Here is a list of all documented file members with links to the documentation:

- p -

• p_nbk_func_ener : nbnxn_kernel_common.h
• p_nbk_func_noener : nbnxn_kernel_common.h
• parallel_3dfft_execute_gpu_wrapper() : pme-gpu.cpp
• parse_common_args() : pargs.h
• parse_values_bool() : params.cpp
• parse_values_enum() : params.cpp
• parse_values_range() : params.cpp
• parse_values_std() : params.cpp
• parse_values_varnum() : params.cpp
• parse_values_varnum_expr() : params.cpp
• pbc_correct_dx_simd() : pbc-simd.h
• pbc_dx() : pbc.cpp
• pbc_dx_aiuc() : pbc-simd.h , pbc.cpp
• pbc_dx_d() : pbc.cpp
• pbc_rvec_sub() : bonded.cpp
• PCA_CAN_BEGIN : pargs.h
• PCA_CAN_DT : pargs.h
• PCA_CAN_END : pargs.h
• PCA_CAN_SET_DEFFNM : pargs.h
• PCA_CAN_TIME : pargs.h
• PCA_CAN_VIEW : pargs.h
• PCA_DISABLE_INPUT_FILE_CHECKING : pargs.h
• PCA_NOEXIT_ON_ARGS : pargs.h
• PCA_NOT_READ_NODE : pargs.h
• PCA_TIME_UNIT : pargs.h
• pdo_close_file() : gmx_wham.cpp
• pfree() : pmalloc_cuda.h
• place_child() : params.cpp
• please_cite() : pleasecite.h
• pmalloc() : pmalloc_cuda.h
• pmalloc_wc() : pmalloc_cuda.h
• pme_gpu_3dfft() : pme-gpu-internal.h
• pme_gpu_active() : pme-internal.h
• pme_gpu_alloc_energy_virial() : pme-gpu-internal.h
• pme_gpu_check_restrictions() : pme-gpu-internal.cpp
• pme_gpu_clear_energy_virial() : pme-gpu-internal.h
• pme_gpu_clear_grids() : pme-gpu-internal.h
• pme_gpu_copy_common_data_from() : pme-gpu-internal.cpp
• pme_gpu_copy_input_coordinates() : pme-gpu-internal.h
• pme_gpu_copy_input_forces() : pme-gpu-internal.h
• pme_gpu_copy_input_gather_atom_data() : pme-gpu-internal.h
• pme_gpu_copy_input_gather_grid() : pme-gpu-internal.h
• pme_gpu_copy_output_forces() : pme-gpu-internal.h
• pme_gpu_copy_output_spread_atom_data() : pme-gpu-internal.h
• pme_gpu_copy_output_spread_grid() : pme-gpu-internal.h
• pme_gpu_destroy() : pme-gpu-internal.cpp , pme-gpu-internal.h
• pme_gpu_destroy_3dfft() : pme-gpu-internal.h
• pme_gpu_destroy_specific() : pme-gpu-internal.h
• pme_gpu_destroy_sync_events() : pme-gpu-internal.h
• pme_gpu_finish_computation() : pme-gpu-internal.h
• pme_gpu_free_bspline_values() : pme-gpu-internal.h
• pme_gpu_free_coefficients() : pme-gpu-internal.h
• pme_gpu_free_coordinates() : pme-gpu-internal.h
• pme_gpu_free_energy_virial() : pme-gpu-internal.h
• pme_gpu_free_forces() : pme-gpu-internal.h
• pme_gpu_free_fract_shifts() : pme-gpu-internal.h
• pme_gpu_free_grid_indices() : pme-gpu-internal.h
• pme_gpu_free_grids() : pme-gpu-internal.h
• pme_gpu_free_spline_data() : pme-gpu-internal.h
• pme_gpu_gather() : pme-gpu-internal.h
• pme_gpu_get_atom_data_alignment() : pme-gpu-internal.h
• pme_gpu_get_atoms_per_warp() : pme-gpu-internal.h
• pme_gpu_get_energy_virial() : pme-gpu-internal.cpp , pme-gpu-internal.h
• pme_gpu_get_forces() : pme-gpu-internal.cpp , pme-gpu-internal.h
• pme_gpu_get_kernel_params_base_ptr() : pme-gpu-internal.cpp
• pme_gpu_get_real_grid_sizes() : pme-gpu-internal.cpp , pme-gpu-internal.h
• pme_gpu_get_staged_results() : pme-gpu.cpp
• pme_gpu_get_timings() : pme-gpu-internal.h , pme-gpu.cpp , pme.h
• pme_gpu_init() : pme-gpu-internal.cpp
• pme_gpu_init_internal() : pme-gpu-internal.h
• pme_gpu_init_sync_events() : pme-gpu-internal.h
• pme_gpu_is_testing() : pme-gpu-internal.h
• pme_gpu_launch_complex_transforms() : pme-gpu.cpp , pme.h
• pme_gpu_launch_gather() : pme-gpu.cpp , pme.h
• pme_gpu_launch_spread() : pme-gpu.cpp , pme.h
• pme_gpu_performs_FFT() : pme-gpu-internal.h
• pme_gpu_performs_gather() : pme-gpu-internal.h
• pme_gpu_performs_solve() : pme-gpu-internal.h
• pme_gpu_performs_wrapping() : pme-gpu-internal.h
• pme_gpu_prepare_computation() : pme-gpu.cpp , pme.h
• pme_gpu_realloc_and_copy_bspline_values() : pme-gpu-internal.h
• pme_gpu_realloc_and_copy_fract_shifts() : pme-gpu-internal.h
• pme_gpu_realloc_and_copy_input_coefficients() : pme-gpu-internal.h
• pme_gpu_realloc_coordinates() : pme-gpu-internal.h
• pme_gpu_realloc_forces() : pme-gpu-internal.h
• pme_gpu_realloc_grid_indices() : pme-gpu-internal.h
• pme_gpu_realloc_grids() : pme-gpu-internal.h
• pme_gpu_realloc_spline_data() : pme-gpu-internal.h
• pme_gpu_reinit() : pme-gpu-internal.cpp , pme-gpu-internal.h
• pme_gpu_reinit_3dfft() : pme-gpu-internal.h
• pme_gpu_reinit_atoms() : pme-gpu-internal.cpp , pme-gpu-internal.h
• pme_gpu_reinit_computation() : pme-gpu-internal.cpp , pme-gpu-internal.h
• pme_gpu_reinit_grids() : pme-gpu-internal.cpp
• pme_gpu_reinit_timings() : pme-gpu-internal.h
• pme_gpu_reset_timings() : pme-gpu-internal.h , pme-gpu.cpp , pme.h
• pme_gpu_set_testing() : pme-gpu-internal.h
• pme_gpu_solve() : pme-gpu-internal.h
• pme_gpu_spread() : pme-gpu-internal.h
• pme_gpu_stream_query() : pme-gpu-internal.h
• pme_gpu_supports_input() : pme-gpu.cpp , pme.h
• pme_gpu_sync_spread_grid() : pme-gpu-internal.h
• pme_gpu_synchronize() : pme-gpu-internal.h
• pme_gpu_task_enabled() : pme.h
• pme_gpu_transform_spline_atom_data() : pme-gpu-internal.cpp , pme-gpu-internal.h
• pme_gpu_try_finish_task() : pme-gpu.cpp , pme.h
• pme_gpu_update_input_box() : pme-gpu-internal.cpp , pme-gpu-internal.h
• pme_gpu_update_timings() : pme-gpu-internal.h
• pme_gpu_uses_dd() : pme-gpu-internal.h
• pme_gpu_wait_finish_task() : pme-gpu.cpp , pme.h
• pme_grid_points() : pme-load-balancing.cpp
• PME_GRID_QA : pme-internal.h
• pme_load_balance() : pme-load-balancing.cpp
• pme_loadbal_do() : pme-load-balancing.cpp , pme-load-balancing.h
• pme_loadbal_done() : pme-load-balancing.cpp , pme-load-balancing.h
• pme_loadbal_end() : pme-load-balancing.cpp
• pme_loadbal_increase_cutoff() : pme-load-balancing.cpp
• pme_loadbal_init() : pme-load-balancing.cpp , pme-load-balancing.h
• pme_loadbal_is_active() : pme-load-balancing.cpp , pme-load-balancing.h
• PME_ORDER_MAX : pme-internal.h
• pme_run_mode() : pme-gpu.cpp , pme.h
• PmeForceOutputHandling : pme.h
• PmeGpuKernelParams : pme-gpu-types.h
• PmeGpuSpecific : pme-gpu-types.h
• PmeLayoutTransform : pme-gpu-internal.h
• pmelblim_str : pme-load-balancing.cpp
• PmeRunMode : pme.h
• PmeSplineDataType : pme-gpu-internal.h
• PMETunePeriod : pme-load-balancing.cpp
• POS_ALL : poscalc.h
• POS_ALL_PBC : poscalc.h
• POS_ATOM : poscalc.h
• POS_COMPLMAX : poscalc.h
• POS_COMPLWHOLE : poscalc.h
• POS_DYNAMIC : poscalc.h
• POS_FORCES : poscalc.h
• POS_MASKONLY : poscalc.h
• POS_MASS : poscalc.h
• POS_MOL : poscalc.h
• POS_RES : poscalc.h
• POS_VALUE : selvalue.h
• POS_VELOCITIES : poscalc.h
• posres_wrapper() : position-restraints.cpp , position-restraints.h
• posres_wrapper_lambda() : position-restraints.cpp , position-restraints.h
• postprocess_item_subexpressions() : compiler.cpp
• pp_pme : domdec.h
• PP_PME_CHARGE : pme-pp-communication.h
• pr_beta() : minimize.cpp
• pr_double() : txtdump.h
• pr_doubles() : txtdump.h
• pr_indent() : txtdump.h
• pr_int() : txtdump.h
• pr_int64() : txtdump.h
• pr_real() : txtdump.h
• pr_reals() : txtdump.h
• pr_reals_of_dim() : txtdump.h
• pr_str() : txtdump.h
• pr_strings() : txtdump.h
• pr_title() : txtdump.h
• pr_title_n() : txtdump.h
• pr_title_nxn() : txtdump.h
• prepare_verlet_scheme() : runner.cpp
• preserve_box_shape() : state.h
• print_and_integrate() : integrate.h
• print_chi2_params() : expfit.cpp
• print_converged() : minimize.cpp
• print_dd_statistics() : domdec.h
• print_em_start() : minimize.cpp
• print_error_header() : domdec_topology.cpp
• print_grid() : pme-load-balancing.cpp
• print_group_info() : compiler.cpp
• print_histograms() : gmx_wham.cpp
• print_hw_opt() : resourcedivision.cpp
• print_IMD_error() : imdsocket.cpp
• print_ionlist() : swapcoords.cpp
• print_ionlist_legend() : swapcoords.cpp
• print_loadbal_limited() : pme-load-balancing.cpp
• print_missing_interactions_atoms() : domdec_topology.cpp
• print_missing_interactions_mb() : domdec_topology.cpp
• print_orires_log() : orires.h
• print_pme_loadbal_setting() : pme-load-balancing.cpp
• print_pme_loadbal_settings() : pme-load-balancing.cpp
• PrintTo() : confio.cpp
• process_const() : compiler.cpp
• prof_normalization_and_unit() : gmx_wham.cpp
• pull_calc_coms() : pull.h
• pull_constraint() : pull.h
• pull_conversion_factor_internal2userinput() : pull.h
• pull_conversion_factor_userinput2internal() : pull.h
• pull_coordinate_is_angletype() : pull.h
• pull_coordinate_units() : pull.h
• pull_have_constraint() : pull.h
• pull_have_potential() : pull.h
• pull_potential() : pull.h
• pull_print_output() : pull.h
• pullCheckPbcWithinGroups() : pull.h
• put_atoms_in_box() : pbc.cpp
• put_atoms_in_compact_unitcell() : pbc.cpp
• put_atoms_in_triclinic_unitcell() : pbc.cpp