Here is a list of all documented class members with links to the class documentation for each member:
- f -
- f
: gmx_pme_pp
, t_gmx_IMD
, em_state_t
, gmx::SelectionPosition
, cu_atomdata
, f_thread_t
, cl_atomdata
, gmx_ana_pos_t
- f_elem_size
: cl_atomdata
- f_ind
: t_gmx_IMD
- f_nalloc
: f_thread_t
- f_t
: bonded_threading_t
- FactoryMethod
: gmx::ICommandLineOptionsModule
- family()
: gmx::CpuInfo
- fbox_diag
: t_pbc
- feature()
: gmx::CpuInfo
- Feature
: gmx::CpuInfo
- Features
: gmx::CpuInfo
- featureSet()
: gmx::CpuInfo
- featureString()
: gmx::CpuInfo
- fep_state
: t_state
- fetchNextEvent()
: GpuRegionTimerImpl< framework >
, GpuRegionTimerWrapper< framework >
, GpuRegionTimerImpl< GpuFramework::OpenCL >
- file
: gmx::ThrowLocation
- file_
: gmx::HelpWriterContext::Impl::SharedState
- fileExists()
: gmx::anonymous_namespace{fileredirector.cpp}::DefaultInputRedirector
, gmx::IFileInputRedirector
, gmx::test::TestFileInputRedirector
- FileIOError()
: gmx::FileIOError
- fileManager()
: gmx::test::CommandLineTestBase
- fileManager_
: gmx::test::MdrunTestFixture
- FileNameList
: gmx::test::TestFileManager::Impl
- FileNameOption()
: gmx::FileNameOption
- FileNameOptionInfo()
: gmx::FileNameOptionInfo
- FileNameOptionStorage
: gmx::FileNameOption
, gmx::FileNameOptionStorage
- filenmToOptions()
: gmx::anonymous_namespace{pargs.cpp}::OptionsAdapter
- files_
: gmx::test::TestFileManager::Impl
- filetype()
: gmx::FileNameOption
- fileType
: gmx::anonymous_namespace{filenameoption.cpp}::FileTypeMapping
- FileTypeHandler()
: gmx::anonymous_namespace{filenameoption.cpp}::FileTypeHandler
- fileTypes()
: gmx::FileNameOptionInfo
, gmx::FileNameOptionStorage
- fillInput()
: gmx::anonymous_namespace{hostallocator.cpp}::HostMemoryTest< T >
- fillNameIfMissing()
: gmx::SelectionTreeElement
- FilterType
: gmx::anonymous_namespace{cmdlinehelpwriter.cpp}::OptionsFilter
- finalizeSignals()
: gmx::SimulationSignaller
- findBin()
: gmx::AnalysisHistogramSettings
- findEntry()
: gmx::test::TestReferenceChecker::Impl
- findFile()
: gmx::DataFileFinder
- findModuleByName()
: gmx::CommandLineModuleManager::Impl
- findNextLine()
: gmx::TextLineWrapper
- findNextPair()
: gmx::AnalysisNeighborhoodPairSearch
- findOption()
: gmx::internal::OptionSectionImpl
, gmx::OptionsAssigner::Impl
- findOrCreateEntry()
: gmx::test::TestReferenceChecker::Impl
- findSection()
: gmx::internal::OptionSectionImpl
- findSubTopic()
: gmx::AbstractCompositeHelpTopic
, gmx::IHelpTopic
, gmx::anonymous_namespace{cmdlinehelpmodule.cpp}::CommandsHelpTopic
, gmx::anonymous_namespace{cmdlinehelpmodule.cpp}::ModuleHelpTopic
, gmx::AbstractSimpleHelpTopic
- findSymbol()
: gmx::SelectionParserSymbolTable
- finish()
: gmx::AnalysisDataFrameAverager
, gmx::anonymous_namespace{cmdlinehelpwriter.cpp}::SynopsisFormatter
, gmx::AbstractOptionStorage
, gmx::internal::OptionSectionImpl
, gmx::Options
, gmx::OptionsAssigner
, gmx::anonymous_namespace{analysismodule.cpp}::TrajectoryAnalysisModuleDataBasic
, gmx::TrajectoryAnalysisModuleData
, gmx::analysismodules::anonymous_namespace{pairdist.cpp}::PairDistanceModuleData
, gmx::analysismodules::anonymous_namespace{rdf.cpp}::RdfModuleData
, gmx::analysismodules::anonymous_namespace{sasa.cpp}::SasaModuleData
- finishAnalysis()
: gmx::TrajectoryAnalysisModule
, gmx::analysismodules::anonymous_namespace{freevolume.cpp}::FreeVolume
, gmx::analysismodules::anonymous_namespace{pairdist.cpp}::PairDistance
, gmx::analysismodules::anonymous_namespace{rdf.cpp}::Rdf
, gmx::analysismodules::anonymous_namespace{sasa.cpp}::Sasa
, AnalysisTemplate
- finishContext()
: gmx::MessageStringCollector
- finishData()
: gmx::AnalysisData
, gmx::AnalysisDataHandle
- finishDataHandles()
: gmx::TrajectoryAnalysisModuleData
- finishDataStorage()
: gmx::AnalysisDataStorage
- finishFrame()
: gmx::AnalysisDataHandle
, gmx::internal::AnalysisDataStorageImpl
, gmx::internal::AnalysisDataStorageFrameData
, gmx::AnalysisDataStorageFrame
, gmx::AnalysisDataStorage
- finishFrames()
: gmx::TrajectoryAnalysisModule
- finishFrameSerial()
: gmx::AnalysisData
, gmx::internal::AnalysisDataStorageImpl
, gmx::AnalysisDataStorage
, gmx::TrajectoryAnalysisModule
- finishModuleExport()
: gmx::anonymous_namespace{cmdlinehelpmodule.cpp}::IHelpExport
, gmx::anonymous_namespace{cmdlinehelpmodule.cpp}::HelpExportReStructuredText
, gmx::anonymous_namespace{cmdlinehelpmodule.cpp}::HelpExportCompletion
- finishModuleGroupExport()
: gmx::anonymous_namespace{cmdlinehelpmodule.cpp}::IHelpExport
, gmx::anonymous_namespace{cmdlinehelpmodule.cpp}::HelpExportReStructuredText
, gmx::anonymous_namespace{cmdlinehelpmodule.cpp}::HelpExportCompletion
- finishOption()
: gmx::OptionsAssigner
- finishOptions()
: gmx::CommandLineCommonOptionsHolder
- finishOutput()
: gmx::anonymous_namespace{electricfield.cpp}::ElectricField
, gmx::IMDOutputProvider
- finishPointSet()
: gmx::AnalysisDataHandle
, gmx::AnalysisDataStorageFrame
- finishReferenceFrame()
: gmx::test::MockAnalysisDataModule::Impl
- finishReferenceFrameSerial()
: gmx::test::MockAnalysisDataModule::Impl
- finishSection()
: gmx::anonymous_namespace{cmdlinehelpwriter.cpp}::OptionsListFormatter
, gmx::IOptionSectionStorage
, gmx::OptionsAssigner
, gmx::RepeatingOptionSectionStorage< T >
- finishSet()
: gmx::AbstractOptionStorage
- first_
: gmx::PositionCalculationCollection::Impl
- firstColumn()
: gmx::AnalysisDataPointSetRef
, gmx::test::AnalysisDataTestInputPointSet
- firstColumnIndent_
: gmx::TextTableFormatter::Impl
- firstEdge()
: gmx::AnalysisHistogramSettings
- firstFrameLocation_
: gmx::internal::AnalysisDataStorageImpl
- firstLine()
: gmx::TextTableFormatter::Impl::ColumnData
- firstLine_
: gmx::TextTableFormatter::Impl::ColumnData
- firstLineIndent()
: gmx::RstParagraphIterator
, gmx::TextLineWrapperSettings
- firstStoredIndex()
: gmx::internal::AnalysisDataStorageImpl
- firstUnnotifiedIndex()
: gmx::internal::AnalysisDataStorageImpl
- firstUnnotifiedIndex_
: gmx::internal::AnalysisDataStorageImpl
- firstx_
: gmx::AnalysisDataLifetimeModule::Impl
- Flag
: gmx::IAnalysisDataModule
- flag
: t_filenm
- flags
: gmx_pme_comm_n_box_t
, t_state
, t_compiler_data
, gmx_ana_poscalc_t
, gmx::SelectionTreeElement
, gmx_ana_selmethod_t
, gmx_ana_selparam_t
, t_compare_value
, t_methoddata_pos
, gmx::TrajectoryAnalysisSettings::Impl
, gmx::IAnalysisDataModule
, gmx::AnalysisDataModuleSerial
, gmx::AnalysisDataModuleParallel
, gmx::AnalysisDataProxy
, gmx::AnalysisDataAverageModule
, gmx::AnalysisDataFrameAverageModule
, gmx::AnalysisDataDisplacementModule
, gmx::internal::BasicAverageHistogramModule
, gmx::AnalysisDataSimpleHistogramModule
, gmx::AnalysisDataWeightedHistogramModule
, gmx::AnalysisDataBinAverageModule
, gmx::AnalysisDataLifetimeModule
, gmx::AbstractPlotModule
, gmx::TrajectoryAnalysisSettings
, gmx::analysismodules::anonymous_namespace{select.cpp}::IndexFileWriterModule
- flags_
: gmx::test::MockAnalysisDataModule::Impl
- FlagsTemplate()
: gmx::FlagsTemplate< FlagType >
- FloatingPointDifference()
: gmx::test::FloatingPointDifference
- FloatingPointTolerance()
: gmx::test::FloatingPointTolerance
- FloatOption()
: gmx::FloatOption
- FloatOptionInfo()
: gmx::FloatOptionInfo
- FloatOptionStorage
: gmx::FloatOption
, gmx::FloatOptionStorage
- fluxfromAtoB
: swap_group
- fluxleak
: t_swap
- fmax
: em_state_t
- fn
: t_filenm
- fnorm
: em_state_t
- fnPullx
: t_UmbrellaOptions
- fns
: t_filenm
- foldLastColumnToNextLineIndent_
: gmx::TextTableFormatter::Impl
- force
: InterdependentTask
- force_
: gmx::ForceWithVirial
- forceAv
: t_UmbrellaWindow
- forceCorrelationGrid()
: gmx::Bias
- forces()
: gmx::Selection
- forcesendbuf
: t_gmx_IMD
- ForceWithVirial()
: gmx::ForceWithVirial
- format_
: gmx::HelpLinks::Impl
, gmx::HelpWriterContext::Impl::SharedState
- formatBugs()
: gmx::CommandLineHelpWriter::Impl
- formatDescription()
: gmx::OptionInfo
- formatExtraDescription()
: gmx::FileNameOptionStorage
, gmx::AbstractOptionStorage
, gmx::StringOptionStorage
, gmx::EnumOptionStorage
- formatLine()
: gmx::TextLineWrapper
- formatOption()
: gmx::anonymous_namespace{cmdlinehelpwriter.cpp}::IOptionsFormatter
, gmx::anonymous_namespace{cmdlinehelpwriter.cpp}::SynopsisFormatter
, gmx::anonymous_namespace{cmdlinehelpwriter.cpp}::OptionsListFormatter
- formatRow()
: gmx::TextTableFormatter
- formatSelected()
: gmx::anonymous_namespace{cmdlinehelpwriter.cpp}::OptionsFilter
- formatSingleValue()
: gmx::BooleanOptionStorage
, gmx::Int64OptionStorage
, gmx::DoubleOptionStorage
, gmx::FloatOptionStorage
, gmx::EnumOptionStorage
, gmx::FileNameOptionStorage
, gmx::OptionStorageTemplate< T >
, gmx::SelectionOptionStorage
, anonymous_namespace{abstractoptionstorage.cpp}::MockOptionStorage
, gmx::StringOptionStorage
, gmx::IntegerOptionStorage
- fpout
: t_swap
- fr
: gmx_sel_evaluate_t
, gmx::SelMethodEvalContext
- frame()
: gmx::test::TrajectoryFrameReader
, gmx::test::AnalysisDataTestInput
, gmx::TrajectoryAnalysisRunnerCommon
, gmx::test::EnergyFrameReader
- frame_
: gmx::test::TrajectoryFrame
- FrameBuilderList
: gmx::internal::AnalysisDataStorageImpl
- frameChecker_
: gmx::test::MockAnalysisDataModule::Impl
- frameCount()
: gmx::AnalysisDataWeightedHistogramModule
, gmx::AnalysisDataStorage
, gmx::AbstractAnalysisData
, gmx::AnalysisData
, gmx::AnalysisDataFrameLocalData< ValueType >
, gmx::AnalysisDataFrameAverageModule
, gmx::AnalysisDataSimpleHistogramModule
, gmx::test::AnalysisDataTestInput
, gmx::AbstractAnalysisArrayData
, gmx::AnalysisDataProxy
- frameCount_
: gmx::AnalysisDataLifetimeModule::Impl
- frameData()
: gmx::AnalysisDataFrameLocalData< ValueType >
- frameDataSet()
: gmx::AnalysisDataFrameLocalData< ValueType >
- frameFinished()
: gmx::AnalysisDataModuleSerial
, gmx::AnalysisDataFrameAverageModule
, gmx::AnalysisDataLifetimeModule
, gmx::AnalysisDataDisplacementModule
, gmx::analysismodules::anonymous_namespace{select.cpp}::IndexFileWriterModule
, gmx::internal::BasicAverageHistogramModule
, gmx::AnalysisDataProxy
, gmx::AnalysisDataModuleParallel
, gmx::AnalysisDataBinAverageModule
, gmx::AnalysisDataWeightedHistogramModule
, gmx::IAnalysisDataModule
, gmx::AnalysisDataAverageModule
, gmx::AnalysisDataSimpleHistogramModule
, gmx::AbstractPlotModule
- frameFinishedSerial()
: gmx::AnalysisDataModuleParallel
, gmx::AnalysisDataSimpleHistogramModule
, gmx::IAnalysisDataModule
, gmx::AnalysisDataProxy
, gmx::AnalysisDataWeightedHistogramModule
- FrameHandle
: gmx::AnalysisDataFrameLocalData< ValueType >
- frameIndex()
: gmx::AnalysisDataFrameRef
, gmx::internal::AnalysisDataStorageFrameData
, gmx::AnalysisDataPointSetRef
- frameIndex_
: gmx::test::MockAnalysisDataModule::Impl
- FrameList
: gmx::internal::AnalysisDataStorageImpl
- FrameLocalData
: gmx::AnalysisDataSimpleHistogramModule::Impl
, gmx::AnalysisDataWeightedHistogramModule::Impl
- FramePointer
: gmx::internal::AnalysisDataStorageImpl
- frameReference()
: gmx::internal::AnalysisDataStorageFrameData
- frames_
: gmx::internal::AnalysisDataStorageImpl
- frameStarted()
: gmx::AnalysisDataModuleParallel
, gmx::AnalysisDataBinAverageModule
, gmx::AbstractPlotModule
, gmx::AnalysisDataModuleSerial
, gmx::IAnalysisDataModule
, gmx::AnalysisDataLifetimeModule
, gmx::analysismodules::anonymous_namespace{select.cpp}::IndexFileWriterModule
, gmx::AnalysisDataDisplacementModule
, gmx::AnalysisDataProxy
, gmx::AnalysisDataSimpleHistogramModule
, gmx::internal::BasicAverageHistogramModule
, gmx::AnalysisDataAverageModule
, gmx::AnalysisDataWeightedHistogramModule
, gmx::AnalysisDataFrameAverageModule
- free()
: gmx::HostAllocationPolicy
, gmx::AlignedAllocationPolicy
, gmx::PageAlignedAllocationPolicy
, gmx_ana_selmethod_t
- freeCompilerData()
: gmx::SelectionTreeElement
- freeEnergy()
: gmx::PointState
- freeEnergyCutoffInKT
: gmx::BiasParams
- freeExpressionData()
: gmx::SelectionTreeElement
- freeptr
: gmx_sel_mempool_t
- freesize
: gmx_sel_mempool_t
- freeValues()
: gmx::SelectionTreeElement
- frflags
: gmx::TrajectoryAnalysisSettings::Impl
, gmx::TrajectoryAnalysisSettings
- frictionOutputFile()
: BiasReader
- from()
: gmx::KeyValueTreeTransformRuleBuilder
- front()
: gmx::internal::SimdArrayRef< T >
, gmx::ArrayRef< T >
- fsh
: PmeShared
- fshift
: cl_nb_staging
, cu_atomdata
, f_thread_t
, cl_atomdata
, nb_staging
, VsiteThread
- fshift_elem_size
: cl_atomdata
- ftp
: t_filenm
- ftype
: ilist_data_t
- Fujitsu
: gmx::CpuInfo
- Fujitsu_HpcAce
: gmx::CpuInfo
- Full
: gmx::HardwareTopology
- fullBinaryPath()
: gmx::CommandLineProgramContext
, gmx::IProgramContext
, gmx::test::anonymous_namespace{testinit.cpp}::TestProgramContext
, gmx::anonymous_namespace{programcontext.cpp}::DefaultProgramContext
- fullFilename_
: gmx::test::internal::TestReferenceDataImpl
- FullWithDevices
: gmx::HardwareTopology
- func
: gmx::HardwareTopology::Device
, gmx::ThrowLocation
- function
: gmx::NumericalSplineTableInput
, gmx::AnalyticalSplineTableInput
- futureResult_
: gmx::test::anonymous_namespace{mutex.cpp}::DifferentTasksTest
- fvir_prev
: t_state