mrcserializer.cpp File Reference

#include "gmxpre.h"
#include "mrcserializer.h"
#include "config.h"
#include "gromacs/fileio/mrcdensitymapheader.h"
#include "gromacs/utility/inmemoryserializer.h"

Include dependency graph for mrcserializer.cpp:

Description

Implements methods from mrcserializer.h.

Author

Christian Blau cblau.nosp@m.@gwd.nosp@m.g.de

Enumerations
enum	gmx::anonymous_namespace{mrcserializer.cpp}::MachineStamp : int32_t { gmx::anonymous_namespace{mrcserializer.cpp}::MachineStamp::bigEndian = 0x11110000, gmx::anonymous_namespace{mrcserializer.cpp}::MachineStamp::smallEndian = 0x44440000 }
	Machine stamp to indicate endianess of mrc/ccp4 file. As named in "EMDB Map Distribution Format Description Version 1.01 (c) emdatabank.org 2014" The first two bytes of a 4 byte unsigned int are used to indicate endianess: 0x11 0x11 big endian 0x44 0x44 small endian Byte-swap data if appropriate, when transferring data files between machines. More...

Functions
template<typename ContainerType >
std::enable_if_t< std::is_same < typename ContainerType::value_type, int32_t >::value, void >	gmx::anonymous_namespace{mrcserializer.cpp}::serialize (ISerializer *serializer, ContainerType *valueContainer)
	Serialize a container of int32_t values. Serializes all containers with value_type int32_t that may looped over in a range based for loop and have modifiable elements. More...
template<typename ContainerType >
std::enable_if_t< std::is_same < typename ContainerType::value_type, float >::value, void >	gmx::anonymous_namespace{mrcserializer.cpp}::serialize (ISerializer *serializer, ContainerType *valueContainer)
	Serialize a container of float values. Serializes all containers with value_type float that may looped over in a range based for loop and have modifiable elements. More...
void	gmx::anonymous_namespace{mrcserializer.cpp}::serializeIndex (ISerializer *serializer, int32_t *index)
	Serialize and convert from FORTRAN 1-based to C 0-based indices when reading and vice versa when writing.
void	gmx::anonymous_namespace{mrcserializer.cpp}::serializeIndices (ISerializer *serializer, std::array< int32_t, 3 > *valueArray)
	Serializes an integer array and add unity when writing, substracting unity when reading.
template<class IntegralType >
std::enable_if_t <(std::is_integral < IntegralType >::value||std::is_enum < IntegralType >::value), void >	gmx::anonymous_namespace{mrcserializer.cpp}::serializeAsInt32 (ISerializer *serializer, IntegralType *value)
	Serialize input as int32_t via static casting. More...
float	gmx::anonymous_namespace{mrcserializer.cpp}::mrcUnitsToNm (float mrcValue)
	Convert MRC distances to nm.
float	gmx::anonymous_namespace{mrcserializer.cpp}::nmToMrcUnits (float nmValue)
	Convert nm to MRC distances.
void	gmx::anonymous_namespace{mrcserializer.cpp}::serializeDistance (ISerializer *serializer, float *distance)
	Serialize and convert between MRC and GROMACS distance units.
void	gmx::anonymous_namespace{mrcserializer.cpp}::serializeCrystallographicSkewData (ISerializer *serializer, MrcDensitySkewData *skewData)
	Serialize the skew data, words 25-37 in an mrc file.
void	gmx::anonymous_namespace{mrcserializer.cpp}::doMrcDensityMapHeader (ISerializer *serializer, MrcDensityMapHeader *mrcFile)
	Symmetrise and de-serializes the mrc density map header. More...
void	gmx::serializeMrcDensityMapHeader (ISerializer *serializer, const MrcDensityMapHeader &mrcHeader)
	Serializes an MrcDensityMapHeader from a given serializer. More...
MrcDensityMapHeader	gmx::deserializeMrcDensityMapHeader (ISerializer *serializer)
	Deserializes an MrcDensityMapHeader from a given serializer. More...

Variables
constexpr float	gmx::anonymous_namespace{mrcserializer.cpp}::c_nmToMrcUnits = 10
	conversion constant from nm to MRC distance units (Ångström)