Gromacs
2021-beta2-UNCHECKED
Main Page
Modules
Other Docs
Namespaces
Classes
Files
Examples
Class List
Class Index
Class Hierarchy
Class Members
All
Functions
Variables
Typedefs
Enumerations
Enumerator
Related Functions
a
b
c
d
e
f
g
h
i
j
k
l
m
n
o
p
q
r
s
t
u
v
w
x
y
z
~
All
Classes
Namespaces
Files
Functions
Variables
Typedefs
Enumerations
Enumerator
Friends
Macros
Groups
Pages
- i -
iBoundingBoxes() :
Nbnxm::Grid
iListInput() :
gmx::test::anonymous_namespace{bonded.cpp}::iListInput
Impl() :
gmx::AnalysisDataSimpleHistogramModule::Impl
,
gmx::CommandLineHelpContext::Impl
,
gmx::PmePpCommGpu::Impl
,
gmx::HelpWriterContext::Impl
,
gmx::OptionsAssigner::Impl
,
gmx::MrcDensityMapOfFloatReader::Impl
,
gmx::SelectionCollection::Impl
,
gmx::SelectionOptionManager::Impl
,
gmx::CommandLineHelpContext::Impl
,
gmx::MrcDensityMapOfFloatWriter::Impl
,
gmx::SelectionParserSymbol::Impl
,
gmx::SelectionParserSymbolIterator::Impl
,
gmx::DeviceStreamManager::Impl
,
gmx::SelectionParserSymbolIterator::Impl
,
gmx::TrajectoryAnalysisModuleData::Impl
,
gmx::AnalysisDataWeightedHistogramModule::Impl
,
gmx::CommandLineHelpWriter::Impl
,
gmx::ImdSession::Impl
,
gmx::TrajectoryAnalysisSettings::Impl
,
gmx::TextReader::Impl
,
gmx::GpuBonded::Impl
,
gmx::test::TestReferenceChecker::Impl
,
gmx::CommandLineModuleManager::Impl
,
gmx::DensityFittingForce::Impl
,
gmx::test::TestFileManager::Impl
,
gmx::GaussTransform3D::Impl
,
gmx::AnalysisDataLifetimeModule::Impl
,
gmx::CommandLineParser::Impl
,
gmx::GaussTransform3D::Impl
,
gmx::Update::Impl
,
gmx::DomainDecompositionBuilder::Impl
,
gmx::UpdateConstrainGpu::Impl
,
gmx::VirtualSitesHandler::Impl
,
gmx::test::MockAnalysisDataModule::Impl
,
gmx::PmeCoordinateReceiverGpu::Impl
,
gmx::TextTableFormatter::Impl
,
gmx::HelpManager::Impl
,
gmx::PmeForceSenderGpu::Impl
,
gmx::HelpLinks::Impl
,
gmx::HelpWriterContext::Impl
includeAll() :
gmx::AnalysisHistogramSettingsInitializer
,
gmx::AnalysisHistogramSettings
includeCurrentDir() :
gmx::DataFileOptions
includeDataset() :
gmx::test::AbstractTrajectoryAnalysisModuleTestFixture
InconsistentInputError() :
gmx::InconsistentInputError
increaseWeightSumIteration() :
gmx::PointState
increasing() :
gmx::ExponentialMovingAverage
incrementNumUpdates() :
gmx::HistogramSize
indent() :
gmx::RstParagraphIterator
,
gmx::TextLineWrapperSettings
index() :
gmx::AnalysisDataFrameHeader
,
gmx::test::AnalysisDataTestInputPointSet
,
gmx::test::AnalysisDataTestInputFrame
,
gmx::Site
indexed() :
gmx::AnalysisNeighborhoodPositions
IndexGroupsAndNames() :
gmx::IndexGroupsAndNames
indices() :
gmx::IndexGroupsAndNames
info() :
gmx::internal::OptionSectionImpl
inInitialStage() :
gmx::BiasState
,
gmx::HistogramSize
init() :
gmx::AnalysisDataFrameLocalData< ValueType >
,
gmx::internal::BasicHistogramImpl
,
gmx::AbstractAverageHistogram
,
gmx::AnalysisDataSimpleHistogramModule
,
gmx::AnalysisDataWeightedHistogramModule
,
gmx::AnalysisDataBinAverageModule
,
gmx::CommandLineHelpModule
,
gmx::ICommandLineModule
,
gmx::anonymous_namespace{cmdlinemodulemanager.cpp}::CMainCommandLineModule
,
gmx::ICommandLineOptionsModule
,
gmx::MimicCommunicator
,
gmx::UnionFinder
,
anonymous_namespace{legacymodules.cpp}::ObsoleteToolModule
initAfterFirstFrame() :
gmx::TrajectoryAnalysisModule
,
gmx::analysismodules::anonymous_namespace{rdf.cpp}::Rdf
initAnalysis() :
gmx::TrajectoryAnalysisModule
,
gmx::analysismodules::anonymous_namespace{freevolume.cpp}::FreeVolume
,
gmx::analysismodules::anonymous_namespace{pairdist.cpp}::PairDistance
,
gmx::analysismodules::anonymous_namespace{rdf.cpp}::Rdf
,
gmx::analysismodules::anonymous_namespace{sasa.cpp}::Sasa
,
AnalysisTemplate
initAtoms() :
gmx::test::TopologyManager
initBehavior() :
gmx::IOptionsBehavior
,
gmx::TimeUnitBehavior
,
gmx::SelectionOptionBehavior
initConverter() :
gmx::OptionStorageTemplateSimple< T >
initCoveredFraction() :
gmx::internal::SelectionData
,
gmx::Selection
initDevice() :
gmx::GpuTaskAssignments
initEvaluation() :
gmx::PositionCalculationCollection
initFirstFrame() :
gmx::TrajectoryAnalysisRunnerCommon
initForceProviders() :
gmx::anonymous_namespace{densityfitting.cpp}::DensityFitting
,
gmx::anonymous_namespace{electricfield.cpp}::ElectricField
,
gmx::MDModules
,
gmx::IMDModule
,
gmx::RestraintMDModule
,
gmx::RestraintMDModuleImpl
initFrame() :
gmx::PositionCalculationCollection
,
gmx::TrajectoryAnalysisRunnerCommon
initFrameIndexGroup() :
gmx::TrajectoryAnalysisRunnerCommon
initFromArray() :
gmx::test::CommandLine
initGridPointState() :
gmx::BiasState
initHistoryFromState() :
gmx::Awh
,
gmx::Bias
,
gmx::BiasState
initializeAwhOutputFile() :
OutputFile
initialized() :
gmx::test::TestReferenceChecker::Impl
initializeEnergyHistory() :
gmx::EnergyData
initializeFrictionOutputFile() :
OutputFile
initializeMassesAndCharges() :
gmx::internal::SelectionData
initializeMembed() :
gmx::MembedHolder
initManager() :
gmx::test::CommandLineModuleManagerTestBase
initMdpOptions() :
gmx::DensityFittingOptions
,
gmx::anonymous_namespace{electricfield.cpp}::ElectricFieldDimension
,
gmx::anonymous_namespace{electricfield.cpp}::ElectricField
,
gmx::IMdpOptionProvider
initMdpTransform() :
gmx::DensityFittingOptions
,
gmx::anonymous_namespace{electricfield.cpp}::ElectricField
,
gmx::MDModules
,
gmx::IMdpOptionProvider
initMolInfo() :
MoleculeInformation
initOptions() :
gmx::CommandLineCommonOptionsHolder
,
gmx::ICommandLineOptionsModule
,
gmx::OutputRequirementOptionDirector
,
gmx::SelectionCollection
,
gmx::SelectionOptionBehavior
,
gmx::SelectionOptionManager
,
gmx::TrajectoryAnalysisModule
,
gmx::analysismodules::anonymous_namespace{freevolume.cpp}::FreeVolume
,
gmx::analysismodules::anonymous_namespace{pairdist.cpp}::PairDistance
,
gmx::analysismodules::anonymous_namespace{rdf.cpp}::Rdf
,
gmx::analysismodules::anonymous_namespace{sasa.cpp}::Sasa
,
gmx::TrajectoryAnalysisRunnerCommon
,
gmx::test::anonymous_namespace{testoptions.cpp}::TestOptionsRegistry
,
gmx::test::TestOptionsProvider
,
AnalysisTemplate
,
gmx::AnalysisDataPlotSettings
initOriginalIdsToGroup() :
gmx::Selection
initOutput() :
gmx::DensityFittingOutputProvider
,
gmx::anonymous_namespace{electricfield.cpp}::ElectricField
,
gmx::IMDOutputProvider
initPairlistSets() :
nonbonded_verlet_t
initRefCountArray() :
gmx::analysismodules::anonymous_namespace{pairdist.cpp}::PairDistanceModuleData
initSearch() :
gmx::AnalysisNeighborhood
initStorage() :
gmx::RepeatingOptionSectionStorage< T >
,
gmx::IOptionSectionStorage
initTopology() :
gmx::test::TopologyManager
,
gmx::TrajectoryAnalysisRunnerCommon
initWithGroupIndices() :
gmx::MappedUnionFinder
inputFile() :
gmx::FileNameOption
inputOutputFile() :
gmx::FileNameOption
inputStream() :
gmx::test::InteractiveTestHelper
inSection() :
gmx::OptionsAssigner::Impl
insert() :
gmx_ga2la_t
,
gmx::HashedMap< T >
insert_or_assign() :
gmx::HashedMap< T >
insertCalculation() :
gmx::PositionCalculationCollection::Impl
insertNonlocalGpuDependency() :
nonbonded_verlet_t
installationPrefix() :
gmx::test::anonymous_namespace{testinit.cpp}::TestProgramContext
,
gmx::CommandLineProgramContext
,
gmx::anonymous_namespace{programcontext.cpp}::DefaultProgramContext
,
gmx::IProgramContext
InstallationPrefixInfo() :
gmx::InstallationPrefixInfo
Int64Option() :
gmx::Int64Option
Int64OptionInfo() :
gmx::Int64OptionInfo
Int64OptionStorage() :
gmx::Int64OptionStorage
inTargetRegion() :
gmx::PointState
integerBins() :
gmx::AnalysisHistogramSettingsInitializer
IntegerBox() :
gmx::IntegerBox
IntegerOption() :
gmx::IntegerOption
IntegerOptionInfo() :
gmx::IntegerOptionInfo
IntegerOptionStorage() :
gmx::IntegerOptionStorage
integrate() :
gmx::UpdateConstrainGpu::Impl
interactionIndex() :
VsiteAtomMapping
InteractionOfType() :
InteractionOfType
interactionSelectionAll() :
ListedForces
InteractiveMD() :
gmx::InteractiveMD
InteractiveTestHelper() :
gmx::test::InteractiveTestHelper
InternalError() :
gmx::InternalError
InvalidInputError() :
gmx::InvalidInputError
inverseTimeConstant() :
gmx::ExponentialMovingAverage
inverseTimeScaleFactor() :
gmx::TimeUnitManager
IonSwapping() :
gmx::IonSwapping
IOutputAdapter() :
gmx::IOutputAdapter
is_always_contiguous() :
gmx::basic_mdspan< ElementType, Extents, LayoutPolicy, AccessorPolicy >
,
gmx::layout_right::mapping< Extents >
is_always_strided() :
gmx::layout_right::mapping< Extents >
,
gmx::basic_mdspan< ElementType, Extents, LayoutPolicy, AccessorPolicy >
is_always_unique() :
gmx::basic_mdspan< ElementType, Extents, LayoutPolicy, AccessorPolicy >
,
gmx::layout_right::mapping< Extents >
is_contiguous() :
gmx::layout_right::mapping< Extents >
,
gmx::basic_mdspan< ElementType, Extents, LayoutPolicy, AccessorPolicy >
is_strided() :
gmx::layout_right::mapping< Extents >
,
gmx::basic_mdspan< ElementType, Extents, LayoutPolicy, AccessorPolicy >
is_unique() :
gmx::layout_right::mapping< Extents >
,
gmx::basic_mdspan< ElementType, Extents, LayoutPolicy, AccessorPolicy >
isAllocated() :
gmx::AbstractAnalysisArrayData
isAtRootTopic() :
gmx::HelpManager::Impl
isAvailable() :
gmx::internal::AnalysisDataStorageFrameData
isBoolean() :
gmx::AbstractOptionStorage
isCheckCoveringStep() :
gmx::BiasParams
isCheckHistogramForAnomaliesStep() :
gmx::BiasParams
isCheckpointingStep() :
gmx::CheckpointHandler
isCompletionExport() :
gmx::CommandLineHelpContext
isContext() :
gmx::anonymous_namespace{exceptions.cpp}::ErrorMessage
isCoveredFractionDynamic() :
gmx::internal::SelectionData
,
gmx::Selection
isDirectoryOption() :
gmx::FileNameOptionStorage
,
gmx::FileNameOptionInfo
isDouble() :
gmx::test::FloatingPointDifference
isDynamic() :
gmx::internal::SelectionData
,
gmx::analysismodules::anonymous_namespace{angle.cpp}::AnglePositionIterator
,
gmx::Selection
isDynamicPruningStepCpu() :
PairlistSets
,
nonbonded_verlet_t
isDynamicPruningStepGpu() :
PairlistSets
,
nonbonded_verlet_t
isEmpty() :
gmx::OutputAdapterContainer
,
gmx::Any
,
gmx::MessageStringCollector
isEnumerated() :
gmx::StringOptionInfo
isFepLambdaAxis() :
gmx::GridAxis
isFepLambdaDimension() :
gmx::DimParams
isFileOpen() :
gmx::AbstractPlotModule
isFinished() :
gmx::internal::AnalysisDataStorageFrameData
isHidden() :
gmx::AbstractOptionStorage
,
gmx::OptionInfo
isInitialized() :
gmx::AnalysisDataFrameLocalData< ValueType >
,
gmx::TrajectoryAnalysisModuleData::Impl
isInputCompatible() :
gmx::ModularSimulator
isInputFile() :
gmx::FileNameOptionStorage
,
gmx::FileNameOptionInfo
isInputOutputFile() :
gmx::FileNameOptionInfo
,
gmx::FileNameOptionStorage
isInRange() :
gmx::Range< typename >
isInteractive() :
gmx::StandardInputStream
isLibraryFile() :
gmx::FileNameOptionInfo
,
gmx::FileNameOptionStorage
isMultipoint() :
gmx::AbstractAnalysisData
,
gmx::test::AnalysisDataTestInput
,
gmx::internal::AnalysisDataStorageImpl
isNaN() :
gmx::test::FloatingPointDifference
isNotified() :
gmx::internal::AnalysisDataStorageFrameData
isNumCoupledConstraintsSupported() :
gmx::UpdateConstrainGpu::Impl
isOutputFile() :
gmx::FileNameOptionStorage
,
gmx::FileNameOptionInfo
isPeriodic() :
gmx::GridAxis
isPresent() :
gmx::AnalysisDataValue
isPullDimension() :
gmx::DimParams
isRequired() :
gmx::OptionInfo
,
gmx::AbstractOptionStorage
isSampleCoordStep() :
gmx::Bias
,
gmx::BiasParams
isSet() :
gmx::AnalysisDataValue
,
gmx::AbstractOptionStorage
,
gmx::OptionInfo
,
PreprocessingBondAtomType
,
PreprocessingAtomTypes
isStarted() :
gmx::internal::AnalysisDataStorageFrameData
issueFatalError() :
gmx::ImdSession::Impl
isThisSystem() :
gmx::HardwareTopology
isTime() :
gmx::DoubleOptionInfo
,
gmx::FloatOptionStorage
,
gmx::DoubleOptionStorage
,
gmx::FloatOptionInfo
isTrajectoryOption() :
gmx::FileNameOptionInfo
,
gmx::FileNameOptionStorage
isTrivial() :
gmx::TextLineWrapper
isType() :
gmx::OptionInfo
,
gmx::Any
isUpdateFreeEnergyStep() :
gmx::BiasParams
isUpdateTargetStep() :
gmx::BiasParams
isValid() :
gmx::Selection
,
gmx::AnalysisNeighborhoodPair
,
DeviceStream
,
gmx::test::TestReferenceChecker
,
gmx::AnalysisDataFrameHeader
,
gmx::AnalysisDataHandle
,
gmx::AnalysisDataFrameRef
isValidType() :
gmx::FileNameOptionStorage
,
gmx::FileNameOptionInfo
,
gmx::anonymous_namespace{filenameoption.cpp}::FileTypeHandler
isVector() :
gmx::AbstractOption
,
gmx::AbstractOptionStorage
isWithin() :
gmx::AnalysisNeighborhoodSearch
,
gmx::test::FloatingPointTolerance
iterator() :
gmx::Range< typename >::iterator
Generated on Wed Nov 11 2020 11:11:50 for Gromacs by
1.8.5