- p -
- packedBoundingBoxes()
: Nbnxm::Grid
- paddedArrayRef()
: gmx::ArrayRefWithPadding< T >
- paddedConstArrayRef()
: gmx::ArrayRefWithPadding< T >
- paddedNumAtomsInColumn()
: Nbnxm::Grid
- paddedSize()
: gmx::PaddedVector< T, Allocator >
- PaddedVector()
: gmx::PaddedVector< T, Allocator >
- PairDistanceModuleData()
: gmx::analysismodules::anonymous_namespace{pairdist.cpp}::PairDistanceModuleData
- pairlistInnerRadius()
: nonbonded_verlet_t
- pairlistIsSimple()
: nonbonded_verlet_t
- pairlistOuterRadius()
: nonbonded_verlet_t
- PairlistParams()
: PairlistParams
- PairlistSet()
: PairlistSet
- pairlistSets()
: nonbonded_verlet_t
- paragraphBreak()
: gmx::HelpWriterContext
- ParallelConsistencyError()
: gmx::ParallelConsistencyError
- parallelDataStarted()
: gmx::IAnalysisDataModule
, gmx::AnalysisDataModuleParallel
, gmx::AnalysisDataProxy
, gmx::AnalysisDataSimpleHistogramModule
, gmx::AnalysisDataWeightedHistogramModule
- parallelizationFactor()
: gmx::AnalysisDataParallelOptions
- parallelSelection()
: gmx::TrajectoryAnalysisModuleData
- parallelSelections()
: gmx::TrajectoryAnalysisModuleData
- param()
: gmx::NormalDistribution< RealType >
, gmx::TabulatedNormalDistribution< RealType, tableBits >
, gmx::UniformIntDistribution< IntType >
, gmx::UniformRealDistribution< RealType >
, gmx::ExponentialDistribution< RealType >
, gmx::GammaDistribution< RealType >
- param_type()
: gmx::ExponentialDistribution< RealType >::param_type
, gmx::GammaDistribution< RealType >::param_type
, gmx::NormalDistribution< RealType >::param_type
, gmx::TabulatedNormalDistribution< RealType, tableBits >::param_type
, gmx::UniformIntDistribution< IntType >::param_type
, gmx::UniformRealDistribution< RealType >::param_type
- params()
: gmx::Bias
- pargsToOptions()
: gmx::anonymous_namespace{pargs.cpp}::OptionsAdapter
- ParrinelloRahmanBarostat()
: gmx::ParrinelloRahmanBarostat
- parse()
: gmx::CommandLineParser
- parseFromFile()
: gmx::SelectionCollection
- parseFromStdin()
: gmx::SelectionCollection
- parseFromString()
: gmx::SelectionCollection
- parseInteractive()
: gmx::SelectionCollection
- parseRequestedFromFile()
: gmx::SelectionOptionManager
- parseRequestedFromStdin()
: gmx::SelectionOptionManager
- parseRequestedFromString()
: gmx::SelectionOptionManager
- partialCleanUp()
: MoleculeInformation
- pbc()
: gmx::TrajectoryFrame
- perform3dFft()
: GpuParallel3dFft
- performPreviouslySkippedUpdates()
: gmx::PointState
- period()
: gmx::GridAxis
- periodicBoundaryConditionType()
: gmx::anonymous_namespace{densityfitting.cpp}::DensityFittingSimulationParameterSetup
- PhysicalNodeCommunicator()
: gmx::PhysicalNodeCommunicator
- pinningPolicy()
: gmx::HostAllocationPolicy
- placeSelectionsInRequests()
: gmx::SelectionOptionManager::Impl
- plotFormat()
: gmx::AnalysisDataPlotSettings
- plotSettings()
: gmx::TrajectoryAnalysisSettings
- PmeForceSenderGpu()
: gmx::PmeForceSenderGpu
- PmeGpuProgramImpl()
: PmeGpuProgramImpl
- PmeLoadBalanceHelper()
: gmx::PmeLoadBalanceHelper
- PmePpCommGpu()
: gmx::PmePpCommGpu
- pmePrinting()
: gmx::PmeLoadBalanceHelper
- point()
: gmx::Grid
- points()
: gmx::BiasState
- pointsAdded()
: gmx::IAnalysisDataModule
, gmx::AnalysisDataModuleSerial
, gmx::AnalysisDataModuleParallel
, gmx::AnalysisDataProxy
, gmx::AnalysisDataAverageModule
, gmx::AnalysisDataFrameAverageModule
, gmx::AnalysisDataDisplacementModule
, gmx::internal::BasicAverageHistogramModule
, gmx::AnalysisDataSimpleHistogramModule
, gmx::AnalysisDataWeightedHistogramModule
, gmx::AnalysisDataBinAverageModule
, gmx::AnalysisDataLifetimeModule
, gmx::AbstractPlotModule
, gmx::AnalysisDataPlotModule
, gmx::AnalysisDataVectorPlotModule
, gmx::analysismodules::anonymous_namespace{select.cpp}::IndexFileWriterModule
- pointSet()
: gmx::AnalysisDataFrameRef
, gmx::internal::AnalysisDataStorageFrameData
, gmx::test::AnalysisDataTestInputFrame
- pointSetCount()
: gmx::AnalysisDataFrameRef
, gmx::internal::AnalysisDataStorageFrameData
, gmx::test::AnalysisDataTestInputFrame
- PointState()
: gmx::PointState
- pop_back()
: gmx::KeyValueTreePath
, gmx::FixedCapacityVector< T, capacity >
- pop_last()
: gmx::KeyValueTreePath
- posCount()
: gmx::internal::SelectionData
, gmx::Selection
- position()
: gmx::Selection
- PositionCalculationCollection()
: gmx::PositionCalculationCollection
- positionsView()
: gmx::StatePropagatorData
- PotentialPointData()
: gmx::PotentialPointData
- prepareAndWriteFrame()
: gmx::TrajectoryFrameWriter
- prepareForPositionAssembly()
: gmx::ImdSession::Impl
- prepareMasterSocket()
: gmx::ImdSession::Impl
- prepareMDForces()
: gmx::ImdSession::Impl
- prepareMoleculesInImdGroup()
: gmx::ImdSession::Impl
- prepareReferenceData()
: gmx::test::anonymous_namespace{periodicactions.cpp}::PeriodicActionsTest
- prepareTest()
: gmx::test::SetVelocitySupportedFiles
, gmx::test::SetAtomsUnSupportedFiles
, gmx::test::SetAtomsSupportedFiles
, gmx::test::SetPrecisionSupportedFiles
, gmx::test::AnyOutputSupportedFiles
, gmx::test::NoOptionalOutput
, gmx::test::OutputSelectorDeathTest
, gmx::test::SetVelocityUnSupportedFiles
, gmx::test::SetForceSupportedFiles
, gmx::test::SetForceUnSupportedFiles
, gmx::test::SetPrecisionUnSupportedFiles
- prepareVmdForces()
: gmx::ImdSession::Impl
- prependContext()
: gmx::anonymous_namespace{exceptions.cpp}::ErrorMessage
, gmx::GromacsException
- PreprocessingAtomTypes()
: PreprocessingAtomTypes
- present()
: gmx::AnalysisDataPointSetRef
, gmx::test::AnalysisDataTestInputPointSet
, gmx::AnalysisDataFrameRef
- presentAllData()
: gmx::test::AnalysisDataTestFixture
- presentData()
: gmx::AnalysisDataModuleManager::Impl
- presentDataFrame()
: gmx::test::AnalysisDataTestFixture
- pressure()
: gmx::EnergyElement
- previousBlockIndex()
: gmx::CorrelationBlockData
- previousBox()
: gmx::StatePropagatorData
- previousPositionsView()
: gmx::StatePropagatorData
- printCycles()
: SearchCycleCounting
- printDebugInfo()
: gmx::Selection
- printInfo()
: gmx::Selection
- printInitializationToLog()
: gmx::Bias
- printThanks()
: gmx::CommandLineModuleManager::Impl
- printTree()
: gmx::PositionCalculationCollection
, gmx::SelectionCollection
- printTypes()
: PreprocessingAtomTypes
- printXvgrInfo()
: gmx::SelectionCollection
- PrivateImplPointer()
: gmx::PrivateImplPointer< Impl >
- process()
: gmx::OutputRequirementOptionDirector
- processAll()
: gmx::OptionStorageTemplate< T >
, gmx::AbstractOptionStorage
- processAwhFrame()
: AwhReader
- processCommonOptions()
: gmx::CommandLineModuleManager::Impl
- processFrame()
: gmx::SetAtoms
, gmx::OutputSelector
, gmx::SetPrecision
, gmx::SetTimeStep
, gmx::IOutputAdapter
, gmx::SetVelocities
, gmx::SetForces
, gmx::SetStartTime
, gmx::SetBox
- processId()
: gmx::BinaryInformationSettings
- processItem()
: gmx::test::TestReferenceChecker::Impl
- processMarkup()
: gmx::HelpWriterContext::Impl
- processSet()
: gmx::AbstractOptionStorage
, gmx::OptionStorageTemplate< T >
- processSetValues()
: gmx::OptionStorageTemplate< T >
- processValue()
: gmx::OptionStorageTemplateSimple< T >
- programName()
: gmx::CommandLineProgramContext
, gmx::anonymous_namespace{programcontext.cpp}::DefaultProgramContext
, gmx::IProgramContext
, gmx::test::anonymous_namespace{testinit.cpp}::TestProgramContext
- prop()
: AtomProperties
- Propagator()
: gmx::Propagator< algorithm >
- ProxyPtr()
: ProxyPtr< T >
- prScalingCallback()
: gmx::Propagator< algorithm >
- ptr()
: Nbnxm::BoundingBox::Corner
- pull_group_work_t()
: pull_group_work_t
- push_back()
: gmx::FixedCapacityVector< T, capacity >
- putOnGrid()
: Nbnxm::GridSet