Collaboration diagram for Testing Utilities (testutils):

Description

Common helper classes and functions for writing tests using Google Test.

General documentation for the testing in GROMACS can be found in the developer guide. This page provides an overview of the actual API provided by the testutils module.

There are several distinct functionalities provided:

gmx::test::TestFileManager (in testfilemanager.h) provides functionality for locating test input files from the source directory and managing temporary files that need to be created during the test.
gmx::test::TestFileInputRedirector (in testfileredirector.h) provides functionality for capturing file existence checks in code that uses gmx::IFileInputRedirector.
gmx::test::TestFileOutputRedirector (in testfileredirector.h) provides functionality for capturing file output (including stdout) from code that uses gmx::IFileOutputRedirector, and checking that output against reference data.
gmx::test::InteractiveTestHelper (in interactivetest.h) provides a helper class for testing an interactive session that uses gmx::TextInputStream and gmx::TextOutputStream for prompting input and printing status messages.
GMX_TEST_OPTIONS macro provides facilities for adding custom command line options for the test binary.
testasserts.h provides several custom test assertions for better exception and floating-point handling than built-in Google Test assertions.
gmx::test::TestReferenceData and related classes (in refdata.h) provide utilities to write regression-style tests that check that the test produces the same results as an earlier run of the same test. See Using reference data in C++ tests for more details.
gmx::test::CommandLine and related classes (in cmdlinetest.h) provide utilities for constructing command line argument arrays for use in tests that invoke actual commands. The same header also provides gmx::test::CommandLineTestHelper and gmx::test::CommandLineTestBase for easily creating tests that execute essentially full command-line programs, including checking the output files produced.
gmx::test::StringTestBase provides a test fixture for tests that need to test long strings for correctness.
gmx::test::StdioTestHelper provides a helper class for tests that need to execute legacy code where stdin reading cannot be easily mocked.

Additionally, testinit.h and mpi_printer.h, and their corresponding source files, provide functionality that is not visible on the API level: they provide initialization routines for the above functionality, which are automatically called by the main() function provided in unittest_main.cpp.

mpi_printer.h provides a Google Test listener that is installed when the tests are compiled with MPI. This listener allows the test binary to be run on multiple MPI ranks, and synchronizes the execution and output from the test cases, as well as makes the test fail on even if an assertion fails only on one rank.

Assertions for exceptions
These macros replace `(ASSERT\|EXPECT)(_NO)?_THROW` from Google Test. They are used exactly like the Google Test ones, but also print details of any unexpected exceptions using GROMACS-specific routines. This makes it much easier to see at one glance what went wrong. See Google Test documentation for details on how to use the macros.
#define	EXPECT_THROW_GMX(statement, expected_exception)
	Asserts that a statement throws a given exception.

#define	EXPECT_NO_THROW_GMX(statement)
	Asserts that a statement does not throw.

#define	ASSERT_THROW_GMX(statement, expected_exception)
	Asserts that a statement throws a given exception.

#define	ASSERT_NO_THROW_GMX(statement)
	Asserts that a statement does not throw.

Assertions for floating-point comparison
These routines extend `(EXPECT\|ASSERT)_(FLOAT\|DOUBLE)_EQ` and `(EXPECT\|ASSERT)_NEAR` from Google Test to provide more flexible assertions for floating-point values. See gmx::test::FloatingPointTolerance for the possible ways to specify the tolerance, and gmx::test::FloatingPointDifference for some additional details of the difference calculation.
#define	EXPECT_FLOAT_EQ_TOL(value1, value2, tolerance)
	Asserts that two single-precision values are within the given tolerance.

#define	EXPECT_DOUBLE_EQ_TOL(value1, value2, tolerance)
	Asserts that two double-precision values are within the given tolerance.

#define	EXPECT_REAL_EQ_TOL(value1, value2, tolerance)
	Asserts that two `real` values are within the given tolerance.

#define	ASSERT_FLOAT_EQ_TOL(value1, value2, tolerance)
	Asserts that two single-precision values are within the given tolerance.

#define	ASSERT_DOUBLE_EQ_TOL(value1, value2, tolerance)
	Asserts that two double-precision values are within the given tolerance.

#define	ASSERT_REAL_EQ_TOL(value1, value2, tolerance)
	Asserts that two `real` values are within the given tolerance.

#define	EXPECT_REAL_EQ(value1, value2) EXPECT_REAL_EQ_TOL(value1, value2, ::gmx::test::defaultRealTolerance())
	EXPECT_REAL_EQ_TOL with default tolerance.

#define	ASSERT_REAL_EQ(value1, value2) ASSERT_REAL_EQ_TOL(value1, value2, ::gmx::test::defaultRealTolerance())
	ASSERT_REAL_EQ_TOL with default tolerance.

Classes
class	gmx::test::CommandLine
	Helper class for tests that need to construct command lines. More...

class	gmx::test::CommandLineTestHelper
	Helper class for tests that construct command lines that need to reference existing files. More...

class	gmx::test::CommandLineTestBase
	Test fixture for tests that call a single command-line program with input/output files. More...

class	gmx::test::ConfMatch
	Match the contents as an gro file. More...

class	gmx::test::IFileMatcher
	Represents a file matcher, matching file contents against reference (or other) data. More...

class	gmx::test::IFileMatcherSettings
	Represents a factory for creating a file matcher. More...

class	gmx::test::TextFileMatch
	Use a ITextBlockMatcher for matching the contents. More...

class	gmx::test::NoContentsMatch
	Do not check the contents of the file. More...

class	gmx::test::InteractiveTestHelper
	Helper class for testing interactive sessions. More...

class	gmx::test::LoggerTestHelper
	Helper class for tests to check output written to a logger. More...

class	gmx::test::TestReferenceData
	Handles creation of and comparison to test reference data. More...

class	gmx::test::TestReferenceChecker
	Handles comparison to test reference data. More...

class	gmx::test::StdioTestHelper
	Helper class for tests where code reads directly from `stdin`. More...

class	gmx::test::StringTestBase
	Test fixture for tests that check string formatting. More...

class	gmx::test::FloatingPointDifference
	Computes and represents a floating-point difference value. More...

class	gmx::test::FloatingPointTolerance
	Specifies a floating-point comparison tolerance and checks whether a difference is within the tolerance. More...

class	gmx::test::TestException
	Exception class for reporting errors in tests. More...

class	gmx::test::TestFileManager
	Helper for tests that need input and output files. More...

class	gmx::test::TestFileInputRedirector
	In-memory implementation for IFileInputRedirector for tests. More...

class	gmx::test::TestFileOutputRedirector
	In-memory implementation of IFileOutputRedirector for tests. More...

class	gmx::test::TestOptionsProvider
	Provides additional options for the test executable. More...

class	gmx::test::ITextBlockMatcher
	Represents a text matcher, matching text stream contents against reference data. More...

class	gmx::test::ITextBlockMatcherSettings
	Represents a factory for creating a text matcher. More...

class	gmx::test::ExactTextMatch
	Use an exact text match (the contents should be exactly equal). More...

class	gmx::test::NoTextMatch
	Do not match the text (the contents are ignored). More...

class	gmx::test::FilteringExactTextMatch
	Use an exact text match after scrubbing lines of the text that match the supplied regular expressions. More...

class	gmx::test::XvgMatch
	Match the contents as an xvg file. More...

Macros
#define	GMX_MPI_TEST(expectedRankCount) ASSERT_EQ(expectedRankCount, ::gmx::test::getNumberOfTestMpiRanks())
	Declares that this test is an MPI-enabled unit test. More...

#define	EXPECT_PLAIN(expr)
	Assert for predicates that return AssertionResult and produce a full failure message. More...

#define	ASSERT_PLAIN(expr)
	Assert for predicates that return AssertionResult and produce a full failure message. More...

#define	GMX_TEST_OPTIONS(name, options)
	Macro to add additional command-line options for the test binary. More...

Enumerations
enum	gmx::test::ReferenceDataMode { gmx::test::erefdataCompare, gmx::test::erefdataCreateMissing, gmx::test::erefdataUpdateChanged, gmx::test::erefdataUpdateAll }
	Mode of operation for reference data handling. More...

Functions
int	gmx::test::getNumberOfTestMpiRanks ()
	Returns the number of MPI ranks to use for an MPI test. More...

void	gmx::test::initReferenceData (IOptionsContainer *options)
	Initializes reference data handling. More...

void	gmx::test::registerTestOptions (const char name, TestOptionsProvider provider)
	Registers a test option provider with the test framework. More...

void	gmx::test::initTestOptions (IOptionsContainer *options)
	Initializes the options from all registered test providers. More...

static FloatingPointTolerance	ulpTolerance (uint64_t ulpDiff)
	Creates a tolerance that only allows a specified ULP difference. More...

FloatingPointTolerance	relativeToleranceAsFloatingPoint (double magnitude, double tolerance)
	Creates a tolerance that allows a difference in two compared values that is relative to the given magnitude. More...

FloatingPointTolerance	relativeToleranceAsPrecisionDependentFloatingPoint (double magnitude, float singleTolerance, double doubleTolerance)
	Creates a tolerance that allows a precision-dependent difference in two compared values that is relative to the given magnitude. More...

static FloatingPointTolerance	relativeToleranceAsPrecisionDependentUlp (double magnitude, uint64_t singleUlpDiff, uint64_t doubleUlpDiff)
	Creates a tolerance that allows a precision-dependent relative difference in a complex computation. More...

static FloatingPointTolerance	absoluteTolerance (double tolerance)
	Creates a tolerance that allows a specified absolute difference.

static FloatingPointTolerance	relativeToleranceAsUlp (double magnitude, uint64_t ulpDiff)
	Creates a tolerance that allows a relative difference in a complex computation. More...

static FloatingPointTolerance	defaultRealTolerance ()
	Returns the default tolerance for comparing `real` numbers.

static FloatingPointTolerance	defaultFloatTolerance ()
	Returns the default tolerance for comparing single-precision numbers when compared by GROMACS built in either precision mode. More...

Directories
directory	testutils
	Testing Utilities (testutils)

directory	tests
	Unit tests for Testing Utilities (testutils).

Files
file	cmdlinetest.h
	Declares utilities testing command-line programs.

file	conftest.h
	Declares function to add the content of a conf file to a checker.

file	filematchers.h
	Declares utility classes for testing file contents.

file	interactivetest.h
	Provides helper classes for testing interactive prompts.

file	loggertest.h
	Declares gmx::test::LoggerTestHelper.

file	mpitest.h
	Helper functions for MPI tests to make thread-MPI look like real MPI.

file	refdata.h
	Functionality for writing tests that can produce their own reference data.

file	setenv.h
	Helper functions to have identical behavior of setenv and unsetenv on Unix and Windows systems.

file	simulationdatabase.h
	Functionality for testing whether calls to mdrun produce the same energy and force quantities when they should do so.

file	stdiohelper.h
	Declares gmx::test::StdioTestHelper.

file	stringtest.h
	Declares gmx::test::StringTestBase.

file	testasserts.h
	Extra assertions for unit tests.

file	testexceptions.h
	Exception classes for errors in tests.

file	testfilemanager.h
	Declares gmx::test::TestFileManager.

file	testfileredirector.h
	Declares generic mock implementations for interfaces in fileredirector.h.

file	testmatchers.h
	Extra GoogleMock matchers for unit tests.

file	testoptions.h
	Functions for accessing test command-line options.

file	textblockmatchers.h
	Declares utility classes for testing multi-line strings against reference data.

file	tprfilegenerator.h
	Helper for generating reusuable TPR files for tests within the same test binary.

file	xvgtest.h
	Declares function to add the content of an xvg file to a checker.

Macro Definition Documentation

#define ASSERT_PLAIN ( expr )

Assert for predicates that return AssertionResult and produce a full failure message.

expr should evaluate to AssertionResult, and on failure the message from the result is used as-is, unlike in ASSERT_TRUE().

#define EXPECT_PLAIN ( expr )

Assert for predicates that return AssertionResult and produce a full failure message.

expr should evaluate to AssertionResult, and on failure the message from the result is used as-is, unlike in EXPECT_TRUE().

#define GMX_MPI_TEST ( expectedRankCount ) ASSERT_EQ(expectedRankCount, ::gmx::test::getNumberOfTestMpiRanks())

Declares that this test is an MPI-enabled unit test.

Parameters

[in] expectedRankCount Expected number of ranks for this test. The test will fail if run with unsupported number of ranks.

To write unit tests that run under MPI, you need to do a few things:

Put GMX_MPI_TEST() as the first statement in your test body and specify the number of ranks this test expects.
Declare your unit test in CMake with gmx_add_mpi_unit_test(). Note that all tests in the binary should fulfill the conditions above, and work with the same number of ranks. TODO: Figure out a mechanism for mixing tests with different rank counts in the same binary (possibly, also MPI and non-MPI tests).

When you do the above, the following will happen:

The test will get compiled only if thread-MPI or real MPI is enabled.
The test will get executed on the number of ranks specified. If you are using real MPI, the whole test binary is run under MPI and test execution across the processes is synchronized (GMX_MPI_TEST() actually has no effect in this case, the synchronization is handled at a higher level). If you are using thread-MPI, GMX_MPI_TEST() is required and it initializes thread-MPI with the specified number of threads and runs the rest of the test on each of the threads.

You need to be extra careful for variables in the test fixture, if you use one: when run under thread-MPI, these will be shared across all the ranks, while under real MPI, these are naturally different for each process. Local variables in the test body are private to each rank in both cases.

Currently, it is not possible to specify the number of ranks as one, because that will lead to problems with (at least) thread-MPI, but such tests can be written as serial tests anyways.

#define GMX_TEST_OPTIONS	(	name,
		options
	)

Macro to add additional command-line options for the test binary.

Parameters

name	Unique name for the set of options.
options	Placeholder name for an gmx::Options object for adding options.

The macro should be followed by a block that adds the desired command-line options to options using gmx::Options::addOption(). Extensible Handling of Options (options) provides an overview of the options machinery.

name must be unique within the executable to which the options are added. If the macro is within an unnamed namespace, then it is sufficient that it is unique within the file.

Typical usage:

#include "gromacs/options/basicoptions.h"
#include "gromacs/options/ioptionscontainer.h"
#include "testutils/testoptions.h"
namespace gmx
{
namespace
{
bool g_optionValue = false;
//! \cond
GMX_TEST_OPTIONS(MyTestOptions, options)
{
    options->addOption(BooleanOption("flag").store(&g_optionValue)
                           .description("My description"));
}
//! \endcond
} // namespace
} // namespace gmx

\cond and \endcond statements are necessary around the macro to avoid Doxygen warnings.

One macro invocation per an added option, with more of the implementation details hidden inside the macro, could be nicer. But that requires more elaborate macro machinery, so it is probably not worth the effort and complexity.

Enumeration Type Documentation

enum gmx::test::ReferenceDataMode

Mode of operation for reference data handling.

There should be no need to use this type outside the test utility module.

Enumerator
erefdataCompare	Compare to existing reference data. If reference data does not exist, or if the test results differ from those in the reference data, the test fails.
erefdataCreateMissing	Create missing reference data. If reference data does not exist for a test, that test behaves as if erefdataUpdateAll had been specified. Tests for which reference data exists, behave like with erefdataCompare.
erefdataUpdateChanged	Update reference data that does not pass comparison. Tests utilizing reference data should always pass in this mode unless there is an I/O error.
erefdataUpdateAll	Update reference data, overwriting old data. Tests utilizing reference data should always pass in this mode unless there is an I/O error.

Function Documentation

static FloatingPointTolerance defaultFloatTolerance ( )

This permits a checker compiled with any GROMACS precision to compare equal or not in the same way.

int gmx::test::getNumberOfTestMpiRanks ( )

Returns the number of MPI ranks to use for an MPI test.

For thread-MPI builds, this will return the requested number of ranks even before the thread-MPI threads have been started.

void gmx::test::initReferenceData ( IOptionsContainer * options )

Initializes reference data handling.

Adds command-line options to options to set the reference data mode. By default, erefdataCompare is used, but --ref-data create or --ref-data update can be used to change it.

This function is automatically called by initTestUtils().

void gmx::test::initTestOptions ( IOptionsContainer * options )

Initializes the options from all registered test providers.

Parameters

options The options are added here.

This is called automatically by initTestUtils().

void gmx::test::registerTestOptions	(	const char *	name,
		TestOptionsProvider *	provider
	)

Registers a test option provider with the test framework.

Parameters

[in]	name	Name of the options provider (for ordering).
[in]	provider	The provider to register.

Exceptions

std::bad_alloc	if out of memory.
tMPI::system_error	on mutex failures.

Typically not used directly in test code, but through the GMX_TEST_OPTIONS macro.

This gets called from constructors for global variables, so ideally it would not throw to avoid unhandled exceptions. But since this is only test code, it is not worth the effort to try to remove those rare exceptions (mutex failures and out-of-memory from STL).

FloatingPointTolerance relativeToleranceAsFloatingPoint	(	double	magnitude,
		double	tolerance
	)

Parameters

[in]	magnitude	Magnitude of the numbers the computation operates in.
[in]	tolerance	Relative tolerance permitted (e.g. 1e-4).

In addition to setting an relative tolerance for both precisions, this sets the absolute tolerance such that values close to zero (in general, smaller than magnitude) do not fail the check if they differ by less than tolerance evaluated at magnitude. This accounts for potential loss of precision for small values, and should be used when accuracy of values much less than magnitude do not matter for correctness.

FloatingPointTolerance relativeToleranceAsPrecisionDependentFloatingPoint	(	double	magnitude,
		float	singleTolerance,
		double	doubleTolerance
	)

Parameters

[in]	magnitude	Magnitude of the numbers the computation operates in.
[in]	singleTolerance	Relative tolerance permitted (e.g. 1e-4) in single precision.
[in]	doubleTolerance	Relative tolerance permitted (e.g. 1e-4) in double precision.

In addition to setting an relative tolerance for both precisions, this sets the absolute tolerance such that values close to zero (in general, smaller than magnitude) do not fail the check if they differ by less than tolerance evaluated at magnitude. This accounts for potential loss of precision for small values, and should be used when accuracy of values much less than magnitude do not matter for correctness.

static FloatingPointTolerance relativeToleranceAsPrecisionDependentUlp	(	double	magnitude,
		uint64_t	singleUlpDiff,
		uint64_t	doubleUlpDiff
	)

Parameters

[in]	magnitude	Magnitude of the numbers the computation operates in.
[in]	singleUlpDiff	Expected accuracy of single-precision computation (in ULPs).
[in]	doubleUlpDiff	Expected accuracy of double-precision computation (in ULPs).

This works as relativeToleranceAsUlp(), but allows setting the ULP difference separately for the different precisions. This supports cases where the double-precision calculation can acceptably has a higher ULP difference, but relaxing the single-precision tolerance would lead to an unnecessarily loose test.

static FloatingPointTolerance relativeToleranceAsUlp	(	double	magnitude,
		uint64_t	ulpDiff
	)

Parameters

[in]	magnitude	Magnitude of the numbers the computation operates in.
[in]	ulpDiff	Expected accuracy of the computation (in ULPs).

In addition to setting the ULP tolerance as ulpTolerance(), this sets the absolute tolerance such that values close to zero (in general, smaller than magnitude) do not fail the check if they differ by less than ulpDiff evaluated at magnitude. This accounts for potential loss of precision for small values, and should be used when accuracy of values much less than magnitude do not matter for correctness.

static FloatingPointTolerance ulpTolerance ( uint64_t ulpDiff )

The tolerance uses the given ULP value for both precisions, i.e., double precision will have much stricter tolerance.

Description

Assertions for exceptions

Assertions for floating-point comparison

Classes

Macros

Enumerations

Functions

Directories

Files

Macro Definition Documentation

Enumeration Type Documentation

Function Documentation