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programs → gromacs Relation
File in src/programs
Includes file in src/gromacs
view
/
3dview.cpp
utility
/
fatalerror.h
view
/
3dview.cpp
utility
/
smalloc.h
view
/
3dview.h
utility
/
basedefinitions.h
view
/
3dview.h
utility
/
real.h
view
/
buttons.cpp
utility
/
cstringutil.h
view
/
buttons.cpp
utility
/
smalloc.h
mdrun
/
tests
/
compressed_x_output.cpp
options
/
filenameoption.h
mdrun
/
tests
/
densityfittingmodule.cpp
utility
/
stringutil.h
view
/
dialogs.cpp
utility
/
arraysize.h
view
/
dialogs.cpp
utility
/
cstringutil.h
view
/
dialogs.cpp
utility
/
dir_separator.h
view
/
dialogs.cpp
utility
/
fatalerror.h
view
/
dialogs.cpp
utility
/
futil.h
view
/
dialogs.cpp
mdtypes
/
md_enums.h
view
/
dialogs.cpp
utility
/
smalloc.h
mdrun
/
tests
/
energycomparison.cpp
utility
/
basenetwork.h
mdrun
/
tests
/
energycomparison.cpp
utility
/
strconvert.h
mdrun
/
tests
/
energycomparison.cpp
utility
/
stringutil.h
mdrun
/
tests
/
energyreader.cpp
utility
/
exceptions.h
mdrun
/
tests
/
energyreader.cpp
utility
/
stringutil.h
mdrun
/
tests
/
energyreader.h
utility
/
classhelpers.h
mdrun
/
tests
/
energyreader.h
utility
/
unique_cptr.h
mdrun
/
tests
/
ewaldsurfaceterm.cpp
utility
/
basenetwork.h
mdrun
/
tests
/
ewaldsurfaceterm.cpp
utility
/
filestream.h
mdrun
/
tests
/
ewaldsurfaceterm.cpp
utility
/
strconvert.h
mdrun
/
tests
/
ewaldsurfaceterm.cpp
utility
/
stringutil.h
mdrun
/
tests
/
exactcontinuation.cpp
utility
/
stringutil.h
view
/
fgrid.cpp
utility
/
cstringutil.h
view
/
fgrid.cpp
utility
/
futil.h
view
/
fgrid.cpp
utility
/
smalloc.h
view
/
filter.cpp
utility
/
cstringutil.h
view
/
filter.cpp
utility
/
dir_separator.h
view
/
filter.cpp
utility
/
fatalerror.h
view
/
filter.cpp
utility
/
futil.h
view
/
filter.cpp
utility
/
smalloc.h
mdrun
/
tests
/
freeenergy.cpp
utility
/
filestream.h
mdrun
/
tests
/
freeenergy.cpp
utility
/
path.h
mdrun
/
tests
/
freeenergy.cpp
utility
/
stringutil.h
gmx.cpp
commandline
/
cmdlineinit.h
gmx.cpp
commandline
/
cmdlinemodulemanager.h
gmx.cpp
utility
/
exceptions.h
gmx.cpp
trajectoryanalysis
/
modules.h
gmx.cpp
selection
/
selhelp.h
mdrun
/
tests
/
helpwriting.cpp
commandline
/
cmdlinehelpcontext.h
mdrun
/
tests
/
helpwriting.cpp
utility
/
stringstream.h
mdrun
/
tests
/
helpwriting.cpp
utility
/
textwriter.h
mdrun
/
tests
/
initialconstraints.cpp
utility
/
stringutil.h
mdrun
/
tests
/
interactiveMD.cpp
utility
/
stringutil.h
legacymodules.cpp
commandline
/
cmdlinemodule.h
legacymodules.cpp
commandline
/
cmdlinemodulemanager.h
legacymodules.cpp
commandline
/
cmdlineoptionsmodule.h
view
/
logo.cpp
utility
/
arraysize.h
view
/
logo.cpp
utility
/
baseversion.h
view
/
logo.cpp
utility
/
real.h
view
/
logo.cpp
utility
/
smalloc.h
view
/
manager.cpp
utility
/
coolstuff.h
view
/
manager.cpp
utility
/
cstringutil.h
view
/
manager.cpp
utility
/
fatalerror.h
view
/
manager.cpp
utility
/
futil.h
view
/
manager.cpp
mdtypes
/
md_enums.h
view
/
manager.cpp
utility
/
smalloc.h
view
/
manager.cpp
utility
/
stringutil.h
view
/
manager.h
utility
/
real.h
mdrun
/
mdrun.cpp
utility
/
arrayref.h
mdrun
/
mdrun.cpp
utility
/
basenetwork.h
mdrun
/
mdrun.cpp
mdrunutility
/
handlerestart.h
mdrun
/
mdrun.cpp
mdrun
/
legacymdrunoptions.h
mdrun
/
mdrun.cpp
mdrunutility
/
logging.h
mdrun
/
mdrun.cpp
mdrunutility
/
multisim.h
mdrun
/
mdrun.cpp
domdec
/
options.h
mdrun
/
mdrun.cpp
commandline
/
pargs.h
mdrun
/
mdrun.cpp
utility
/
physicalnodecommunicator.h
mdrun
/
mdrun.cpp
mdrun
/
runner.h
mdrun
/
mdrun.cpp
mdrun
/
simulationcontext.h
mdrun_main.cpp
commandline
/
cmdlinemodule.h
mdrun_main.cpp
commandline
/
cmdlinemodulemanager.h
mdrun
/
mdrun_main.h
utility
/
gmxmpi.h
mdrun
/
tests
/
mimic.cpp
utility
/
basenetwork.h
mdrun
/
tests
/
mimic.cpp
utility
/
stringutil.h
mdrun
/
tests
/
minimize.cpp
utility
/
basenetwork.h
mdrun
/
tests
/
minimize.cpp
options
/
filenameoption.h
mdrun
/
tests
/
minimize.cpp
utility
/
stringutil.h
mdrun
/
tests
/
moduletest.cpp
utility
/
basedefinitions.h
mdrun
/
tests
/
moduletest.cpp
utility
/
basenetwork.h
mdrun
/
tests
/
moduletest.cpp
options
/
basicoptions.h
mdrun
/
tests
/
moduletest.cpp
utility
/
gmxmpi.h
mdrun
/
tests
/
moduletest.cpp
options
/
ioptionscontainer.h
mdrun
/
tests
/
moduletest.cpp
utility
/
physicalnodecommunicator.h
mdrun
/
tests
/
moduletest.cpp
utility
/
textwriter.h
mdrun
/
tests
/
moduletest.h
utility
/
classhelpers.h
mdrun
/
tests
/
moduletest.h
utility
/
gmxmpi.h
view
/
molps.cpp
utility
/
smalloc.h
mdrun
/
tests
/
multiple_time_stepping.cpp
utility
/
stringutil.h
mdrun
/
tests
/
multisimtest.cpp
utility
/
basenetwork.h
mdrun
/
tests
/
multisimtest.cpp
utility
/
path.h
mdrun
/
tests
/
multisimtest.cpp
utility
/
real.h
mdrun
/
tests
/
multisimtest.cpp
utility
/
stringutil.h
view
/
nleg.cpp
utility
/
arraysize.h
view
/
nleg.cpp
utility
/
smalloc.h
view
/
nmol.cpp
utility
/
fatalerror.h
view
/
nmol.cpp
utility
/
smalloc.h
mdrun
/
nonbonded_bench.cpp
utility
/
arraysize.h
mdrun
/
nonbonded_bench.cpp
options
/
basicoptions.h
mdrun
/
nonbonded_bench.cpp
nbnxm
/
benchmark
/
bench_setup.h
mdrun
/
nonbonded_bench.cpp
commandline
/
cmdlineoptionsmodule.h
mdrun
/
nonbonded_bench.cpp
utility
/
enumerationhelpers.h
mdrun
/
nonbonded_bench.cpp
ewald
/
ewald_utils.h
mdrun
/
nonbonded_bench.cpp
options
/
filenameoption.h
mdrun
/
nonbonded_bench.cpp
options
/
ioptionscontainer.h
mdrun
/
nonbonded_bench.cpp
selection
/
selectionoptionbehavior.h
mdrun
/
tests
/
nonbonded_bench.cpp
utility
/
stringutil.h
mdrun
/
tests
/
nonbonded_bench.cpp
utility
/
textreader.h
mdrun
/
nonbonded_bench.h
commandline
/
cmdlineoptionsmodule.h
mdrun
/
tests
/
normalmodes.cpp
utility
/
basenetwork.h
mdrun
/
tests
/
normalmodes.cpp
options
/
filenameoption.h
mdrun
/
tests
/
normalmodes.cpp
utility
/
filestream.h
mdrun
/
tests
/
normalmodes.cpp
utility
/
stringutil.h
mdrun
/
tests
/
outputfiles.cpp
utility
/
path.h
mdrun
/
tests
/
outputfiles.cpp
utility
/
stringutil.h
mdrun
/
tests
/
periodicactions.cpp
utility
/
strconvert.h
mdrun
/
tests
/
periodicactions.cpp
utility
/
stringutil.h
mdrun
/
tests
/
pmetest.cpp
utility
/
cstringutil.h
mdrun
/
tests
/
pmetest.cpp
hardware
/
device_management.h
mdrun
/
tests
/
pmetest.cpp
utility
/
gmxmpi.h
mdrun
/
tests
/
pmetest.cpp
utility
/
physicalnodecommunicator.h
mdrun
/
tests
/
pmetest.cpp
ewald
/
pme.h
mdrun
/
tests
/
pmetest.cpp
utility
/
stringutil.h
view
/
popup.cpp
utility
/
smalloc.h
view
/
pulldown.cpp
utility
/
smalloc.h
mdrun
/
tests
/
replicaexchange.cpp
utility
/
path.h
mdrun
/
tests
/
replicaexchange.cpp
utility
/
stringutil.h
mdrun
/
tests
/
rerun.cpp
utility
/
stringutil.h
mdrun
/
tests
/
simple_mdrun.cpp
utility
/
basenetwork.h
mdrun
/
tests
/
simple_mdrun.cpp
options
/
filenameoption.h
mdrun
/
tests
/
simple_mdrun.cpp
utility
/
filestream.h
mdrun
/
tests
/
simple_mdrun.cpp
utility
/
strconvert.h
mdrun
/
tests
/
simple_mdrun.cpp
utility
/
stringutil.h
mdrun
/
tests
/
simulator.cpp
utility
/
stringutil.h
mdrun
/
tests
/
tabulated_bonded_interactions.cpp
utility
/
stringutil.h
mdrun
/
tests
/
tabulated_bonded_interactions.cpp
utility
/
textwriter.h
mdrun
/
tests
/
termination.cpp
utility
/
path.h
mdrun
/
tests
/
termination.cpp
utility
/
stringutil.h
mdrun
/
tests
/
termination.cpp
utility
/
textreader.h
mdrun
/
tests
/
terminationhelper.cpp
utility
/
path.h
mdrun
/
tests
/
tpitest.cpp
utility
/
stringutil.h
mdrun
/
tests
/
tpitest.cpp
utility
/
textreader.h
mdrun
/
tests
/
trajectory_writing.cpp
options
/
filenameoption.h
mdrun
/
tests
/
trajectory_writing.cpp
utility
/
stringutil.h
mdrun
/
tests
/
trajectorycomparison.cpp
utility
/
strconvert.h
mdrun
/
tests
/
trajectoryreader.cpp
utility
/
exceptions.h
mdrun
/
tests
/
trajectoryreader.h
utility
/
classhelpers.h
mdrun
/
tests
/
trajectoryreader.h
utility
/
unique_cptr.h
view
/
view.cpp
utility
/
arraysize.h
view
/
view.cpp
utility
/
coolstuff.h
view
/
view.cpp
utility
/
fatalerror.h
view
/
view.cpp
commandline
/
pargs.h
view
/
view.cpp
utility
/
smalloc.h
view
/
x11.cpp
utility
/
cstringutil.h
view
/
x11.cpp
utility
/
smalloc.h
view
/
xdlg.cpp
utility
/
cstringutil.h
view
/
xdlg.cpp
utility
/
fatalerror.h
view
/
xdlg.cpp
utility
/
smalloc.h
view
/
xdlghi.cpp
utility
/
cstringutil.h
view
/
xdlghi.cpp
utility
/
fatalerror.h
view
/
xdlghi.cpp
utility
/
smalloc.h
view
/
xdlgitem.cpp
utility
/
cstringutil.h
view
/
xdlgitem.cpp
utility
/
fatalerror.h
view
/
xdlgitem.cpp
utility
/
smalloc.h
view
/
xmb.cpp
utility
/
fatalerror.h
view
/
xutil.cpp
utility
/
cstringutil.h
view
/
xutil.cpp
utility
/
smalloc.h
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