
: gmx::FileNameOption
- real_fft
: gmx_fft_mkl
- real_transform
: gmx_fft_fftw3
- realMemory_
: gmx::test::anonymous_namespace{simd_floatingpoint_util.cpp}::SimdFloatingpointUtilTest
- redirector_
: gmx::FileNameOptionManager::Impl
- redirectStderrToDevNull()
: gmx::test::IntegrationTestFixture
- redirectStdoutToDevNull()
: gmx::test::IntegrationTestFixture
- redirectStringToStdin()
: gmx::test::IntegrationTestFixture
- reduceTask
: InterdependentTask
- refcount
: t_compiler_data
, gmx_ana_poscalc_t
- refCountArray_
: gmx::analysismodules::anonymous_namespace{pairdist.cpp}::PairDistanceModuleData
- reference
: gmx::AlignedAllocator< T >
, gmx::ArrayRef< T >
, gmx::ConstArrayRef< T >
- refId()
: gmx::SelectionPosition
- refid
: gmx_ana_indexmap_t
- refIds()
: gmx::Selection
- refIndex()
: gmx::AnalysisNeighborhoodPair
- refreshMassesAndCharges()
: gmx::internal::SelectionData
- refreshName()
: gmx::internal::SelectionData
- refreshValues()
: gmx::internal::EnumIndexStoreInterface
, gmx::internal::EnumIndexStore< EnumType >
, gmx::OptionStorageTemplate< T >
- Regex()
: gmx::Regex
- regexMatch
: gmx::Regex
- registerAnalysisDataset()
: gmx::TrajectoryAnalysisModule
- registerBasicDataset()
: gmx::TrajectoryAnalysisModule
- registerModule()
: gmx::CommandLineModuleManager
, gmx::TrajectoryAnalysisCommandLineRunner
- registerModuleDirect()
: gmx::ICommandLineOptionsModule
- registerModuleFactory()
: gmx::ICommandLineOptionsModule
- registerOption()
: gmx::SelectionOptionManager
- registerSubTopic()
: gmx::AbstractCompositeHelpTopic
- relativeLatency
: gmx::HardwareTopology::Numa
- relativeToleranceAsFloatingPoint()
: gmx::test::FloatingPointTolerance
- relativeToleranceAsPrecisionDependentUlp()
: gmx::test::FloatingPointTolerance
- relativeToleranceAsUlp()
: gmx::test::FloatingPointTolerance
- release()
: gmx::scoped_cptr< T, D >
- removeCalculation()
: gmx::PositionCalculationCollection::Impl
- removeFiles()
: gmx::test::TestFileManager::Impl
- removeTerminatingLineFeed()
: gmx::anonymous_namespace{exceptions.cpp}::MessageWriterString
- rend()
: gmx::ArrayRef< T >
, gmx::ConstArrayRef< T >
- replaceLinks()
: gmx::HelpWriterContext::Impl
- ReplaceList
: gmx::HelpWriterContext::Impl
- replacements_
: gmx::HelpWriterContext::Impl
- repulsion_shift
: cu_nbparam
, cl_nbparam
, cl_nbparam_params
- RequestList
: gmx::SelectionOptionManager::Impl
- requestOptionDelayedParsing()
: gmx::SelectionOptionManager
- requests_
: gmx::SelectionOptionManager::Impl
- RequestsClearer()
: gmx::SelectionOptionManager::Impl::RequestsClearer
- requestStorage()
: gmx::AbstractAnalysisData
, gmx::AnalysisDataStorage
- requestStorageInternal()
: gmx::AbstractAnalysisData
- requestUnsetRequiredOptions()
: gmx::SelectionOptionManager::Impl
- required()
: gmx::OptionTemplate< T, U >
- requiredAtoms_
: gmx::SelectionCollection::Impl
- requiresIndexGroups()
: gmx::SelectionCollection
, gmx::SelectionTreeElement
- requiresTopology()
: gmx::SelectionCollection
- res_a_
: gmx::analysismodules::anonymous_namespace{sasa.cpp}::SasaModuleData
- resampleDoubleBinWidth()
: gmx::AbstractAverageHistogram
- reserve()
: anonymous_namespace{evaluate.cpp}::MempoolSelelemReserver
, anonymous_namespace{evaluate.cpp}::MempoolGroupReserver
- ReservedSymbol
: gmx::SelectionParserSymbol
- reserveSpace()
: gmx::internal::EnumIndexStoreInterface
, gmx::internal::EnumIndexStore< EnumType >
- reset()
: gmx::NormalDistribution< RealType >
, gmx::ExponentialDistribution< RealType >
, gmx::GammaDistribution< RealType >
, gmx::TabulatedNormalDistribution< RealType, tableBits >
, gmx::UniformIntDistribution< IntType >
, gmx::UniformRealDistribution< RealType >
, gmx::AnalysisNeighborhoodSearch
, gmx::PrivateImplPointer< Impl >
, gmx::scoped_cptr< T, D >
- resolveExternalGroups()
: gmx::SelectionCollection::Impl
- resolveIndexGroupReference()
: gmx::SelectionTreeElement
- restart()
: gmx::ThreeFry2x64General< rounds, internalCounterBits >
- restoreOriginalPositions()
: gmx::internal::SelectionData
- result()
: gmx::anonymous_namespace{helpwritercontext.cpp}::WrapperToVector
, gmx::anonymous_namespace{helpwritercontext.cpp}::WrapperToString
, gmx::anonymous_namespace{exceptions.cpp}::MessageWriterString
- result_type
: gmx::GammaDistribution< RealType >
, gmx::TabulatedNormalDistribution< RealType, tableBits >
, gmx::ThreeFry2x64General< rounds, internalCounterBits >
, gmx::UniformIntDistribution< IntType >
, gmx::NormalDistribution< RealType >
, gmx::ExponentialDistribution< RealType >
, gmx::UniformRealDistribution< RealType >
- reverse_iterator
: gmx::ArrayRef< T >
, gmx::ConstArrayRef< T >
- reverseBoolean_
: gmx::OptionsAssigner::Impl
- right
: t_methoddata_compare
- rlist
: pme_setup_t
- rlist_sq
: cl_nbparam
, cl_nbparam_params
, cu_nbparam
- rng
: t_UmbrellaOptions
- root
: gmx_ana_selcollection_t
- rootChecker()
: gmx::test::CommandLineTestBase
, gmx::test::TestReferenceData
- rootChecker_
: gmx::test::MockAnalysisDataModule::Impl
- rootContext_
: gmx::HelpManager::Impl
- rootElement()
: gmx::internal::SelectionData
- rootGroup_
: gmx::internal::OptionsImpl
- rootHelp
: gmx_ana_selcollection_t
- RootHelpTopic()
: gmx::anonymous_namespace{cmdlinehelpmodule.cpp}::RootHelpTopic
- rotateBuffer()
: gmx::internal::AnalysisDataStorageImpl
- roundRange()
: gmx::AnalysisHistogramSettingsInitializer
- rowCount()
: gmx::AbstractAnalysisArrayData
- rperm
: t_methoddata_permute
- rpost_
: gmx::SelectionCollection::Impl
- RstParagraphIterator()
: gmx::RstParagraphIterator
- run()
: anonymous_namespace{legacymodules.cpp}::ObsoleteToolModule
, gmx::ICommandLineOptionsModule
, gmx::anonymous_namespace{cmdlinemodulemanager.cpp}::CMainCommandLineModule
, gmx::CommandLineModuleManager
, gmx::CommandLineHelpModule
, gmx::ICommandLineModule
- runAsMain()
: gmx::TrajectoryAnalysisCommandLineRunner
, gmx::ICommandLineOptionsModule
, gmx::TrajectoryAnalysisCommandLineRunner
- runAsMainCMain()
: gmx::CommandLineModuleManager
- runAsMainCMainWithSettings()
: gmx::CommandLineModuleManager
- runAsMainSingleModule()
: gmx::CommandLineModuleManager
- runExitsNormallyTest()
: gmx::test::MultiSimTest
- runFirstMdrun()
: gmx::test::TerminationHelper
- runMaxhTest()
: gmx::test::MultiSimTest
- runModuleDirect()
: gmx::test::CommandLineTestHelper
- runModuleFactory()
: gmx::test::CommandLineTestHelper
- runner_
: gmx::test::TerminationHelper
, gmx::test::MdrunTestFixture
- runSecondMdrun()
: gmx::test::TerminationHelper
- runTest()
: anonymous_namespace{shake.cpp}::ShakeTest
, anonymous_namespace{grompp.cpp}::GromppTest
, gmx::test::MdrunComparisonFixture
, gmx::test::AbstractTrajectoryAnalysisModuleTestFixture
, gmx::test::MdrunComparisonFixture
- rv
: t_pargs
- rvdw_sq
: cu_nbparam
, cl_nbparam_params
, cl_nbparam
- rvdw_switch
: cu_nbparam
, cl_nbparam_params
, cl_nbparam