Here is a list of all documented class members with links to the class documentation for each member:

- c -

• c : t_pargs
• c1 : t_xpmelmt
• c2 : t_xpmelmt
• c_labelSize : gmx::CrystallographicLabels
• cACC : t_mdatoms
• caches : gmx::HardwareTopology::Machine
• calculate() : ListedForces
• calculateForces() : gmx::IForceProvider , gmx::ForceProviders
• capacity() : gmx::ArrayRef< typename >
• cast() : gmx::Any
• castRef() : gmx::Any
• cell : gmx_ga2la_t::Entry
• cellAngles_ : gmx::MrcDensityMapHeader
• cellLength_ : gmx::MrcDensityMapHeader
• cellSize : Nbnxm::Grid::Dimensions
• cellSizeX : gmx::DomdecOptions
• cellSizeY : gmx::DomdecOptions
• cellSizeZ : gmx::DomdecOptions
• cENER : t_mdatoms
• centerOfMass() : gmx::Site
• cFREEZE : t_mdatoms
• cg_gl : t_state
• cg_p : t_state
• cgnr : PreprocessResidue , MoleculePatch
• changePairlistRadii() : nonbonded_verlet_t , PairlistSets
• charge() : gmx::SelectionPosition
• chargeA : t_mdatoms
• chargeB : t_mdatoms
• charges : gmx::BenchmarkSystem , gmx::Selection
• checkAbilityDependencies() : gmx::IOutputAdapter , gmx::OutputSelector , gmx::SetAtoms , gmx::SetBox , gmx::SetForces , gmx::SetPrecision , gmx::SetStartTime , gmx::SetTimeStep , gmx::SetVelocities
• checkAny() : gmx::test::TestReferenceChecker
• checkBondedInteractions : gmx::DomdecOptions
• checkBoolean() : gmx::test::TestReferenceChecker
• checkCompound() : gmx::test::TestReferenceChecker
• checkDouble() : gmx::test::TestReferenceChecker
• checkEmptySequence() : gmx::test::TestReferenceChecker
• checker() : gmx::test::StringTestBase
• checkFile() : gmx::test::IFileMatcher
• checkFileContents() : gmx::test::StringTestBase
• checkFloat() : gmx::test::TestReferenceChecker
• checkInt32() : gmx::test::TestReferenceChecker
• checkInt64() : gmx::test::TestReferenceChecker
• checkInteger() : gmx::test::TestReferenceChecker
• checkKeyValueTreeObject() : gmx::test::TestReferenceChecker
• checkKeyValueTreeValue() : gmx::test::TestReferenceChecker
• checkOutputFiles() : gmx::test::CommandLineTestHelper , gmx::test::CommandLineTestBase
• checkpointData() : gmx::ReadCheckpointDataHolder , gmx::WriteCheckpointDataHolder
• checkpointedData_ : gmx::MdModulesCheckpointReadingDataOnMaster
• CheckpointError() : gmx::CheckpointError
• checkpointFileVersion_ : gmx::MdModulesCheckpointReadingDataOnMaster , gmx::MdModulesCheckpointReadingBroadcast , gmx::MdModulesWriteCheckpointData
• CheckpointHandler() : gmx::CheckpointHandler
• checkpointingNotifications_ : gmx::MdModulesNotifier
• checkPresent() : gmx::test::TestReferenceChecker
• checkReal() : gmx::test::TestReferenceChecker
• checkRealFromString() : gmx::test::TestReferenceChecker
• checkRedirectedFiles() : gmx::test::TestFileOutputRedirector
• checkSequence() : gmx::test::TestReferenceChecker
• checkSequenceArray() : gmx::test::TestReferenceChecker
• checkSequenceCompound() : gmx::test::TestReferenceChecker
• checkSession() : gmx::test::InteractiveTestHelper
• checkStream() : gmx::test::ITextBlockMatcher
• checkString() : gmx::test::TestReferenceChecker
• checkText() : gmx::test::StringTestBase
• checkTextBlock() : gmx::test::TestReferenceChecker
• checkUChar() : gmx::test::TestReferenceChecker
• checkUInt32() : gmx::test::TestReferenceChecker
• checkUInt64() : gmx::test::TestReferenceChecker
• checkUnusedEntries() : gmx::test::TestReferenceChecker
• checkValue() : gmx::test::TestReferenceChecker
• checkVector() : gmx::test::TestReferenceChecker
• ci : NbnxnPairlistCpu
• ciOuter : NbnxnPairlistCpu
• cj : nbnxn_cj_t , nbnxn_cj4_t , NbnxnPairlistCpu , NbnxnPairlistCpuWork
• cj4_ind_end : nbnxn_sci
• cj4_ind_start : nbnxn_sci
• cj_ind : NbnxnPairlistCpuWork
• cjOuter : NbnxnPairlistCpu
• classId : gmx::HardwareTopology::Device
• clear() : gmx::RestraintManager , gmx::RangePartitioning , gmx::FixedCapacityVector< T, capacity > , gmx::FlagsTemplate< FlagType > , gmx::ListOfLists< typename > , gmx::MessageStringCollector , gmx::AnalysisDataValue , gmx_ga2la_t , gmx::HashedMap< T > , gmx::PaddedVector< T, Allocator > , gmx::UpdateGroupsCog , gmx::TextTableFormatter
• clearAll() : gmx::FlagsTemplate< FlagType >
• clearAndResizeHashTable() : gmx::HashedMap< T >
• clearFlag() : gmx::AbstractOption , gmx::AbstractOptionStorage
• clearSet() : gmx::AbstractOptionStorage , gmx::OptionStorageTemplate< T >
• ClfftInitializer() : gmx::ClfftInitializer
• ClHandle() : gmx::ClHandle< cl_type >
• clone() : gmx::AbstractAverageHistogram
• cloneOnSpawnedThread() : gmx::Mdrunner
• close() : gmx::StandardInputStream , gmx::TextInputFile , gmx::TextOutputFile , gmx::StringOutputStream , gmx::StringInputStream , gmx::TextReader , gmx::TextInputStream , gmx::TextOutputStream , gmx::TextWriter
• closeAfterForceComputationCpu() : DDBalanceRegionHandler
• closeAfterForceComputationGpu() : DDBalanceRegionHandler
• closeTimingRegion() : GpuRegionTimerWrapper< GpuRegionTimerImpl > , GpuRegionTimerImpl
• CMainFunction : gmx::CommandLineModuleManager
• cmakeGridSpacing : InteractionsOfType
• cmap : InteractionsOfType
• cmap_grid : gmx_ffparams_t
• cmapAngles : InteractionsOfType
• cmapAtomTypes : InteractionsOfType
• code : t_mapping
• cog() : gmx::UpdateGroupsCog
• cogForAtom() : gmx::UpdateGroupsCog
• cogIndex() : gmx::UpdateGroupsCog
• collectiveIndex() : gmx::LocalAtomSet
• columnCount() : gmx::test::AnalysisDataTestInput , gmx::AbstractAnalysisData , gmx::AnalysisDataPointSetRef , gmx::AnalysisDataStorageFrame
• columnRowSectionStart_ : gmx::MrcDensityMapHeader
• columnRowSectionToXyz_ : gmx::MrcDensityMapHeader
• comm_ : gmx::PhysicalNodeCommunicator
• CommandLine() : gmx::test::CommandLine
• commandLine() : gmx::IProgramContext , gmx::test::CommandLineTestBase , gmx::CommandLineProgramContext
• CommandLineHelpContext() : gmx::CommandLineHelpContext
• CommandLineHelpWriter() : gmx::CommandLineHelpWriter
• CommandLineModuleManager() : gmx::CommandLineModuleManager
• CommandLineParser() : gmx::CommandLineParser
• CommandLineProgramContext() : gmx::CommandLineProgramContext
• CommandLineTestHelper() : gmx::test::CommandLineTestHelper
• commGuard_ : gmx::PhysicalNodeCommunicator
• commitValues() : gmx::OptionStorageTemplate< T >
• commRec_ : gmx::SimulatorEnv
• communicateHaloCoordinates() : gmx::GpuHaloExchange
• communicateHaloForces() : gmx::GpuHaloExchange
• communicator_ : gmx::MdModulesCheckpointReadingBroadcast
• compile() : gmx::SelectionCollection
• completeDefaultFileName() : gmx::FileNameOptionManager
• completeFileName() : gmx::FileNameOptionManager
• compressed_symmetric : gmx_sparsematrix
• computeDhdl : gmx::StepWorkload
• computeEnergy : gmx::StepWorkload
• computeForces : gmx::StepWorkload
• computeListedForces : gmx::StepWorkload
• computeMuTot : gmx::SimulationWorkload
• computeNonbonded : gmx::SimulationWorkload
• computeNonbondedAtMtsLevel1 : gmx::SimulationWorkload
• computeNonbondedForces : gmx::StepWorkload
• computeSlowForces : gmx::StepWorkload
• computeVirial() : gmx::ForceWithShiftForces , gmx::StepWorkload
• computeVirial_ : gmx::ForceWithVirial
• const_iterator : gmx::ArrayRefWithPadding< typename > , gmx::ArrayRef< typename > , gmx::MultiDimArray< TContainer, Extents, LayoutPolicy > , gmx::FixedCapacityVector< T, capacity >
• const_pointer : gmx::FixedCapacityVector< T, capacity > , gmx::ArrayRefWithPadding< typename > , gmx::ArrayRef< typename >
• const_reference : gmx::ArrayRef< typename > , gmx::FixedCapacityVector< T, capacity > , gmx::MultiDimArray< TContainer, Extents, LayoutPolicy >
• const_reverse_iterator : gmx::ArrayRef< typename > , gmx::FixedCapacityVector< T, capacity >
• const_view_type : gmx::MultiDimArray< TContainer, Extents, LayoutPolicy >
• constArrayRefFromArray() : gmx::ArrayRef< typename >
• constArrayRefWithPadding() : gmx::ArrayRefWithPadding< typename > , gmx::PaddedVector< T, Allocator >
• constr : gmx::ConstraintsParam
• constraint_distance_squared : gmx::shakedata
• constraintCommunicationRange : gmx::DomdecOptions
• ConstraintsParam() : gmx::ConstraintsParam
• construct() : gmx::DefaultInitializationAllocator< T, A > , gmx::VirtualSitesHandler , PairlistSets , gmx::DefaultInitializationAllocator< T, A >
• constructPairlist() : nonbonded_verlet_t
• constView() : gmx::GaussTransform3D , gmx::MrcDensityMapOfFloatReader
• contains() : gmx::test::CommandLine
• context() : gmx::DeviceStreamManager
• convert() : gmx::OptionValueConverterSimple< OutType >
• convertCoordinates() : nonbonded_verlet_t
• convertCoordinatesGpu() : nonbonded_verlet_t
• ConverterType : gmx::OptionStorageTemplateSimple< T >
• convertOptionValue() : gmx::SelectionOptionManager
• convertValue() : gmx::OptionStorageTemplate< T > , gmx::AbstractOptionStorage
• coordinate_ : gmx::GaussianSpreadKernelParameters::PositionAndAmplitude
• coordinates() : gmx::Selection , gmx::BenchmarkSystem
• copyAtoms() : gmx::TopologyInformation
• copyContents() : gmx::AbstractAnalysisArrayData
• copyright() : gmx::BinaryInformationSettings
• copyToLegacySymtab() : StringTable
• copyTot_atomtypes() : PreprocessingAtomTypes
• coreRankInSocket : gmx::CpuInfo::LogicalProcessor , gmx::HardwareTopology::LogicalProcessor
• cores : gmx::HardwareTopology::Socket
• cORF : t_mdatoms
• count() : nbnxn_cycle_t , gmx_ana_pos_t
• Count : ListedForces
• counter_type : gmx::ThreeFry2x64General< rounds, internalCounterBits >
• countRestraints() : gmx::RestraintManager
• coveredFraction() : gmx::Selection
• cp0 : PairsearchWork , NbnxnPairlistCpu , NbnxnPairlistCpuWork
• cp1 : PairsearchWork , NbnxnPairlistCpuWork , NbnxnPairlistCpu
• cr_ : gmx::ForceProviderInput
• create() : gmx::NonbondedBenchmarkInfo , gmx::ConvertTprInfo , gmx::Any , gmx::DensityFittingModuleInfo , gmx::RestraintMDModule
• createArray() : gmx::KeyValueTreeValueBuilder
• createFileMatcher() : gmx::test::IFileMatcherSettings , gmx::test::TextFileMatch , gmx::test::NoContentsMatch
• createMatcher() : gmx::test::ITextBlockMatcherSettings , gmx::test::ConfMatch , gmx::test::NoTextMatch , gmx::test::FilteringExactTextMatch , gmx::test::XvgMatch , gmx::test::ExactTextMatch
• createModule() : gmx::TrajectoryAnalysisCommandLineRunner , gmx::ICommandLineOptionsModule
• createObject() : gmx::KeyValueTreeValueBuilder
• createStorage() : gmx::AbstractOption , gmx::AbstractOptionSection
• createTrajectoryFrameWriter : gmx::TrajectoryFrameWriter
• cross() : gmx::BasicVector< ValueType >
• csv : gmx::BenchmarkSystem
• cTC : t_mdatoms
• cU1 : t_mdatoms
• cU2 : t_mdatoms
• CubicSplineTable() : gmx::CubicSplineTable
• currentFrame() : gmx::AnalysisDataStorage
• cVCM : t_mdatoms
• cycleCounter : PairsearchWork
• cycleCounting_ : PairSearch