.. _gmx msd: gmx msd ======= Synopsis -------- .. parsed-literal:: gmx msd [:strong:`-f` :emphasis:`[<.xtc/.trr/...>]`] [:strong:`-s` :emphasis:`[<.tpr/.gro/...>]`] [:strong:`-n` :emphasis:`[<.ndx>]`] [:strong:`-o` :emphasis:`[<.xvg>]`] [:strong:`-mol` :emphasis:`[<.xvg>]`] [:strong:`-pdb` :emphasis:`[<.pdb>]`] [:strong:`-b` :emphasis:`