- s -
- s
: BondedInteraction
, em_state_t
, gmx_ana_selvalue_t
- s_defaultEnergyTermsToCompare
: gmx::test::EnergyComparison
- s_defaultTrajectoryTolerances
: gmx::test::TrajectoryComparison
- s_globalOutputTempDirectory
: gmx::test::TestFileManager::Impl
- s_hasCompatibleGpus
: gmx::test::anonymous_namespace{pmetest.cpp}::PmeTest
, gmx::test::anonymous_namespace{settle.cpp}::SettleTest
- s_inputDirectory
: gmx::test::TestFileManager::Impl
- s_nPoints
: gmx::test::SimdBaseTest
- s_runners_
: gmx::test::anonymous_namespace{leapfrog.cpp}::LeapFrogTest
- s_simulationDatabaseDirectory
: gmx::test::TestFileManager::Impl
- s_workMemSize_
: gmx::test::anonymous_namespace{simd_floatingpoint_util.cpp}::SimdFloatingpointUtilTest
- sbase
: gmx_ana_poscalc_t
- sc
: gmx_sel_lexer_t
- sc_
: gmx::SelectionCollection::Impl
- sd
: gmx::Update::Impl
- searchCount_
: SearchCycleCounting
- sectionDepth_
: gmx::HelpWriterContext::Impl
- sectionStack_
: gmx::OptionsAssigner::Impl
- seed
: gmx_repl_ex
- seed_
: gmx::test::BiasTest
- sel
: gmx_ana_selcollection_t
- selections_
: gmx::TrajectoryAnalysisModuleData::Impl
- sendAtom
: gmx_domdec_specat_comm_t
- sendxbuf
: gmx::ImdSession::Impl
- seqIndex_
: gmx::test::TestReferenceChecker::Impl
- sessionPossible
: gmx::ImdSession::Impl
- set
: gmx::SimulationSignal
- set_poscoll
: gmx_ana_selmethod_t
- settings
: PmeGpu
- settings_
: gmx::internal::BasicHistogramImpl
- sh_ewald
: cu_nbparam
, cl_nbparam
, cl_nbparam_params
- sh_lj_ewald
: cu_nbparam
, cl_nbparam
, cl_nbparam_params
- shared
: gmx::HardwareTopology::Cache
- sharedMemorySize
: KernelLaunchConfig
- shift0
: DDPairInteractionRanges
- shift1
: DDPairInteractionRanges
- shift_vec
: cu_atomdata
, cl_atomdata
- shift_vec_elem_size
: cl_atomdata
- shortDescription
: gmx::NonbondedBenchmarkInfo
- sig
: gmx::SimulationSignal
- sigma
: t_UmbrellaWindow
- sigma3A
: t_mdatoms
- sigma3B
: t_mdatoms
- sigma_
: gmx::DensityFittingForce::Impl
, gmx::GaussTransform3D::Impl
, gmx::GaussianSpreadKernelParameters::Shape
- sigmaA
: t_mdatoms
- sigmaB
: t_mdatoms
- signals_
: gmx::test::SignalTest
- sigSmoothIact
: t_UmbrellaOptions
- sim
: gmx_multisim_t
- simdInternal_
: gmx::SimdDInt32
, gmx::SimdDBool
, gmx::SimdDIBool
, gmx::SimdFloat
, gmx::SimdFInt32
, gmx::SimdFBool
, gmx::SimdFIBool
, gmx::Simd4Double
, gmx::Simd4DBool
, gmx::Simd4Float
, gmx::Simd4FBool
, gmx::SimdDouble
- similarityMeasureMethod_
: gmx::DensityFittingParameters
- simulation_part
: CheckpointHeaderContents
- singleModule_
: gmx::CommandLineModuleManager::Impl
- size
: gmx::HardwareTopology::Cache
, gmx_sel_mempool_block_t
- size_
: gmx::PhysicalNodeCommunicator
, gmx::test::MultiSimTest
- sizeOfTprBody
: TpxFileHeader
- skewData_
: gmx::MrcDensityMapHeader
- slab_buffer
: gmx_enfrotgrp
- slab_center
: gmx_enfrotgrp
- slab_center_ref
: gmx_enfrotgrp
- slab_data
: gmx_enfrotgrp
- slab_first
: gmx_enfrotgrp
- slab_first_ref
: gmx_enfrotgrp
- slab_innersumvec
: gmx_enfrotgrp
- slab_last
: gmx_enfrotgrp
- slab_last_ref
: gmx_enfrotgrp
- slab_torque_v
: gmx_enfrotgrp
- slab_weights
: gmx_enfrotgrp
- socket
: gmx::ImdSession::Impl
- socketRankInMachine
: gmx::CpuInfo::LogicalProcessor
, gmx::HardwareTopology::LogicalProcessor
- sockets
: gmx::HardwareTopology::Machine
- solveMaxWorkGroupSize
: PmeGpuProgramImpl
- sortBuffer
: Nbnxm::GridWork
- source_
: gmx::test::MockAnalysisDataModule::Impl
- spaceGroup_
: gmx::MrcDensityMapHeader
- spacing
: pme_setup_t
, gmx::NumericalSplineTableInput
- span
: t_methoddata_insolidangle
- spas
: gmx_domdec_specat_comm_t
- splineDataByPmeOrder
: gmx::test::anonymous_namespace{pmegathertest.cpp}::AtomSizedData
- splineDataSize
: PmeGpuSpecific
- splineDataSizeAlloc
: PmeGpuSpecific
- splineDerivatives
: gmx::test::anonymous_namespace{pmegathertest.cpp}::AtomAndPmeOrderSizedData
- splineValues
: gmx::test::anonymous_namespace{pmegathertest.cpp}::AtomAndPmeOrderSizedData
- splineValuesOffset
: PmeGpuGridParams
- splineValuesSize
: PmeGpuSpecific
- splineValuesSizeAlloc
: PmeGpuSpecific
- spost_
: gmx::SelectionCollection::Impl
- spreadRange_
: gmx::GaussTransform3D::Impl
- spreadTask
: InterdependentTask
- spreadWidthMultiplesOfSigma_
: gmx::GaussianSpreadKernelParameters::Shape
- spreadWorkGroupSize
: PmeGpuProgramImpl
- sqrt_c6A
: t_mdatoms
- sqrt_c6B
: t_mdatoms
- staging
: PmeGpu
- start_time_stamp
: gmx_walltime_accounting
- startIndex
: gmx::SelectionLocation
- startingBehavior
: gmx::ISimulator
, gmx::anonymous_namespace{handlerestart.cpp}::StartingBehaviorHandler
- startTimeValue
: gmx::OutputRequirements
- stat
: gmx_device_info_t
- state_
: gmx::AnalysisDataModuleManager::Impl
, gmx::test::anonymous_namespace{energyoutput.cpp}::EnergyOutputTest
, gmx::HelpWriterContext::Impl
- state_global
: gmx::ISimulator
- stateChanged
: gmx::StepWorkload
- statusWriter
: gmx_sel_lexer_t
- step
: CheckpointHeaderContents
, gmx_pme_comm_n_box_t
- stepchange
: t_UmbrellaOptions
- stepsSinceLastCalculation_
: gmx::DensityFittingForceProviderState
- stepUpdateContrib
: t_UmbrellaOptions
- stop_cond
: gmx_pme_comm_vir_ene_t
- stopHandlerBuilder
: gmx::ISimulator
- storage_
: gmx::AnalysisData::Impl
, gmx::internal::OptionSectionImpl
, gmx::internal::BasicHistogramImpl
, gmx::SelectionOptionManager::Impl::SelectionRequest
- storageInitialized_
: gmx::internal::OptionSectionImpl
- storageLimit_
: gmx::internal::AnalysisDataStorageImpl
- stpsz
: anonymous_namespace{edsam.cpp}::t_eigvec
- str
: gmx::SelectionParserValue
- stream
: KernelLaunchConfig
, gmx_nbnxn_ocl_t
, gmx_nbnxn_cuda_t
- stream_
: gmx::TextReader::Impl
- stride
: t_methoddata_merge
- subgroups_
: gmx::internal::OptionSectionImpl::Group
- subsections_
: gmx::internal::OptionSectionImpl
- subTopicMap_
: gmx::AbstractCompositeHelpTopic::Impl
- subTopics_
: gmx::AbstractCompositeHelpTopic::Impl
- sum_dg
: df_history_t
- sum_minvar
: df_history_t
- sum_variance
: df_history_t
- sum_weights
: df_history_t
- sumOverBlocksBlockWeightBlockWeightX
: gmx::CorrelationBlockData::CoordData
- sumSquaredDeviation
: gmx::LincsDeviations
- surfaceDist2_
: gmx::analysismodules::anonymous_namespace{rdf.cpp}::RdfModuleData
- svir_prev
: t_state
- swap
: gmx::ISimulator
- swapdim
: t_swap
- swapHistory
: ObservablesHistory
- symbols_
: gmx::SelectionParserSymbolTable::Impl
- symtab
: gmx_ana_selcollection_t
- syncSpreadGridD2H
: PmeGpuSpecific
- syntax
: gmx_ana_selmethod_help_t
- systemInfo_
: gmx::DomainDecompositionBuilder::Impl