- r -
- range()
: gmx::AnalysisHistogramSettingsInitializer
- Range()
: gmx::Range< T >
- RangeError()
: gmx::RangeError
- rank()
: gmx::extents< StaticExtents >
, gmx::basic_mdspan< ElementType, Extents, LayoutPolicy, AccessorPolicy >
, gmx::detail::extents_analyse< R, E0, StaticExtents...>
, gmx::detail::extents_analyse< R, dynamic_extent, StaticExtents...>
, gmx::detail::extents_analyse< 0 >
- rank_dynamic()
: gmx::detail::extents_analyse< R, E0, StaticExtents...>
, gmx::detail::extents_analyse< R, dynamic_extent, StaticExtents...>
, gmx::detail::extents_analyse< 0 >
, gmx::extents< StaticExtents >
, gmx::basic_mdspan< ElementType, Extents, LayoutPolicy, AccessorPolicy >
- rawIndex()
: gmx::RangePartitioning
- rbegin()
: gmx::ArrayRef< T >
, gmx::EnumerationArray< EnumType, DataType, ArraySize >
, gmx::FixedCapacityVector< T, capacity >
- RdfModuleData()
: gmx::analysismodules::anonymous_namespace{rdf.cpp}::RdfModuleData
- readAll()
: gmx::TextReader
- readCheckpointDataOnMaster()
: gmx::anonymous_namespace{densityfitting.cpp}::DensityFitting
- readCommand()
: gmx::ImdSession::Impl
- readDouble()
: gmx::test::TestReferenceChecker
- readFileToString()
: gmx::TextReader
- readFloat()
: gmx::test::TestReferenceChecker
- reading()
: gmx::FileIOXdrSerializer
, gmx::ISerializer
- readInt32()
: gmx::test::TestReferenceChecker
- readInt64()
: gmx::test::TestReferenceChecker
- readInteger()
: gmx::test::TestReferenceChecker
- readInternalParametersFromKvt()
: gmx::DensityFittingOptions
- readLine()
: gmx::StandardInputStream
, gmx::TextInputFile
, gmx::StringInputStream
, gmx::TextReader
, gmx::TextInputStream
- readNextFrame()
: gmx::TrajectoryAnalysisRunnerCommon
, gmx::test::EnergyFrameReader
, gmx::test::TrajectoryFrameReader
- readReferenceDensityFromFile()
: gmx::anonymous_namespace{densityfitting.cpp}::DensityFittingSimulationParameterSetup
- readString()
: gmx::test::TestReferenceChecker
- readUChar()
: gmx::test::TestReferenceChecker
- readVmdForces()
: gmx::ImdSession::Impl
- readWriteFlags()
: gmx::FileNameOption
- receiveForceFromPmeCudaDirect()
: gmx::PmePpCommGpu
, gmx::PmePpCommGpu::Impl
- redirectStringToStdin()
: gmx::test::StdioTestHelper
- reduceNumBlocks()
: gmx::RangePartitioning
- referenceDensity()
: gmx::anonymous_namespace{densityfitting.cpp}::DensityFittingSimulationParameterSetup
- referenceDensityFileName()
: gmx::DensityFittingOptions
- refId()
: gmx::SelectionPosition
- refIds()
: gmx::Selection
- refIndex()
: gmx::AnalysisNeighborhoodPair
- refreshMassesAndCharges()
: gmx::internal::SelectionData
- refreshName()
: gmx::internal::SelectionData
- registerAnalysisDataset()
: gmx::TrajectoryAnalysisModule
- registerAwhWithPull()
: gmx::Awh
- registerBasicDataset()
: gmx::TrajectoryAnalysisModule
- registerClient()
: gmx::TopologyHolder
- registerEnergyCallback()
: gmx::IEnergySignallerClient
- registerLastStepCallback()
: gmx::ILastStepSignallerClient
- registerLoggingCallback()
: gmx::ILoggingSignallerClient
- registerModule()
: gmx::CommandLineModuleManager
, gmx::TrajectoryAnalysisCommandLineRunner
- registerModuleDirect()
: gmx::ICommandLineOptionsModule
- registerModuleFactory()
: gmx::ICommandLineOptionsModule
- registerNSCallback()
: gmx::INeighborSearchSignallerClient
- registerOption()
: gmx::SelectionOptionManager
- registerSignallerClient()
: gmx::SignallerBuilder< Signaller >
, gmx::TrajectoryElementBuilder
- registerStopCondition()
: gmx::StopHandlerBuilder
- registerSubTopic()
: gmx::AbstractCompositeHelpTopic
- registerTrajectorySignallerCallback()
: gmx::ITrajectorySignallerClient
- registerTrajectoryWriterCallback()
: gmx::ITrajectoryWriterClient
- registerWriterClient()
: gmx::TrajectoryElementBuilder
- reinit()
: gmx::PmePpCommGpu
, gmx::PmePpCommGpu::Impl
- reinitHalo()
: gmx::GpuHaloExchange
- relativeToleranceAsFloatingPoint()
: gmx::test::FloatingPointTolerance
- relativeToleranceAsPrecisionDependentFloatingPoint()
: gmx::test::FloatingPointTolerance
- relativeToleranceAsPrecisionDependentUlp()
: gmx::test::FloatingPointTolerance
- relativeToleranceAsUlp()
: gmx::test::FloatingPointTolerance
- removeCalculation()
: gmx::PositionCalculationCollection::Impl
- removeFiles()
: gmx::test::TestFileManager::Impl
- removeMolecularShifts()
: gmx::ImdSession::Impl
- removeTerminatingLineFeed()
: gmx::anonymous_namespace{exceptions.cpp}::MessageWriterString
- rend()
: gmx::ArrayRef< T >
, gmx::FixedCapacityVector< T, capacity >
- renumberTypes()
: PreprocessingAtomTypes
- reopenRegionCpu()
: DDBalanceRegionHandler
- RepeatingOptionSection()
: gmx::RepeatingOptionSection< T >
- RepeatingOptionSectionHandle()
: gmx::RepeatingOptionSectionHandle< T >
- RepeatingOptionSectionStorage()
: gmx::RepeatingOptionSectionStorage< T >
- replaceLinks()
: gmx::HelpWriterContext::Impl
- reportGpuUsage()
: gmx::GpuTaskAssignments
- representativeItem()
: gmx::UnionFinder
- representativeValue()
: gmx::MappedUnionFinder
- requestFrame()
: gmx::test::TopologyManager
- requestOptionDelayedParsing()
: gmx::SelectionOptionManager
- RequestsClearer()
: gmx::SelectionOptionManager::Impl::RequestsClearer
- requestStorage()
: gmx::AbstractAnalysisData
, gmx::AnalysisDataStorage
- requestStorageInternal()
: gmx::AbstractAnalysisData
- requestUnsetRequiredOptions()
: gmx::SelectionOptionManager::Impl
- required()
: gmx::OptionTemplate< T, U >
- required_span_size()
: gmx::layout_right::mapping< Extents >
- requiredTopologyInfoForType()
: gmx::PositionCalculationCollection
- requiredTopologyProperties()
: gmx::SelectionCollection
, gmx::SelectionTreeElement
- requiredTopologyPropertiesForPositionType()
: gmx::SelectionCollection::Impl
- requiresIndexGroups()
: gmx::SelectionCollection
, gmx::SelectionTreeElement
- resampleDoubleBinWidth()
: gmx::AbstractAverageHistogram
- reserve()
: gmx::IOptionValueStore< T >
, gmx::MDAtoms
, gmx::internal::EnumIndexStore< EnumType >
, gmx::OptionValueStoreNull< T >
, anonymous_namespace{evaluate.cpp}::MempoolSelelemReserver
, anonymous_namespace{evaluate.cpp}::MempoolGroupReserver
- reserveWithPadding()
: gmx::PaddedVector< T, Allocator >
- reset()
: gmx::NormalDistribution< RealType >
, gmx::TabulatedNormalDistribution< RealType, tableBits >
, gmx::UniformIntDistribution< IntType >
, gmx::UniformRealDistribution< RealType >
, gmx::AnalysisNeighborhoodSearch
, gmx::PrivateImplPointer< Impl >
, gmx::GammaDistribution< RealType >
, GpuRegionTimerWrapper< GpuRegionTimerImpl >
, GpuRegionTimerImpl
, gmx::ExponentialDistribution< RealType >
- resetCounters()
: gmx::ResetHandler
- ResetHandler()
: gmx::ResetHandler
- residueName()
: AtomProxy
- residueNumber()
: AtomProxy
- ResidueTypeEntry()
: ResidueTypeEntry
- resize()
: gmx::MDAtoms
, gmx::MultiDimArray< TContainer, Extents, LayoutPolicy >
- resizeWithPadding()
: gmx::PaddedVector< T, Allocator >
- resolveExternalGroups()
: gmx::SelectionCollection::Impl
- resolveIndexGroupReference()
: gmx::SelectionTreeElement
- restart()
: gmx::ThreeFry2x64General< rounds, internalCounterBits >
- restoreFromHistory()
: gmx::BiasState
, gmx::CoordState
, gmx::CorrelationTensor
, gmx::HistogramSize
, gmx::CorrelationBlockData
- restoreOriginalPositions()
: gmx::internal::SelectionData
- restoreStateFromHistory()
: gmx::CorrelationGrid
, gmx::Awh
, gmx::Bias
- RestraintForceProvider()
: gmx::RestraintForceProvider
- RestraintManager()
: gmx::RestraintManager
- RestraintMDModule()
: gmx::RestraintMDModule
- RestraintMDModuleImpl()
: gmx::RestraintMDModuleImpl
- restype()
: AtomProperties
- result()
: gmx::anonymous_namespace{helpwritercontext.cpp}::WrapperToString
, gmx::anonymous_namespace{exceptions.cpp}::MessageWriterString
, gmx::anonymous_namespace{helpwritercontext.cpp}::WrapperToVector
- rmsd()
: gmx::Constraints
- rmsdData()
: gmx::Constraints
- rootChecker()
: gmx::test::TestReferenceData
, gmx::test::CommandLineTestBase
- rootElement()
: gmx::internal::SelectionData
- RootHelpTopic()
: gmx::anonymous_namespace{cmdlinehelpmodule.cpp}::RootHelpTopic
- rootObject()
: gmx::KeyValueTreeBuilder
- rootSection()
: gmx::Options
- rotateBuffer()
: gmx::internal::AnalysisDataStorageImpl
- roundRange()
: gmx::AnalysisHistogramSettingsInitializer
- rowCount()
: gmx::AbstractAnalysisArrayData
- RstParagraphIterator()
: gmx::RstParagraphIterator
- rules()
: gmx::KeyValueTreeTransformRulesScoped
- run()
: gmx::ISimulator
, gmx::ICommandLineOptionsModule
, gmx::DomDecHelper
, gmx::LegacySimulator
, anonymous_namespace{minimize.cpp}::EnergyEvaluator
, gmx::ICommandLineModule
, gmx::CommandLineHelpModule
, gmx::CheckpointHelper
, gmx::CommandLineModuleManager
, anonymous_namespace{legacymodules.cpp}::ObsoleteToolModule
, gmx::ModularSimulator
, gmx::anonymous_namespace{cmdlinemodulemanager.cpp}::CMainCommandLineModule
, gmx::PmeLoadBalanceHelper
, gmx::ImdSession::Impl
- runAsMain()
: gmx::TrajectoryAnalysisCommandLineRunner
, gmx::ICommandLineOptionsModule
- runAsMainCMain()
: gmx::CommandLineModuleManager
- runAsMainCMainWithSettings()
: gmx::CommandLineModuleManager
- runAsMainSingleModule()
: gmx::CommandLineModuleManager
- runExitsNormallyTest()
: gmx::test::MultiSimTest
- runFirstMdrun()
: gmx::test::TerminationHelper
- runMaxhTest()
: gmx::test::MultiSimTest
- runModuleDirect()
: gmx::test::CommandLineTestHelper
- runModuleFactory()
: gmx::test::CommandLineTestHelper
- runSecondMdrun()
: gmx::test::TerminationHelper
- runSecondMdrunWithNoAppend()
: gmx::test::TerminationHelper
- runTest()
: anonymous_namespace{grompp.cpp}::GromppTest
, gmx::test::anonymous_namespace{tpitest.cpp}::TpiTest
, gmx::test::AbstractTrajectoryAnalysisModuleTestFixture
, gmx::anonymous_namespace{shake.cpp}::ShakeTest
, gmx::test::anonymous_namespace{pmetest.cpp}::PmeTest
, gmx::test::anonymous_namespace{pmesolvetest.cpp}::PmeSolveTest
, gmx::test::anonymous_namespace{pmegathertest.cpp}::PmeGatherTest
, gmx::test::anonymous_namespace{pmesplinespreadtest.cpp}::PmeSplineAndSpreadTest
, gmx::test::anonymous_namespace{pmebsplinetest.cpp}::PmeBSplineModuliTest
, gmx::test::ModuleTest
- rvec_array()
: gmx::PaddedVector< T, Allocator >
- RVecMatcher()
: gmx::test::RVecMatcher< FloatType >