.. _gmx helixorient: gmx helixorient =============== Synopsis -------- .. parsed-literal:: gmx helixorient [:strong:`-s` :emphasis:`[<.tpr>]`] [:strong:`-f` :emphasis:`[<.xtc/.trr/...>]`] [:strong:`-n` :emphasis:`[<.ndx>]`] [:strong:`-oaxis` :emphasis:`[<.dat>]`] [:strong:`-ocenter` :emphasis:`[<.dat>]`] [:strong:`-orise` :emphasis:`[<.xvg>]`] [:strong:`-oradius` :emphasis:`[<.xvg>]`] [:strong:`-otwist` :emphasis:`[<.xvg>]`] [:strong:`-obending` :emphasis:`[<.xvg>]`] [:strong:`-otilt` :emphasis:`[<.xvg>]`] [:strong:`-orot` :emphasis:`[<.xvg>]`] [:strong:`-b` :emphasis:`