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- s -
s :
BondedInteraction
,
em_state
,
gmx_ana_selvalue_t
s_defaultTrajectoryTolerances :
gmx::test::TrajectoryComparison
s_globalOutputTempDirectory :
gmx::test::TestFileManager::Impl
s_inputDirectory :
gmx::test::TestFileManager::Impl
s_nPoints :
gmx::test::SimdBaseTest
s_simulationDatabaseDirectory :
gmx::test::TestFileManager::Impl
s_workMemSize_ :
gmx::test::anonymous_namespace{simd_floatingpoint_util.cpp}::SimdFloatingpointUtilTest
sbase :
gmx_ana_poscalc_t
sblock :
gmx::shakedata
sc :
gmx_sel_lexer_t
sc_ :
gmx::SelectionCollection::Impl
scale :
PmeGpuDynamicParams
scaled_lagrange_multiplier :
gmx::shakedata
sci :
Nbnxm::gpu_plist
,
nbnxn_sci
sci_nalloc :
Nbnxm::gpu_plist
searchCount_ :
SearchCycleCounting
sectionDepth_ :
gmx::HelpWriterContext::Impl
sectionStack_ :
gmx::OptionsAssigner::Impl
seed :
gmx_repl_ex
seed_ :
gmx::test::BiasTest
,
gmx::test::BiasFepLambdaStateTest
sel :
gmx_ana_selcollection_t
selections_ :
gmx::TrajectoryAnalysisModuleData::Impl
sendAtom :
gmx_domdec_specat_comm_t
sendxbuf :
gmx::ImdSession::Impl
seqIndex_ :
gmx::test::TestReferenceChecker::Impl
sessionPossible :
gmx::ImdSession::Impl
set :
gmx::SimulationSignal
set_poscoll :
gmx_ana_selmethod_t
setNumVelocityScalingVariables :
gmx::PropagatorThermostatConnection
settings :
PmeGpu
settings_ :
gmx::internal::BasicHistogramImpl
sh_ewald :
NBParamGpu
,
cl_nbparam_params
sh_lj_ewald :
NBParamGpu
,
cl_nbparam_params
shared :
gmx::HardwareTopology::Cache
sharedMemorySize :
KernelLaunchConfig
shift :
nbnxn_ci_t
,
nbnxn_sci
shift0 :
DDPairInteractionRanges
shift1 :
DDPairInteractionRanges
shift_vec :
nbnxn_atomdata_t
,
cu_atomdata
,
cl_atomdata
shortDescription :
gmx::ConvertTprInfo
,
gmx::NonbondedBenchmarkInfo
sig :
gmx::SimulationSignal
sigma :
t_UmbrellaWindow
sigma3A :
t_mdatoms
sigma3B :
t_mdatoms
sigma_ :
gmx::DensityFittingForce::Impl
,
gmx::GaussTransform3D::Impl
,
gmx::GaussianSpreadKernelParameters::Shape
,
gmx::anonymous_namespace{neldermead.cpp}::NelderMeadParameters
sigmaA :
t_mdatoms
sigmaB :
t_mdatoms
signals_ :
gmx::test::SignalTest
sigSmoothIact :
UmbrellaOptions
simdInternal_ :
gmx::Simd4DBool
,
gmx::Simd4Float
,
gmx::Simd4FBool
,
gmx::SimdDouble
,
gmx::SimdDInt32
,
gmx::SimdDBool
,
gmx::SimdDIBool
,
gmx::SimdFloat
,
gmx::SimdFInt32
,
gmx::SimdFBool
,
gmx::SimdFIBool
,
gmx::Simd4Double
simdIntWidth :
ScalarDataTypes
,
SimdDataTypes
simdMasks :
nbnxn_atomdata_t
simdRealWidth :
ScalarDataTypes
,
SimdDataTypes
similarityMeasureMethod_ :
gmx::DensityFittingParameters
simulation_part :
CheckpointHeaderContents
simulationComm_ :
gmx_multisim_t
simulationCommunicator_ :
gmx::SimulationContext
simulationIndex_ :
gmx_multisim_t
simulationSetupNotifications_ :
gmx::MdModulesNotifier
singleModule_ :
gmx::CommandLineModuleManager::Impl
size :
gmx::HardwareTopology::Cache
,
gmx_sel_mempool_block_t
size_ :
gmx::PhysicalNodeCommunicator
,
gmx::test::MultiSimTest
sizeOfTprBody :
TpxFileHeader
skewData_ :
gmx::MrcDensityMapHeader
slab_buffer :
gmx_enfrotgrp
slab_center :
gmx_enfrotgrp
slab_center_ref :
gmx_enfrotgrp
slab_data :
gmx_enfrotgrp
slab_first :
gmx_enfrotgrp
slab_first_ref :
gmx_enfrotgrp
slab_innersumvec :
gmx_enfrotgrp
slab_last :
gmx_enfrotgrp
slab_last_ref :
gmx_enfrotgrp
slab_torque_v :
gmx_enfrotgrp
slab_weights :
gmx_enfrotgrp
socket :
gmx::ImdSession::Impl
socketRankInMachine :
gmx::CpuInfo::LogicalProcessor
,
gmx::HardwareTopology::LogicalProcessor
sockets :
gmx::HardwareTopology::Machine
solveMaxWorkGroupSize :
PmeGpuProgramImpl
sortBuffer :
Nbnxm::GridWork
,
PairsearchWork
source_ :
gmx::test::MockAnalysisDataModule::Impl
spaceGroup_ :
gmx::MrcDensityMapHeader
spacing :
pme_setup_t
,
gmx::NumericalSplineTableInput
span :
methoddata_insolidangle
spas :
gmx_domdec_specat_comm_t
splineDataByPmeOrder :
gmx::test::anonymous_namespace{pmegathertest.cpp}::AtomSizedData
splineDataSize :
PmeGpuSpecific
splineDataSizeAlloc :
PmeGpuSpecific
splineDerivatives :
gmx::test::anonymous_namespace{pmegathertest.cpp}::AtomAndPmeOrderSizedData
splineValues :
gmx::test::anonymous_namespace{pmegathertest.cpp}::AtomAndPmeOrderSizedData
splineValuesCapacity :
PmeGpuSpecific
splineValuesOffset :
PmeGpuGridParams
splineValuesSize :
PmeGpuSpecific
spost_ :
gmx::SelectionCollection::Impl
spreadRange_ :
gmx::GaussTransform3D::Impl
spreadTask :
gmx::InterdependentTask
spreadWidthMultiplesOfSigma_ :
gmx::GaussianSpreadKernelParameters::Shape
spreadWorkGroupSize :
PmeGpuProgramImpl
sqrt_c6A :
t_mdatoms
sqrt_c6B :
t_mdatoms
staging :
PmeGpu
start_time_stamp :
gmx_walltime_accounting
startIndex :
gmx::SelectionLocation
startingBehavior :
gmx::anonymous_namespace{handlerestart.cpp}::StartingBehaviorHandler
,
gmx::LegacySimulatorData
startingBehavior_ :
gmx::SimulatorConfig
startTimeValue :
gmx::OutputRequirements
state_ :
gmx::test::anonymous_namespace{energyoutput.cpp}::EnergyOutputTest
,
gmx::HelpWriterContext::Impl
,
gmx::AnalysisDataModuleManager::Impl
state_global :
gmx::LegacySimulatorData
stateChanged :
gmx::StepWorkload
status :
DeviceInformation
statusWriter :
gmx_sel_lexer_t
step :
gmx::test::anonymous_namespace{freeenergyparameters.cpp}::FreeEnergyParameterTestParameters
,
CheckpointHeaderContents
,
gmx_pme_comm_n_box_t
stepchange :
UmbrellaOptions
stepFactor :
gmx::MtsLevel
stepsSinceLastCalculation_ :
gmx::DensityFittingForceProviderState
stepsSinceLastCalculationName_ :
gmx::DensityFittingForceProviderState
stepUpdateContrib :
UmbrellaOptions
stop_cond :
gmx_pme_comm_vir_ene_t
stopHandlerBuilder :
gmx::LegacySimulatorData
storage_ :
gmx::internal::BasicHistogramImpl
,
gmx::internal::OptionSectionImpl
,
gmx::SelectionOptionManager::Impl::SelectionRequest
,
gmx::AnalysisData::Impl
storageInitialized_ :
gmx::internal::OptionSectionImpl
storageLimit_ :
gmx::internal::AnalysisDataStorageImpl
stpsz :
anonymous_namespace{edsam.cpp}::t_eigvec
str :
gmx::SelectionParserValue
stream_ :
gmx::TextReader::Impl
streams_ :
gmx::DeviceStreamManager::Impl
stride :
methoddata_merge
subgroups_ :
gmx::internal::OptionSectionImpl::Group
subsections_ :
gmx::internal::OptionSectionImpl
subTopicMap_ :
gmx::AbstractCompositeHelpTopic::Impl
subTopics_ :
gmx::AbstractCompositeHelpTopic::Impl
sum_dg :
df_history_t
sum_minvar :
df_history_t
sum_variance :
df_history_t
sum_weights :
df_history_t
sumOverBlocksBlockWeightBlockWeightX :
gmx::CorrelationBlockData::CoordData
sumSquaredDeviation :
gmx::LincsDeviations
surfaceDist2_ :
gmx::analysismodules::anonymous_namespace{rdf.cpp}::RdfModuleData
svir_prev :
t_state
swap :
gmx::LegacySimulatorData
swapdim :
t_swap
swapHistory :
ObservablesHistory
symbols_ :
gmx::SelectionParserSymbolTable::Impl
symtab :
gmx_ana_selcollection_t
syncSpreadGridD2H :
PmeGpuSpecific
syncStep :
nbnxn_atomdata_t
syntax :
gmx_ana_selmethod_help_t
systemInfo_ :
gmx::DomainDecompositionBuilder::Impl
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