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2020.7
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A
DensitySimilarityInnerProduct
(
gmx::anonymous_namespace{densityfit.cpp}
)
IKeyValueTreeTransformRules
(
gmx
)
no_delete
(
gmx
)
Simd4Double
(
gmx
)
DensitySimilarityMeasure
(
gmx
)
ILastStepSignallerClient
(
gmx
)
registerMdModuleNotification<>::NoCallParameter
(
gmx
)
Simd4FBool
(
gmx
)
AbstractAnalysisArrayData
(
gmx
)
DensitySimilarityRelativeEntropy
(
gmx::anonymous_namespace{densityfit.cpp}
)
ilist_data_t
NoContentsMatch
(
gmx::test
)
Simd4Float
(
gmx
)
AbstractAnalysisData
(
gmx
)
DevelopmentFeatureFlags
(
gmx
)
iListInput
(
gmx::anonymous_namespace{bonded.cpp}
)
nonbonded_verlet_t
Simd4Test
(
gmx::test
)
AbstractAverageHistogram
(
gmx
)
HardwareTopology::Device
(
gmx
)
ILoggingSignallerClient
(
gmx
)
NonbondedBenchmarkInfo
(
gmx
)
SimdArrayRef
(
gmx::internal
)
AbstractCompositeHelpTopic
(
gmx
)
df_history_t
ILogTarget
(
gmx
)
NoOptionalOutput
(
gmx::test
)
SimdBaseTest
(
gmx::test
)
AbstractOption
(
gmx
)
DifferentTasksTest
(
gmx::test::anonymous_namespace{mutex.cpp}
)
IMDEnergyBlock
(
gmx
)
NormalDistribution
(
gmx
)
SimdDBool
(
gmx
)
AbstractOptionSection
(
gmx
)
DimParams
(
gmx
)
IMDHeader
(
gmx
)
NormalModesTest
(
gmx::test::anonymous_namespace{normalmodes.cpp}
)
SimdDIBool
(
gmx
)
AbstractOptionSectionHandle
(
gmx
)
DirectoryEnumerator
(
gmx
)
IMDModule
(
gmx
)
not_null
(
gmx::compat
)
SimdDInt32
(
gmx
)
AbstractOptionStorage
(
gmx
)
AtomDistribution::DomainAtomGroups
ImdOptions
(
gmx
)
NoTextMatch
(
gmx::test
)
SimdDInt32Tag
(
gmx
)
AbstractPlotModule
(
gmx
)
DomainDecompositionBuilder
(
gmx
)
IMDOutputProvider
(
gmx
)
NotImplementedError
(
gmx
)
SimdDouble
(
gmx
)
AbstractSimpleHelpTopic
(
gmx
)
DomainDecompositionSpecialCasesTest
(
anonymous_namespace{domain_decomposition.cpp}
)
IMdpOptionProvider
(
gmx
)
HardwareTopology::Numa
(
gmx
)
SimdDoubleTag
(
gmx
)
AbstractTrajectoryAnalysisModuleTestFixture
(
gmx::test
)
DomainLifetimeWorkload
(
gmx
)
IMDSocket
(
gmx
)
HardwareTopology::NumaNode
(
gmx
)
SimdFBool
(
gmx
)
accessor_basic
(
gmx
)
GridSet::DomainSetup
(Nbnxm)
IMessageWriter
(
gmx::anonymous_namespace{exceptions.cpp}
)
NumericalSplineTableInput
(
gmx
)
SimdFIBool
(
gmx
)
KeyValueTreeTransformRuleBuilder::AfterFrom
(
gmx
)
DomDecHelper
(
gmx
)
Update::Impl
NumPmeDomains
SimdFInt32
(
gmx
)
AlignedAllocationPolicy
(
gmx
)
DomdecOptions
(
gmx
)
ResidueType::Impl
O
SimdFInt32Tag
(
gmx
)
AlignedArray< double, N >
(
gmx
)
DoubleOption
(
gmx
)
UpdateConstrainCuda::Impl
(
gmx
)
SimdFloat
(
gmx
)
AlignedArray< float, N >
(
gmx
)
DoubleOptionInfo
(
gmx
)
TrajectoryAnalysisSettings::Impl
(
gmx
)
ObservablesHistory
SimdFloatingpointUtilTest
(
gmx::test::anonymous_namespace{simd_floatingpoint_util.cpp}
)
Allocator
(
gmx
)
DoubleOptionStorage
(
gmx
)
TrajectoryAnalysisModuleData::Impl
(
gmx
)
ObsoleteToolModule
(
anonymous_namespace{legacymodules.cpp}
)
SimdFloatTag
(
gmx
)
AllocatorTest
(
gmx::test
)
E
TrajectoryAnalysisModule::Impl
(
gmx
)
ocl_gpu_id_t
SimdSetZeroProxy
(
gmx
)
AllVsiteBondedInteractions
TextTableFormatter::Impl
(
gmx
)
omp_module_nthreads_t
SimdTest
(
gmx::test
)
AnalysisArrayData
(
gmx
)
ekinstate_t
TextReader::Impl
(
gmx
)
OpenClTraits
(
gmx
)
SimdTraits
(
gmx::internal
)
AnalysisData
(
gmx
)
ElectricField
(
gmx::anonymous_namespace{electricfield.cpp}
)
TestReferenceChecker::Impl
(
gmx::test
)
OpenClTraits< cl_command_queue >
(
gmx
)
SimpleHelpTopic
(
gmx
)
AnalysisDataAverageModule
(
gmx
)
ElectricFieldDimension
(
gmx::anonymous_namespace{electricfield.cpp}
)
TestFileManager::Impl
(
gmx::test
)
OpenClTraits< cl_context >
(
gmx
)
SimpleMdrunTest
(
gmx::test::anonymous_namespace{simple_mdrun.cpp}
)
AnalysisDataBinAverageModule
(
gmx
)
em_state_t
MockAnalysisDataModule::Impl
(
gmx::test
)
OpenClTraits< cl_kernel >
(
gmx
)
SimulationContext
(
gmx
)
AnalysisDataDisplacementModule
(
gmx
)
EnergyCalculationFrequencyErrors
(
gmx
)
SelectionParserSymbolTable::Impl
(
gmx
)
OpenClTraits< cl_program >
(
gmx
)
SimulationGroups
AnalysisDataFrameAverageModule
(
gmx
)
EnergyComparison
(
gmx::test
)
SelectionParserSymbolIterator::Impl
(
gmx
)
OpenClTraitsBase
(
gmx
)
SimulationInstabilityError
(
gmx
)
AnalysisDataFrameAverager
(
gmx
)
EnergyElement
(
gmx
)
SelectionParserSymbol::Impl
(
gmx
)
OptionInfo
(
gmx
)
SimulationRunner
(
gmx::test
)
AnalysisDataFrameHeader
(
gmx
)
EnergyEvaluator
(
anonymous_namespace{minimize.cpp}
)
SelectionOptionManager::Impl
(
gmx
)
OptionManagerContainer
(
gmx
)
SimulationSignal
(
gmx
)
AnalysisDataFrameLocalData
(
gmx
)
EnergyFrame
(
gmx
)
SelectionCollection::Impl
(
gmx
)
Options
(
gmx
)
SimulationSignaller
(
gmx
)
AnalysisDataFrameLocalDataHandle
(
gmx
)
EnergyFrameReader
(
gmx::test
)
RestraintManager::Impl
(
gmx
)
OptionsAdapter
(
gmx::anonymous_namespace{pargs.cpp}
)
SimulationWorkload
(
gmx
)
AnalysisDataFrameLocalDataSetHandle
(
gmx
)
EnergyMinimizationTest
(
gmx::test::anonymous_namespace{minimize.cpp}
)
PositionCalculationCollection::Impl
(
gmx
)
OptionsAssigner
(
gmx
)
SimulatorBuilder
(
gmx
)
AnalysisDataFrameRef
(
gmx
)
EnergyOutputTest
(
gmx::test::anonymous_namespace{energyoutput.cpp}
)
PmePpCommGpu::Impl
(
gmx
)
OptionsBehaviorCollection
(
gmx
)
SingleRankChecker
(
anonymous_namespace{resourcedivision.cpp}
)
AnalysisDataHandle
(
gmx
)
EnergyOutputTestParameters
(
gmx::test::anonymous_namespace{energyoutput.cpp}
)
PmeForceSenderGpu::Impl
(
gmx
)
OptionSection
(
gmx
)
Site
(
gmx
)
AnalysisDataHandleImpl
(
gmx::internal
)
EnergySignaller
(
gmx
)
PmeCoordinateReceiverGpu::Impl
(
gmx
)
OptionSectionHandle
(
gmx
)
HardwareTopology::Socket
(
gmx
)
AnalysisDataLifetimeModule
(
gmx
)
gmx_ga2la_t::Entry
OptionsAssigner::Impl
(
gmx
)
OptionSectionImpl
(
gmx::internal
)
SoftCoreReal
AnalysisDataModuleManager
(
gmx
)
EnumerationArray
(
gmx
)
MrcDensityMapOfFloatWriter::Impl
(
gmx
)
OptionsFilter
(
gmx::anonymous_namespace{cmdlinehelpwriter.cpp}
)
SoftCoreReal< SoftCoreTreatment::RPower48 >
AnalysisDataModuleParallel
(
gmx
)
EnumerationIterator
(
gmx
)
MrcDensityMapOfFloatReader::Impl
(
gmx
)
OptionsImpl
(
gmx::internal
)
sort_along_vec_t
AnalysisDataModuleSerial
(
gmx
)
EnumerationWrapper
(
gmx
)
LocalAtomSetManager::Impl
(
gmx
)
OptionsIterator
(
gmx
)
SplineTableTest
(
gmx::test::anonymous_namespace{splinetable.cpp}
)
AnalysisDataParallelOptions
(
gmx
)
EnumIndexStore
(
gmx::internal
)
ImdSession::Impl
(
gmx
)
OptionsListFormatter
(
gmx::anonymous_namespace{cmdlinehelpwriter.cpp}
)
StandardInputStream
(
gmx
)
AnalysisDataPlotModule
(
gmx
)
EnumOption
(
gmx
)
HelpWriterContext::Impl
(
gmx
)
OptionsModifyingIterator
(
gmx
)
StartingBehaviorHandler
(
gmx::anonymous_namespace{handlerestart.cpp}
)
AnalysisDataPlotSettings
(
gmx
)
EnumOptionInfo
(
gmx
)
HelpManager::Impl
(
gmx
)
OptionsModifyingTypeVisitor
(
gmx
)
StatePropagatorData
(
gmx
)
AnalysisDataPointSetRef
(
gmx
)
EnumOptionStorage
(
gmx
)
HelpLinks::Impl
(
gmx
)
OptionsModifyingVisitor
(
gmx
)
StaticAverageHistogram
(
gmx::anonymous_namespace{histogram.cpp}
)
AnalysisDataProxy
(
gmx
)
ErrorMessage
(
gmx::anonymous_namespace{exceptions.cpp}
)
GpuBonded::Impl
(
gmx
)
OptionStorageTemplate
(
gmx
)
StaticDataFrameHeaderChecker
(
gmx::test::anonymous_namespace{mock_datamodule.cpp}
)
AnalysisDataSimpleHistogramModule
(
gmx
)
EwaldBoxZScaler
GaussTransform3D::Impl
(
gmx
)
OptionStorageTemplateSimple
(
gmx
)
StaticDataPointsChecker
(
gmx::test::anonymous_namespace{mock_datamodule.cpp}
)
AnalysisDataStorage
(
gmx
)
ExactTextMatch
(
gmx::test
)
FileNameOptionManager::Impl
(
gmx
)
OptionsTypeVisitor
(
gmx
)
StaticDataPointsStorageChecker
(
gmx::test::anonymous_namespace{mock_datamodule.cpp}
)
AnalysisDataStorageFrame
(
gmx
)
ExceptionInfo
(
gmx
)
DomainDecompositionBuilder::Impl
(
gmx
)
OptionsVisitor
(
gmx
)
StaticLog2
(
gmx
)
AnalysisDataStorageFrameData
(
gmx::internal
)
ExceptionInitializer
(
gmx
)
DensityFittingForce::Impl
(
gmx
)
OptionTemplate
(
gmx
)
StaticLog2< 0 >
(
gmx
)
AnalysisDataStorageImpl
(
gmx::internal
)
ExclusionBlock
(
gmx
)
CommandLineParser::Impl
(
gmx
)
OptionValueConverterSimple
(
gmx
)
StaticLog2< 1 >
(
gmx
)
AnalysisDataTestFixture
(
gmx::test
)
ExponentialDistribution
(
gmx
)
CommandLineModuleManager::Impl
(
gmx
)
OptionValueStoreNull
(
gmx
)
StdioTestHelper
(
gmx::test
)
AnalysisDataTestInput
(
gmx::test
)
ExponentialMovingAverage
(
gmx
)
CommandLineHelpWriter::Impl
(
gmx
)
OuterProductEvaluator
(
gmx
)
StepWorkload
(
gmx
)
AnalysisDataTestInputFrame
(
gmx::test
)
ExponentialMovingAverageState
(
gmx
)
CommandLineHelpContext::Impl
(
gmx
)
OutputAdapterContainer
(
gmx
)
StopConditionSignal
(
gmx
)
AnalysisDataTestInputPointSet
(
gmx::test
)
extents
(
gmx
)
AnalysisDataWeightedHistogramModule::Impl
(
gmx
)
OutputFile
StopConditionTime
(
gmx
)
AnalysisDataValue
(
gmx
)
extents_analyse< 0 >
(gmx::detail)
AnalysisDataSimpleHistogramModule::Impl
(
gmx
)
OutputQuantities
(
gmx::anonymous_namespace{bonded.cpp}
)
StopHandler
(
gmx
)
AnalysisDataVectorPlotModule
(
gmx
)
extents_analyse< R, dynamic_extent, StaticExtents...>
(gmx::detail)
AnalysisDataModuleManager::Impl
(
gmx
)
OutputRequirementOptionDirector
(
gmx
)
StopHandlerBuilder
(
gmx
)
AnalysisDataWeightedHistogramModule
(
gmx
)
extents_analyse< R, E0, StaticExtents...>
(gmx::detail)
AnalysisDataLifetimeModule::Impl
(
gmx
)
OutputRequirements
(
gmx
)
StringCompare
(
gmx
)
AnalysisHistogramSettings
(
gmx
)
ExtractClusterModuleTest
(
gmx::test::anonymous_namespace{extract_cluster.cpp}
)
AnalysisDataDisplacementModule::Impl
(
gmx
)
OutputSelector
(
gmx
)
StringFormatter
(
gmx
)
AnalysisHistogramSettingsInitializer
(
gmx
)
F
AnalysisData::Impl
(
gmx
)
OutputSelectorDeathTest
(
gmx::test
)
StringInputStream
(
gmx
)
AnalysisNeighborhood
(
gmx
)
AbstractCompositeHelpTopic::Impl
(
gmx
)
P
StringKeywordMatchItem
(
anonymous_namespace{sm_keywords.cpp}
)
AnalysisNeighborhoodPair
(
gmx
)
f_thread_t
AbstractAnalysisData::Impl
(
gmx
)
StringOption
(
gmx
)
AnalysisNeighborhoodPairSearch
(
gmx
)
FileIOError
(
gmx
)
AtomProperties::Impl
PaddedVector
(
gmx
)
StringOptionInfo
(
gmx
)
AnalysisNeighborhoodPositions
(
gmx
)
FileIOXdrSerializer
(
gmx
)
InconsistentInputError
(
gmx
)
PaddedVectorTest
(
gmx::test
)
StringOptionStorage
(
gmx
)
AnalysisNeighborhoodSearch
(
gmx
)
FileNameOption
(
gmx
)
IndexBlockTest
(
anonymous_namespace{indexutil.cpp}
)
PaddingTraits
(gmx::detail)
StringOutputStream
(
gmx
)
AnalysisTemplate
FileNameOptionInfo
(
gmx
)
IndexFileWriterModule
(
gmx::analysismodules::anonymous_namespace{select.cpp}
)
PageAlignedAllocationPolicy
(
gmx
)
StringTestBase
(
gmx::test
)
AnalyticalSplineTableInput
(
gmx
)
FileNameOptionManager
(
gmx
)
IndexGroupsAndNames
(
gmx
)
PairDistance
(
gmx::analysismodules::anonymous_namespace{pairdist.cpp}
)
SurfaceAreaCalculator
(
gmx
)
AnglePositionIterator
(
gmx::analysismodules::anonymous_namespace{angle.cpp}
)
FileNameOptionStorage
(
gmx
)
INeighborSearchSignallerClient
(
gmx
)
PairDistanceModuleData
(
gmx::analysismodules::anonymous_namespace{pairdist.cpp}
)
swap_compartment
Any
(
gmx
)
FileTypeHandler
(
gmx::anonymous_namespace{filenameoption.cpp}
)
InitialConstraintsTest
(
gmx::test::anonymous_namespace{initialconstraints.cpp}
)
PairlistParams
swap_group
AnyOutputSupportedFiles
(
gmx::test
)
FileTypeMapping
(
gmx::anonymous_namespace{filenameoption.cpp}
)
InstallationPrefixInfo
(
gmx
)
PairlistSet
SwapCoordinates
(
gmx
)
ApicIdLayout
(
gmx::anonymous_namespace{cpuinfo.cpp}
)
FilteringExactTextMatch
(
gmx::test
)
Int64Option
(
gmx
)
ParallelConsistencyError
(
gmx
)
SynopsisFormatter
(
gmx::anonymous_namespace{cmdlinehelpwriter.cpp}
)
APIError
(
gmx
)
FixedCapacityVector
(
gmx
)
Int64OptionInfo
(
gmx
)
UniformRealDistribution::param_type
(
gmx
)
T
ArrayRef
(
gmx
)
FlagsTemplate
(
gmx
)
Int64OptionStorage
(
gmx
)
UniformIntDistribution::param_type
(
gmx
)
ArrayRefWithPadding
(
gmx
)
FlagTest
(
gmx::test
)
IntegerBox
(
gmx
)
TabulatedNormalDistribution::param_type
(
gmx
)
t_bb
Atom2VsiteBond
FloatingPointDifference
(
gmx::test
)
IntegerOption
(
gmx
)
NormalDistribution::param_type
(
gmx
)
t_compare_value
AtomAndPmeOrderSizedData
(
gmx::test::anonymous_namespace{pmegathertest.cpp}
)
FloatingPointTolerance
(
gmx::test
)
IntegerOptionInfo
(
gmx
)
GammaDistribution::param_type
(
gmx
)
t_compiler_data
AtomDistribution
FloatOption
(
gmx
)
IntegerOptionStorage
(
gmx
)
ExponentialDistribution::param_type
(
gmx
)
t_conect
(
gmx::analysismodules::anonymous_namespace{sasa.cpp}
)
AtomIndex
FloatOptionInfo
(
gmx
)
gpu_timers_t::Interaction
(Nbnxm)
ParameterizedMdrunTestFixture
(
gmx::test
)
t_coordselection
AtomIndexExtremes
(
gmx
)
FloatOptionStorage
(
gmx
)
InteractionListHandle
ParrinelloRahmanBarostat
(
gmx
)
t_edflood
(
anonymous_namespace{edsam.cpp}
)
AtomIterator
FloatTypeMatcher
(
gmx::test
)
InteractionOfType
PartialDeserializedTprFile
t_edvecs
(
anonymous_namespace{edsam.cpp}
)
AtomPair
(
gmx
)
ForceElement
(
gmx
)
InteractionsOfType
PbcAiuc
t_eigvec
(
anonymous_namespace{edsam.cpp}
)
AtomProperties
ForceOutputs
(
gmx
)
InteractiveMolecularDynamics
(
gmx
)
PeriodicActionsTest
(
gmx::test::anonymous_namespace{periodicactions.cpp}
)
t_filenm
AtomProperty
ForceProviderInput
(
gmx
)
InteractiveTestHelper
(
gmx::test
)
PhysicalNodeCommunicator
(
gmx
)
t_mapping
AtomProxy
ForceProviderOutput
(
gmx
)
InterdependentTask
pme_setup_t
t_matrix
AtomRange
ForceProviders
(
gmx
)
InternalError
(
gmx
)
PmeBSplineModuliTest
(
gmx::test::anonymous_namespace{pmebsplinetest.cpp}
)
t_mdatoms
AtomSizedData
(
gmx::test::anonymous_namespace{pmegathertest.cpp}
)
ForceWithShiftForces
(
gmx
)
InvalidInputError
(
gmx
)
PmeForceSenderGpu
(
gmx
)
t_methoddata_compare
Awh
(
gmx
)
ForceWithVirial
(
gmx
)
IOptionManager
(
gmx
)
PmeGatherTest
(
gmx::test::anonymous_namespace{pmegathertest.cpp}
)
t_methoddata_distance
AwhEnergyBlock
(
gmx
)
FramePairManager
(
gmx::test
)
IOptionsBehavior
(
gmx
)
PmeGpu
t_methoddata_insolidangle
AwhReader
FreeEnergyPerturbationElement
(
gmx
)
IOptionsContainer
(
gmx
)
PmeGpuAtomParams
t_methoddata_kweval
AwhTestParameters
(
gmx::test
)
FreeVolume
(
gmx::analysismodules::anonymous_namespace{freevolume.cpp}
)
IOptionsContainerWithSections
(
gmx
)
PmeGpuConstParams
t_methoddata_kwint
B
functor_wrapper
(
gmx
)
IOptionSectionStorage
(
gmx
)
PmeGpuDynamicParams
t_methoddata_kwreal
G
IOptionsFormatter
(
gmx::anonymous_namespace{cmdlinehelpwriter.cpp}
)
PmeGpuGridParams
t_methoddata_kwstr
(
anonymous_namespace{sm_keywords.cpp}
)
BalanceRegion
IOptionValueStore
(
gmx
)
PmeGpuKernelParamsBase
t_methoddata_merge
KeyValueTreeTransformRuleBuilder::Base
(
gmx
)
GammaDistribution
(
gmx
)
IOutputAdapter
(
gmx
)
PmeGpuProgramImpl
t_methoddata_permute
BaseEntry
GaussianOn1DLattice
(
gmx
)
IProgramContext
(
gmx
)
PmeGpuSettings
t_methoddata_pos
basic_mdspan
(
gmx
)
GaussianSpreadKernelParameters
(
gmx
)
IRestraintPotential
(
gmx
)
PmeGpuSpecific
t_methoddata_same
BasicAverageHistogramModule
(
gmx::internal
)
GaussTransform3D
(
gmx
)
ISerializer
(
gmx
)
PmeGpuStaging
t_nbparam
BasicHistogramImpl
(
gmx::internal
)
Grid::Geometry
(Nbnxm)
ISignaller
(
gmx
)
PmeLoadBalanceHelper
(
gmx
)
t_pargs
BasicVector
(
gmx
)
GlobalCommandLineHelpContext
(
gmx
)
ISimulator
(
gmx
)
PmePpCommGpu
(
gmx
)
t_partition
BenchmarkSystem
(
gmx
)
gmx_ana_index_t
ISimulatorElement
(
gmx
)
PmeShared
t_partition_item
Bias
(
gmx
)
gmx_ana_indexgrps_t
isIntegralConstant
(
gmx
)
PmeSolveTest
(
gmx::test::anonymous_namespace{pmesolvetest.cpp}
)
t_pbc
BiasCoupledToSystem
(
gmx
)
gmx_ana_indexmap_t
Range::iterator
(
gmx
)
PmeSplineAndSpreadTest
(
gmx::test::anonymous_namespace{pmesplinespreadtest.cpp}
)
t_pullcoord
BiasOutputSetup
gmx_ana_pos_t
ITextBlockMatcher
(
gmx::test
)
PmeTest
(
gmx::test::anonymous_namespace{pmetest.cpp}
)
t_register_method
BiasParams
(
gmx
)
gmx_ana_poscalc_t
ITextBlockMatcherSettings
(
gmx::test
)
PmeTestEnvironment
(
gmx::test
)
t_spheresurfacebin
BiasState
(
gmx
)
gmx_ana_selcollection_t
ITopologyHolderClient
(
gmx
)
PointState
(
gmx
)
t_state
BiasStateTest
(
gmx::test
)
gmx_ana_selmethod_help_t
ITopologyProvider
(
gmx
)
GaussianSpreadKernelParameters::PositionAndAmplitude
(
gmx
)
t_swap
BiasTest
(
gmx::test
)
gmx_ana_selmethod_t
ITrajectorySignallerClient
(
gmx
)
PositionCalculationCollection
(
gmx
)
t_UmbrellaHeader
BiasWriter
(
gmx
)
gmx_ana_selparam_t
ITrajectoryWriterClient
(
gmx
)
PotentialPointData
(
gmx
)
t_UmbrellaOptions
BinaryInformationSettings
(
gmx
)
gmx_ana_selvalue_t
IWrapper
(
gmx::anonymous_namespace{helpwritercontext.cpp}
)
PpRanks
t_UmbrellaWindow
bonded_threading_t
gmx_device_info_t
K
PreprocessingAtomTypes
t_xpmelmt
BondedInteraction
gmx_device_runtime_data_t
PreprocessingBondAtomType
TabulatedNormalDistribution
(
gmx
)
BondedInteractionList
gmx_domdec_constraints_t
KernelBenchOptions
(Nbnxm)
PreprocessResidue
Task
(
gmx
)
BondedInteractionsTest
(
gmx::test
)
gmx_domdec_specat_comm_t
KernelLaunchConfig
PrivateImplPointer
(
gmx
)
TerminationHelper
(
gmx::test
)
BooleanOption
(
gmx
)
gmx_enfrot
KeyValueTreeBuilder
(
gmx
)
Propagator
(
gmx
)
TestException
(
gmx::test
)
BooleanOptionInfo
(
gmx
)
gmx_enfrotgrp
KeyValueTreeObjectArrayBuilder
(
gmx
)
ProxyPtr
TestFileInputRedirector
(
gmx::test
)
BooleanOptionStorage
(
gmx
)
gmx_ffparams_t
KeyValueTreeObjectBuilder
(
gmx
)
pull_group_work_t
TestFileManager
(
gmx::test
)
BoundingBox
(Nbnxm)
gmx_fft_fftpack
KeyValueTreePath
(
gmx
)
Q
TestFileOutputRedirector
(
gmx::test
)
BoundingBox1D
(Nbnxm)
gmx_fft_fftw3
KeyValueTreeTransformRuleBuilder
(
gmx
)
TestHardwareContext
(
gmx::test
)
C
gmx_fft_mkl
KeyValueTreeTransformRulesScoped
(
gmx
)
QuadraticSplineTable
(
gmx
)
TestOptionsProvider
(
gmx::test
)
gmx_ga2la_t
KeyValueTreeUniformArrayBuilder
(
gmx
)
R
TestOptionsRegistry
(
gmx::test::anonymous_namespace{testoptions.cpp}
)
HardwareTopology::Cache
(
gmx
)
gmx_gpu_info_t
KeyValueTreeValueBuilder
(
gmx
)
TestProgramContext
(
gmx::test::anonymous_namespace{testinit.cpp}
)
CalculateAcceptanceWeightSimple
(
gmx::test::anonymous_namespace{expanded.cpp}
)
gmx_help_make_index_group
KeywordDetailsHelpTopic
(
gmx::anonymous_namespace{selhelp.cpp}
)
Range
(
gmx
)
TestReferenceChecker
(
gmx::test
)
ChainIdFiller
gmx_hw_opt_t
KeywordsHelpTopic
(
gmx::anonymous_namespace{selhelp.cpp}
)
RangeError
(
gmx
)
TestReferenceData
(
gmx::test
)
CheckpointHandler
(
gmx
)
gmx_kernel_timing_data_t
L
RangePartitioning
(
gmx
)
TestReferenceDataImpl
(gmx::test::internal)
CheckpointHeaderContents
gmx_localtop_t
Rdf
(
gmx::analysismodules::anonymous_namespace{rdf.cpp}
)
TextFileMatch
(
gmx::test
)
CheckpointHelper
(
gmx
)
gmx_molblock_t
LastStepSignaller
(
gmx
)
RdfModuleData
(
gmx::analysismodules::anonymous_namespace{rdf.cpp}
)
TextInputFile
(
gmx
)
CheckpointOptions
(
gmx
)
gmx_moltype_t
layout_right
(
gmx
)
ReferenceFileNames
(
gmx::test::anonymous_namespace{periodicactions.cpp}
)
TextInputStream
(
gmx
)
cl_atomdata
gmx_multisim_t
LeapFrogTest
(
gmx::test::anonymous_namespace{leapfrog.cpp}
)
registerMdModuleNotification
(
gmx
)
TextLineWrapper
(
gmx
)
cl_nb_staging
gmx_nbnxn_cuda_t
LeapFrogTestParameters
(
gmx::test::anonymous_namespace{leapfrog.cpp}
)
registerMdModuleNotification< CurrentCallParameter, CallParameter...>
(
gmx
)
TextLineWrapperSettings
(
gmx
)
cl_nbparam
gmx_nbnxn_ocl_t
LegacyMdrunOptions
(
gmx
)
registerMdModuleNotification<>
(
gmx
)
TextOutputFile
(
gmx
)
cl_nbparam_params
gmx_pme_comm_n_box_t
LegacySimulator
(
gmx
)
RepeatingOptionSection
(
gmx
)
TextOutputStream
(
gmx
)
ClfftInitializer
(
gmx
)
gmx_pme_comm_vir_ene_t
Lincs
(
gmx
)
RepeatingOptionSectionHandle
(
gmx
)
TextReader
(
gmx
)
ClHandle
(
gmx
)
gmx_pme_pp
LincsDeviations
(
gmx
)
RepeatingOptionSectionStorage
(
gmx
)
TextReaderTest
(
gmx::test::anonymous_namespace{textreader.cpp}
)
CMainCommandLineModule
(
gmx::anonymous_namespace{cmdlinemodulemanager.cpp}
)
gmx_potfit
LocalAtomSet
(
gmx
)
ReplicaExchangeParameters
TextReaderTestParams
(
gmx::test::anonymous_namespace{textreader.cpp}
)
TextTableFormatter::Impl::ColumnData
(
gmx
)
gmx_repl_ex
LocalAtomSetManager
(
gmx
)
SelectionOptionManager::Impl::RequestsClearer
(
gmx
)
TextTableFormatter
(
gmx
)
CommandLine
(
gmx::test
)
gmx_reverse_top_t
LogEntryWriter
(
gmx
)
ResetHandler
(
gmx
)
TextWriter
(
gmx
)
CommandLineCommonOptionsHolder
(
gmx
)
gmx_sel_evaluate_t
LoggerBuilder
(
gmx
)
ResidueTypeEntry
thread_work_t
CommandLineHelpContext
(
gmx
)
gmx_sel_lexer_t
LoggerOwner
(
gmx
)
RestraintForceProvider
(
gmx
)
ThreeFry2x64
(
gmx
)
CommandLineHelpModule
(
gmx
)
gmx_sel_mempool_block_t
LoggerTestHelper
(
gmx::test
)
RestraintManager
(
gmx
)
ThreeFry2x64Fast
(
gmx
)
CommandLineHelpWriter
(
gmx
)
gmx_sel_mempool_t
LoggingSignaller
(
gmx
)
RestraintMDModule
(
gmx
)
ThreeFry2x64General
(
gmx
)
CommandLineModuleGroup
(
gmx
)
gmx_slabdata
HardwareTopology::LogicalProcessor
(
gmx
)
RestraintMDModuleImpl
(
gmx
)
ThrowLocation
(
gmx
)
CommandLineModuleGroupData
(
gmx
)
gmx_sparsematrix
CpuInfo::LogicalProcessor
(
gmx
)
RootHelpTopic
(
gmx::anonymous_namespace{cmdlinehelpmodule.cpp}
)
TimeOptionScaler
(
gmx::anonymous_namespace{timeunitmanager.cpp}
)
CommandLineModuleManager
(
gmx
)
gmx_specatsend_t
LogLevelHelper
(
gmx
)
RstParagraphIterator
(
gmx
)
TimeUnitBehavior
(
gmx
)
CommandLineModuleManagerTestBase
(
gmx::test
)
gmx_tng_trajectory
LogWriteHelper
(
gmx
)
RVecMatcher
(
gmx::test
)
TimeUnitManager
(
gmx
)
CommandLineModuleSettings
(
gmx
)
gmx_wallclock_gpu_nbnxn_t
M
S
TimingOptions
(
gmx
)
CommandLineParser
(
gmx
)
gmx_wallclock_gpu_pme_t
ToleranceError
(
gmx
)
CommandLineProgramContext
(
gmx
)
gmx_walltime_accounting
HardwareTopology::Machine
(
gmx
)
Sasa
(
gmx::analysismodules::anonymous_namespace{sasa.cpp}
)
KeyValueTreeTransformRuleBuilder::ToObject
(
gmx
)
CommandLineTestBase
(
gmx::test
)
gpu_timers_t
(Nbnxm)
ManualOutputFile
(
gmx::test::anonymous_namespace{extract_cluster.cpp}
)
SasaModuleData
(
gmx::analysismodules::anonymous_namespace{sasa.cpp}
)
TopologyHolder
(
gmx
)
CommandLineTestHelper
(
gmx::test
)
GpuEventSynchronizer
MappedUnionFinder
(
gmx
)
SearchCycleCounting
TopologyInformation
(
gmx
)
CommandsHelpTopic
(
gmx::anonymous_namespace{cmdlinehelpmodule.cpp}
)
GpuHaloExchange
(
gmx
)
layout_right::mapping
(
gmx
)
Selection
(
gmx
)
TopologyManager
(
gmx::test
)
SimdMathTest::CompareSettings
(
gmx::test
)
GpuParallel3dFft
MD5Checksum
SelectionCollection
(
gmx
)
KeyValueTreeTransformRuleBuilder::ToValue
(
gmx
)
CompositeHelpTopic
(
gmx
)
GpuRegionTimerImpl
MDAtoms
(
gmx
)
SelectionCompiler
(
gmx
)
TpiTest
(
gmx::test::anonymous_namespace{tpitest.cpp}
)
CompositeSimulatorElement
(
gmx
)
GpuRegionTimerWrapper
MDLogger
(
gmx
)
SelectionData
(
gmx::internal
)
TprAndFileManager
(
gmx::test
)
ComputeGlobalsElement
(
gmx
)
GpuTaskAssignments
(
gmx
)
MdModuleNotification
(
gmx
)
SelectionEvaluator
(
gmx
)
TpxFileHeader
ConfMatch
(
gmx::test
)
GpuTaskAssignmentsBuilder
(
gmx
)
MDModules
(
gmx
)
SelectionFileOption
(
gmx
)
TrajectoryAnalysisCommandLineRunner
(
gmx
)
Constraints
(
gmx
)
GpuTaskMapping
(
gmx
)
MdModulesCheckpointReadingBroadcast
(
gmx
)
SelectionFileOptionInfo
(
gmx
)
TrajectoryAnalysisModule
(
gmx
)
ConstraintsElement
(
gmx
)
Grid
(Nbnxm)
MdModulesWriteCheckpointData
(
gmx
)
SelectionFileOptionStorage
(
gmx
)
TrajectoryAnalysisModuleData
(
gmx
)
ConstraintsTest
(
gmx::test::anonymous_namespace{constr.cpp}
)
Grid
(
gmx
)
MdrunCompressedXOutputTest
(
anonymous_namespace{compressed_x_output.cpp}
)
SelectionLocation
(
gmx
)
TrajectoryAnalysisModuleDataBasic
(
gmx::anonymous_namespace{analysismodule.cpp}
)
ContinuationFramePairManager
(
gmx::test::anonymous_namespace{exactcontinuation.cpp}
)
GridAxis
(
gmx
)
Mdrunner
(
gmx
)
SelectionOption
(
gmx
)
TrajectoryAnalysisModuleTestFixture
(
gmx::test
)
CorrelationBlockData::CoordData
(
gmx
)
GridPoint
(
gmx
)
MdrunnerBuilder
(
gmx
)
SelectionOptionBehavior
(
gmx
)
TrajectoryAnalysisRunnerCommon
(
gmx
)
CoordState
(
gmx
)
GridSet
(Nbnxm)
MdrunNoAppendContinuationIsExact
(
gmx::test::anonymous_namespace{exactcontinuation.cpp}
)
SelectionOptionInfo
(
gmx
)
TrajectoryAnalysisSettings
(
gmx
)
HardwareTopology::Core
(
gmx
)
GridSetData
(Nbnxm)
MdrunOptions
(
gmx
)
SelectionOptionManager
(
gmx
)
TrajectoryComparison
(
gmx::test
)
BoundingBox::Corner
(Nbnxm)
GridWork
(Nbnxm)
MdrunRerunTest
(
gmx::test::anonymous_namespace{rerun.cpp}
)
SelectionOptionStorage
(
gmx
)
TrajectoryElement
(
gmx
)
DispersionCorrection::Correction
GromacsException
(
gmx
)
MdrunTestFixture
(
gmx::test
)
SelectionParserParameter
(
gmx
)
TrajectoryElementBuilder
(
gmx
)
CorrelationBlockData
(
gmx
)
GromppTest
(
anonymous_namespace{grompp.cpp}
)
MdrunTestFixtureBase
(
gmx::test
)
SelectionParserSymbol
(
gmx
)
TrajectoryFileOpener
(
gmx
)
CorrelationGrid
(
gmx
)
OptionSectionImpl::Group
(
gmx::internal
)
MempoolGroupReserver
(
anonymous_namespace{evaluate.cpp}
)
SelectionParserSymbolIterator
(
gmx
)
TrajectoryFrame
(
gmx
)
CorrelationTensor
(
gmx
)
H
MempoolSelelemReserver
(
anonymous_namespace{evaluate.cpp}
)
SelectionParserSymbolTable
(
gmx
)
TrajectoryFrameMatchSettings
(
gmx::test
)
CpuInfo
(
gmx
)
MessageStringCollector
(
gmx
)
SelectionParserValue
(
gmx
)
TrajectoryFrameReader
(
gmx::test
)
Constraints::CreationHelper
(
gmx
)
HardwareTopology
(
gmx
)
MessageStringContext
(
gmx
)
SelectionPosition
(
gmx
)
TrajectoryFrameWriter
(
gmx
)
CrossCorrelationEvaluationHelperValues
(
gmx::anonymous_namespace{densityfit.cpp}
)
HashedMap
(
gmx
)
MessageWriterFileNoThrow
(
gmx::anonymous_namespace{exceptions.cpp}
)
SelectionOptionManager::Impl::SelectionRequest
(
gmx
)
TrajectoryFrameWriterTest
(
gmx::test
)
CrossCorrelationGradientAtVoxel
(
gmx::anonymous_namespace{densityfit.cpp}
)
HelpExportCompletion
(
gmx::anonymous_namespace{cmdlinehelpmodule.cpp}
)
MessageWriterString
(
gmx::anonymous_namespace{exceptions.cpp}
)
SelectionTopologyProperties
(
gmx
)
TrajectoryTolerances
(
gmx::test
)
CrystallographicLabels
(
gmx
)
HelpExportReStructuredText
(
gmx::anonymous_namespace{cmdlinehelpmodule.cpp}
)
MessageWriterTextWriter
(
gmx::anonymous_namespace{exceptions.cpp}
)
SelectionTreeElement
(
gmx
)
TranslateAndScale
(
gmx
)
cu_atomdata
HelpLinks
(
gmx
)
MimicCommunicator
(
gmx
)
SelelemTemporaryValueAssigner
(
anonymous_namespace{evaluate.cpp}
)
U
cu_nbparam
HelpManager
(
gmx
)
MimicTest
(
gmx::test
)
SelMethodEvalContext
(
gmx
)
CubicSplineTable
(
gmx
)
HelpWriterContext
(
gmx
)
MindistAction
(
gmx::anonymous_namespace{nbsearch.cpp}
)
SetAtoms
(
gmx
)
UniformIntDistribution
(
gmx
)
D
HistogramSize
(
gmx
)
MockAverageHistogram
(
anonymous_namespace{histogram.cpp}
)
SetAtomsSupportedFiles
(
gmx::test
)
UniformRealDistribution
(
gmx
)
history_t
MockModule
(
gmx::test
)
SetAtomsTest
(
gmx::test
)
UnionFinder
(
gmx
)
DataFileFinder
(
gmx
)
HostAllocationPolicy
(
gmx
)
MockOption
(
anonymous_namespace{abstractoptionstorage.cpp}
)
SetAtomsUnSupportedFiles
(
gmx::test
)
UnitCellInfo
DataFileInfo
(
gmx
)
HostAllocatorTest
(
gmx::test
)
MockOptionsModule
(
gmx::test
)
SetBothTimeTest
(
gmx::test
)
Update
(
gmx
)
DataFileOptions
(
gmx
)
HostAllocatorTestNoMem
(
gmx::test
)
MockOptionStorage
(
anonymous_namespace{abstractoptionstorage.cpp}
)
SetBox
(
gmx
)
UpdateGroupsCog
(
gmx
)
DataStorageRequester
(
gmx::test::anonymous_namespace{mock_datamodule.cpp}
)
HostAllocatorTestNoMemCopyable
(
gmx::test
)
ModularSimulator
(
gmx
)
SetForces
(
gmx
)
UserInputError
(
gmx
)
dd_corners_t
HostInteractionList
(
gmx
)
ModuleHelpTopic
(
gmx::anonymous_namespace{cmdlinehelpmodule.cpp}
)
SetForceSupportedFiles
(
gmx::test
)
V
DDBalanceRegionHandler
HostMemoryTest
(
gmx::test
)
AnalysisDataModuleManager::Impl::ModuleInfo
(
gmx
)
SetForceUnSupportedFiles
(
gmx::test
)
DDGridSetup
HardwareTopology::HWThread
(
gmx
)
ModuleSelection
(
gmx::test
)
SetPrecision
(
gmx
)
VirtualSiteTopology::VirtualSiteAngle
DDPairInteractionRanges
I
ModuleTest
(
gmx::test
)
SetPrecisionSupportedFiles
(
gmx::test
)
VirtualSiteTopology::VirtualSiteBond
DefaultExecutableEnvironment
(
gmx::anonymous_namespace{cmdlineprogramcontext.cpp}
)
MoleculeBlockIndices
SetPrecisionUnSupportedFiles
(
gmx::test
)
VirtualSiteConfiguration
DefaultInitializationAllocator
(
gmx
)
IAnalysisDataModule
(
gmx
)
MoleculeInformation
SetStartTime
(
gmx
)
VirtualSiteTopology
DefaultInputRedirector
(
gmx::anonymous_namespace{fileredirector.cpp}
)
ICheckpointHelperClient
(
gmx
)
MoleculePatch
SetStartTimeTest
(
gmx::test
)
VRescaleThermostat
(
gmx
)
DefaultOutputRedirector
(
gmx::anonymous_namespace{fileredirector.cpp}
)
ICommandLineModule
(
gmx
)
MoleculePatchDatabase
SetTimeStep
(
gmx
)
VsiteAtomMapping
DefaultProgramContext
(
gmx::anonymous_namespace{programcontext.cpp}
)
ICommandLineOptionsModule
(
gmx
)
MoleculeType
SetTimeStepTest
(
gmx::test
)
VsiteBondedInteraction
DensityFitting
(
gmx::anonymous_namespace{densityfitting.cpp}
)
ICommandLineOptionsModuleSettings
(
gmx
)
MrcDataStatistics
(
gmx
)
SettleTest
(
gmx::test::anonymous_namespace{settle.cpp}
)
VsiteBondParameter
DensityFittingAmplitudeLookup
(
gmx
)
IdentityFormatter
(
gmx
)
MrcDensityMapHeader
(
gmx
)
SettleTestParameters
(
gmx::test::anonymous_namespace{settle.cpp}
)
VsiteThread
DensityFittingForce
(
gmx
)
IEnergySignallerClient
(
gmx
)
MrcDensityMapOfFloatFromFileReader
(
gmx
)
SetVelocities
(
gmx
)
W
DensityFittingForceProvider
(
gmx
)
IExceptionInfo
(
gmx::internal
)
MrcDensityMapOfFloatReader
(
gmx
)
SetVelocitySupportedFiles
(
gmx::test
)
DensityFittingForceProviderState
(
gmx
)
IExecutableEnvironment
(
gmx
)
MrcDensityMapOfFloatWriter
(
gmx
)
SetVelocityUnSupportedFiles
(
gmx::test
)
WorkDivision
DensityFittingModuleInfo
(
gmx
)
IFileInputRedirector
(
gmx
)
MrcDensitySkewData
(
gmx
)
ShakeTest
(
gmx::anonymous_namespace{shake.cpp}
)
WrapperToString
(
gmx::anonymous_namespace{helpwritercontext.cpp}
)
DensityFittingOptions
(
gmx
)
IFileMatcher
(
gmx::test
)
MultiDimArray
(
gmx
)
GaussianSpreadKernelParameters::Shape
(
gmx
)
WrapperToVector
(
gmx::anonymous_namespace{helpwritercontext.cpp}
)
DensityFittingOutputProvider
(
gmx
)
IFileMatcherSettings
(
gmx::test
)
MultiSimTest
(
gmx::test
)
HelpWriterContext::Impl::SharedState
(
gmx
)
X
DensityFittingParameters
(
gmx
)
IFileOutputRedirector
(
gmx
)
N
ShellFCElement
(
gmx
)
DensityFittingSimulationParameterSetup
(
gmx::anonymous_namespace{densityfitting.cpp}
)
IForceProvider
(
gmx
)
SignallerBuilder
(
gmx
)
gpu_timers_t::XFTransfers
(Nbnxm)
DensityFittingTest
(
gmx::test
)
IHelpExport
(
gmx::anonymous_namespace{cmdlinehelpmodule.cpp}
)
nb_staging
SignalTest
(
gmx::test
)
XvgMatch
(
gmx::test
)
DensitySimilarityCrossCorrelation
(
gmx::anonymous_namespace{densityfit.cpp}
)
IHelpTopic
(
gmx
)
NeighborSearchSignaller
(
gmx
)
Simd4DBool
(
gmx
)
A
|
B
|
C
|
D
|
E
|
F
|
G
|
H
|
I
|
K
|
L
|
M
|
N
|
O
|
P
|
Q
|
R
|
S
|
T
|
U
|
V
|
W
|
X
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