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src
programs
mdrun
mdrun → gromacs Relation
File in src/programs/mdrun
Includes file in src/gromacs
tests
/
compressed_x_output.cpp
options
/
filenameoption.h
deform.h
utility
/
basedefinitions.h
tests
/
energyreader.cpp
utility
/
exceptions.h
tests
/
energyreader.cpp
utility
/
stringutil.h
tests
/
energyreader.h
utility
/
unique_cptr.h
tests
/
initialconstraints.cpp
utility
/
stringutil.h
md.cpp
mdtypes
/
awh-history.h
md.cpp
mdtypes
/
awh-params.h
md.cpp
awh
/
awh.h
md.cpp
utility
/
basedefinitions.h
md.cpp
utility
/
cstringutil.h
md.cpp
domdec
/
domdec.h
md.cpp
domdec
/
domdec_network.h
md.cpp
domdec
/
domdec_struct.h
md.cpp
essentialdynamics
/
edsam.h
md.cpp
mdtypes
/
energyhistory.h
md.cpp
utility
/
fatalerror.h
md.cpp
commandline
/
filenm.h
md.cpp
math
/
functions.h
md.cpp
gpu_utils
/
gpu_utils.h
md.cpp
imd
/
imd.h
md.cpp
utility
/
logger.h
md.cpp
compat
/
make_unique.h
md.cpp
listed-forces
/
manage-threading.h
md.cpp
mdtypes
/
md_enums.h
md.cpp
mdlib
/
mdrun.h
md.cpp
mdlib
/
nb_verlet.h
md.cpp
mdlib
/
nbnxn_gpu_data_mgmt.h
md.cpp
mdtypes
/
observableshistory.h
md.cpp
ewald
/
pme-load-balancing.h
md.cpp
ewald
/
pme.h
md.cpp
pulling
/
pull.h
md.cpp
utility
/
real.h
md.cpp
mdlib
/
simulationsignal.h
md.cpp
utility
/
smalloc.h
md.cpp
mdtypes
/
state.h
md.cpp
swap
/
swapcoords.h
mdrun.cpp
utility
/
arraysize.h
mdrun.cpp
domdec
/
domdec.h
mdrun.cpp
utility
/
fatalerror.h
mdrun.cpp
commandline
/
filenm.h
mdrun.cpp
mdrunutility
/
handlerestart.h
mdrun.cpp
mdlib
/
mdrun.h
mdrun.cpp
commandline
/
pargs.h
mdrun.cpp
utility
/
smalloc.h
tests
/
mdruncomparisonfixture.cpp
utility
/
stringutil.h
membed.cpp
utility
/
cstringutil.h
membed.cpp
utility
/
exceptions.h
membed.cpp
utility
/
fatalerror.h
membed.cpp
commandline
/
filenm.h
membed.cpp
utility
/
filestream.h
membed.cpp
utility
/
futil.h
membed.cpp
mdtypes
/
md_enums.h
membed.cpp
topology
/
mtop_lookup.h
membed.cpp
utility
/
smalloc.h
membed.cpp
mdtypes
/
state.h
membed.h
utility
/
real.h
tests
/
moduletest.cpp
utility
/
basedefinitions.h
tests
/
moduletest.cpp
utility
/
basenetwork.h
tests
/
moduletest.cpp
options
/
basicoptions.h
tests
/
moduletest.cpp
utility
/
gmxmpi.h
tests
/
moduletest.cpp
options
/
ioptionscontainer.h
tests
/
moduletest.cpp
utility
/
textwriter.h
tests
/
moduletest.h
utility
/
classhelpers.h
tests
/
multisimtest.cpp
utility
/
basenetwork.h
tests
/
multisimtest.cpp
utility
/
path.h
tests
/
multisimtest.cpp
utility
/
real.h
tests
/
multisimtest.cpp
utility
/
stringutil.h
tests
/
pmetest.cpp
utility
/
cstringutil.h
tests
/
pmetest.cpp
utility
/
gmxmpi.h
tests
/
pmetest.cpp
gpu_utils
/
gpu_utils.h
tests
/
pmetest.cpp
utility
/
stringutil.h
repl_ex.cpp
domdec
/
domdec.h
repl_ex.cpp
utility
/
fatalerror.h
repl_ex.cpp
mdtypes
/
md_enums.h
repl_ex.cpp
utility
/
pleasecite.h
repl_ex.cpp
utility
/
smalloc.h
repl_ex.cpp
mdtypes
/
state.h
repl_ex.cpp
random
/
threefry.h
repl_ex.cpp
random
/
uniformintdistribution.h
repl_ex.cpp
random
/
uniformrealdistribution.h
repl_ex.h
utility
/
basedefinitions.h
repl_ex.h
utility
/
real.h
tests
/
replicaexchange.cpp
utility
/
path.h
tests
/
replicaexchange.cpp
utility
/
stringutil.h
tests
/
rerun.cpp
options
/
filenameoption.h
runner.cpp
hardware
/
cpuinfo.h
runner.cpp
utility
/
cstringutil.h
runner.cpp
taskassignment
/
decidegpuusage.h
runner.cpp
listed-forces
/
disre.h
runner.cpp
domdec
/
domdec.h
runner.cpp
domdec
/
domdec_struct.h
runner.cpp
ewald
/
ewald-utils.h
runner.cpp
utility
/
exceptions.h
runner.cpp
utility
/
fatalerror.h
runner.cpp
commandline
/
filenm.h
runner.cpp
utility
/
filestream.h
runner.cpp
math
/
functions.h
runner.cpp
utility
/
gmxassert.h
runner.cpp
utility
/
gmxmpi.h
runner.cpp
gpu_utils
/
gpu_utils.h
runner.cpp
utility
/
logger.h
runner.cpp
utility
/
loggerbuilder.h
runner.cpp
mdtypes
/
md_enums.h
runner.cpp
mdrunutility
/
mdmodules.h
runner.cpp
mdlib
/
mdrun.h
runner.cpp
mdlib
/
nb_verlet.h
runner.cpp
mdlib
/
nbnxn_gpu_data_mgmt.h
runner.cpp
mdlib
/
nbnxn_tuning.h
runner.cpp
mdtypes
/
observableshistory.h
runner.cpp
listed-forces
/
orires.h
runner.cpp
utility
/
pleasecite.h
runner.cpp
ewald
/
pme.h
runner.cpp
utility
/
programcontext.h
runner.cpp
pulling
/
pull.h
runner.cpp
pulling
/
pull_rotation.h
runner.cpp
taskassignment
/
resourcedivision.h
runner.cpp
utility
/
smalloc.h
runner.cpp
mdtypes
/
state.h
runner.cpp
utility
/
stringutil.h
runner.cpp
taskassignment
/
taskassignment.h
runner.cpp
mdrunutility
/
threadaffinity.h
runner.cpp
taskassignment
/
usergpuids.h
runner.h
utility
/
basedefinitions.h
runner.h
domdec
/
domdec.h
runner.h
commandline
/
filenm.h
runner.h
mdlib
/
mdrun.h
runner.h
utility
/
real.h
tests
/
tabulated_bonded_interactions.cpp
utility
/
stringutil.h
tests
/
tabulated_bonded_interactions.cpp
utility
/
textwriter.h
tests
/
terminationhelper.cpp
utility
/
path.h
tests
/
trajectory_writing.cpp
options
/
filenameoption.h
tests
/
trajectory_writing.cpp
utility
/
stringutil.h
tests
/
trajectoryreader.cpp
utility
/
exceptions.h
tests
/
trajectoryreader.cpp
utility
/
stringutil.h
tests
/
trajectoryreader.h
utility
/
unique_cptr.h
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