- i -
- ImdOptions()
: ImdOptions
- Impl()
: gmx::AnalysisDataSimpleHistogramModule::Impl
, gmx::AnalysisDataLifetimeModule::Impl
, gmx::CommandLineHelpWriter::Impl
, gmx::OptionsAssigner::Impl
, gmx::SelectionCollection::Impl
, gmx::CommandLineModuleManager::Impl
, gmx::SelectionOptionManager::Impl
, gmx::SelectionParserSymbol::Impl
, gmx::test::MockAnalysisDataModule::Impl
, gmx::CommandLineParser::Impl
, gmx::SelectionParserSymbolIterator::Impl
, gmx::TextTableFormatter::Impl
, gmx::TrajectoryAnalysisModuleData::Impl
, gmx::TrajectoryAnalysisSettings::Impl
, gmx::AnalysisDataWeightedHistogramModule::Impl
, gmx::CommandLineHelpContext::Impl
, gmx::HelpManager::Impl
, gmx::TextReader::Impl
, gmx::test::TestReferenceChecker::Impl
, gmx::HelpLinks::Impl
, gmx::test::TestReferenceChecker::Impl
, gmx::test::TestFileManager::Impl
, gmx::CommandLineHelpContext::Impl
, gmx::HelpWriterContext::Impl
- includeAll()
: gmx::AnalysisHistogramSettingsInitializer
, gmx::AnalysisHistogramSettings
- includeCurrentDir()
: gmx::DataFileOptions
- includeDataset()
: gmx::test::AbstractTrajectoryAnalysisModuleTestFixture
- InconsistentInputError()
: gmx::InconsistentInputError
- increaseWeightSumIteration()
: gmx::PointState
- incrementNumUpdates()
: gmx::HistogramSize
- indent()
: gmx::RstParagraphIterator
, gmx::TextLineWrapperSettings
- index()
: gmx::AnalysisDataFrameHeader
, gmx::test::AnalysisDataTestInputPointSet
, gmx::test::AnalysisDataTestInputFrame
- indexed()
: gmx::AnalysisNeighborhoodPositions
- info()
: gmx::internal::OptionSectionImpl
- inInitialStage()
: gmx::BiasState
, gmx::HistogramSize
- init()
: gmx::AnalysisDataFrameLocalData< ValueType >
, gmx::internal::BasicHistogramImpl
, gmx::AbstractAverageHistogram
, gmx::AnalysisDataSimpleHistogramModule
, gmx::AnalysisDataWeightedHistogramModule
, gmx::AnalysisDataBinAverageModule
, gmx::CommandLineHelpModule
, gmx::ICommandLineModule
, gmx::anonymous_namespace{cmdlinemodulemanager.cpp}::CMainCommandLineModule
, gmx::ICommandLineOptionsModule
, gmx::UnionFinder
, anonymous_namespace{legacymodules.cpp}::ObsoleteToolModule
- initAfterFirstFrame()
: gmx::TrajectoryAnalysisModule
, gmx::analysismodules::anonymous_namespace{rdf.cpp}::Rdf
- initAnalysis()
: AnalysisTemplate
, gmx::TrajectoryAnalysisModule
, gmx::analysismodules::anonymous_namespace{freevolume.cpp}::FreeVolume
, gmx::analysismodules::anonymous_namespace{pairdist.cpp}::PairDistance
, gmx::analysismodules::anonymous_namespace{rdf.cpp}::Rdf
, gmx::analysismodules::anonymous_namespace{sasa.cpp}::Sasa
- initBehavior()
: gmx::IOptionsBehavior
, gmx::TimeUnitBehavior
, gmx::SelectionOptionBehavior
- initConverter()
: gmx::OptionStorageTemplateSimple< T >
- initCoveredFraction()
: gmx::internal::SelectionData
, gmx::Selection
- initEvaluation()
: gmx::PositionCalculationCollection
- initFirstFrame()
: gmx::TrajectoryAnalysisRunnerCommon
- initForceProviders()
: gmx::anonymous_namespace{electricfield.cpp}::ElectricField
, gmx::MDModules
, gmx::IMDModule
- initFrame()
: gmx::PositionCalculationCollection
, gmx::TrajectoryAnalysisRunnerCommon
- initFrameIndexGroup()
: gmx::TrajectoryAnalysisRunnerCommon
- initFromArray()
: gmx::test::CommandLine
- initGridPointState()
: gmx::BiasState
- initHistoryFromState()
: gmx::Awh
, gmx::Bias
, gmx::BiasState
- initializeAwhOutputFile()
: OutputFile
- initialized()
: gmx::test::TestReferenceChecker::Impl
- initializeFrictionOutputFile()
: OutputFile
- initializeMassesAndCharges()
: gmx::internal::SelectionData
- initManager()
: gmx::test::CommandLineModuleManagerTestBase
- initMdpOptions()
: gmx::anonymous_namespace{electricfield.cpp}::ElectricFieldData
, gmx::anonymous_namespace{electricfield.cpp}::ElectricField
, gmx::IMdpOptionProvider
- initMdpTransform()
: gmx::anonymous_namespace{electricfield.cpp}::ElectricField
, gmx::MDModules
, gmx::IMdpOptionProvider
- initOptions()
: gmx::AnalysisDataPlotSettings
, gmx::CommandLineCommonOptionsHolder
, gmx::ICommandLineOptionsModule
, gmx::SelectionCollection
, gmx::SelectionOptionBehavior
, gmx::SelectionOptionManager
, gmx::TrajectoryAnalysisModule
, gmx::analysismodules::anonymous_namespace{freevolume.cpp}::FreeVolume
, gmx::analysismodules::anonymous_namespace{pairdist.cpp}::PairDistance
, gmx::analysismodules::anonymous_namespace{rdf.cpp}::Rdf
, gmx::analysismodules::anonymous_namespace{sasa.cpp}::Sasa
, gmx::TrajectoryAnalysisRunnerCommon
, gmx::test::anonymous_namespace{testoptions.cpp}::TestOptionsRegistry
, gmx::test::TestOptionsProvider
, AnalysisTemplate
- initOriginalIdsToGroup()
: gmx::Selection
- initOutput()
: gmx::anonymous_namespace{electricfield.cpp}::ElectricField
, gmx::IMDOutputProvider
- initRefCountArray()
: gmx::analysismodules::anonymous_namespace{pairdist.cpp}::PairDistanceModuleData
- initSearch()
: gmx::AnalysisNeighborhood
- initStorage()
: gmx::IOptionSectionStorage
, gmx::RepeatingOptionSectionStorage< T >
- initTopology()
: gmx::TrajectoryAnalysisRunnerCommon
- initWithGroupIndices()
: gmx::MappedUnionFinder
- inputFile()
: gmx::FileNameOption
- inputOutputFile()
: gmx::FileNameOption
- inputStream()
: gmx::test::InteractiveTestHelper
- inSection()
: gmx::OptionsAssigner::Impl
- insertCalculation()
: gmx::PositionCalculationCollection::Impl
- installationPrefix()
: gmx::test::anonymous_namespace{testinit.cpp}::TestProgramContext
, gmx::CommandLineProgramContext
, gmx::anonymous_namespace{programcontext.cpp}::DefaultProgramContext
, gmx::IProgramContext
- InstallationPrefixInfo()
: gmx::InstallationPrefixInfo
- instance()
: gmx::StandardInputStream
- Int64Option()
: gmx::Int64Option
- Int64OptionInfo()
: gmx::Int64OptionInfo
- Int64OptionStorage()
: gmx::Int64OptionStorage
- inTargetRegion()
: gmx::PointState
- integerBins()
: gmx::AnalysisHistogramSettingsInitializer
- IntegerOption()
: gmx::IntegerOption
- IntegerOptionInfo()
: gmx::IntegerOptionInfo
- IntegerOptionStorage()
: gmx::IntegerOptionStorage
- InteractiveTestHelper()
: gmx::test::InteractiveTestHelper
- InternalError()
: gmx::InternalError
- InvalidInputError()
: gmx::InvalidInputError
- inverseTimeScaleFactor()
: gmx::TimeUnitManager
- isAllocated()
: gmx::AbstractAnalysisArrayData
- isAtRootTopic()
: gmx::HelpManager::Impl
- isAvailable()
: gmx::internal::AnalysisDataStorageFrameData
- isBoolean()
: gmx::AbstractOptionStorage
- isCheckCoveringStep()
: gmx::BiasParams
- isCheckHistogramForAnomaliesStep()
: gmx::BiasParams
- isCompletionExport()
: gmx::CommandLineHelpContext
- isContext()
: gmx::anonymous_namespace{exceptions.cpp}::ErrorMessage
- isCoveredFractionDynamic()
: gmx::internal::SelectionData
, gmx::Selection
- isDirectoryOption()
: gmx::FileNameOptionInfo
, gmx::FileNameOptionStorage
- isDouble()
: gmx::test::FloatingPointDifference
- isDynamic()
: gmx::Selection
, gmx::analysismodules::anonymous_namespace{angle.cpp}::AnglePositionIterator
, gmx::internal::SelectionData
- isEmpty()
: gmx::MessageStringCollector
, gmx::Variant
- isEnumerated()
: gmx::StringOptionInfo
- isFileOpen()
: gmx::AbstractPlotModule
- isFinished()
: gmx::internal::AnalysisDataStorageFrameData
- isHidden()
: gmx::AbstractOptionStorage
, gmx::OptionInfo
- isInitialized()
: gmx::TrajectoryAnalysisModuleData::Impl
, gmx::AnalysisDataFrameLocalData< ValueType >
- isInputFile()
: gmx::FileNameOptionStorage
, gmx::FileNameOptionInfo
- isInputOutputFile()
: gmx::FileNameOptionStorage
, gmx::FileNameOptionInfo
- isInteractive()
: gmx::StandardInputStream
- isLibraryFile()
: gmx::FileNameOptionInfo
, gmx::FileNameOptionStorage
- isMultipoint()
: gmx::test::AnalysisDataTestInput
, gmx::internal::AnalysisDataStorageImpl
, gmx::AbstractAnalysisData
- isNaN()
: gmx::test::FloatingPointDifference
- isNotified()
: gmx::internal::AnalysisDataStorageFrameData
- isOutputFile()
: gmx::FileNameOptionInfo
, gmx::FileNameOptionStorage
- isPeriodic()
: gmx::GridAxis
- isPresent()
: gmx::AnalysisDataValue
- isRequired()
: gmx::OptionInfo
, gmx::AbstractOptionStorage
- isSampleCoordStep()
: gmx::BiasParams
- isSet()
: gmx::AnalysisDataValue
, gmx::OptionInfo
, gmx::AbstractOptionStorage
- isStarted()
: gmx::internal::AnalysisDataStorageFrameData
- isSupported()
: gmx::Regex
- isThisSystem()
: gmx::HardwareTopology
- isTime()
: gmx::FloatOptionInfo
, gmx::DoubleOptionInfo
, gmx::FloatOptionStorage
, gmx::DoubleOptionStorage
- isTrajectoryOption()
: gmx::FileNameOptionStorage
, gmx::FileNameOptionInfo
- isTrivial()
: gmx::TextLineWrapper
- isType()
: gmx::OptionInfo
, gmx::Variant
- isUpdateFreeEnergyStep()
: gmx::BiasParams
- isUpdateTargetStep()
: gmx::BiasParams
- isValid()
: gmx::AnalysisDataFrameRef
, gmx::AnalysisDataHandle
, gmx::AnalysisDataFrameHeader
, gmx::AnalysisNeighborhoodPair
, gmx::Selection
, gmx::test::TestReferenceChecker
- isValidType()
: gmx::FileNameOptionStorage
, gmx::FileNameOptionInfo
, gmx::anonymous_namespace{filenameoption.cpp}::FileTypeHandler
- isVector()
: gmx::AbstractOptionStorage
, gmx::AbstractOption
- isWithin()
: gmx::test::FloatingPointTolerance
, gmx::AnalysisNeighborhoodSearch