Here is a list of all documented class members with links to the class documentation for each member:
- d -
- d2a
: gmx::analysismodules::anonymous_namespace{sasa.cpp}::t_conect
- d2b
: gmx::analysismodules::anonymous_namespace{sasa.cpp}::t_conect
- d3
: t_bb
- d4
: t_bb
- d5
: t_bb
- d_coefficients
: PmeGpuAtomParams
- d_coordinates
: PmeGpuAtomParams
- d_dtheta
: PmeGpuAtomParams
- d_forces
: PmeGpuAtomParams
- d_fourierGrid
: PmeGpuGridParams
- d_fractShiftsTable
: PmeGpuGridParams
- d_gridlineIndices
: PmeGpuAtomParams
- d_gridlineIndicesTable
: PmeGpuGridParams
- d_realGrid
: PmeGpuGridParams
- d_splineModuli
: PmeGpuGridParams
- d_theta
: PmeGpuAtomParams
- d_virialAndEnergy
: PmeGpuConstParams
- data
: gmx_sparsematrix
, gmx_enfrot
, gmx::AwhEnergyBlock
, gmx::PaddedVector< T, Allocator >
, gmx::basic_mdspan< ElementType, Extents, LayoutPolicy, AccessorPolicy >
, gmx::ArrayRef< typename >
, gmx::EnumerationArray< EnumType, DataType, ArraySize >
, gmx::FixedCapacityVector< T, capacity >
- data_
: gmx::GaussTransform3D::Impl
, anonymous_namespace{indexutil.cpp}::IndexBlockTest
, gmx::internal::AnalysisDataHandleImpl
, gmx::internal::AnalysisDataStorageImpl
, gmx::MrcDensityMapOfFloatReader::Impl
, gmx::MrcDensityMapOfFloatWriter::Impl
- DataFileFinder
: gmx::DataFileOptions
, gmx::DataFileFinder
- DataFileInfo()
: gmx::DataFileInfo
- DataFileOptions()
: gmx::DataFileOptions
- dataFinished()
: gmx::IAnalysisDataModule
, gmx::AnalysisDataModuleSerial
, gmx::AnalysisDataModuleParallel
, gmx::AnalysisDataProxy
, gmx::AnalysisDataAverageModule
, gmx::AnalysisDataFrameAverageModule
, gmx::AnalysisDataDisplacementModule
, gmx::internal::BasicAverageHistogramModule
, gmx::AnalysisDataSimpleHistogramModule
, gmx::AnalysisDataWeightedHistogramModule
, gmx::AnalysisDataBinAverageModule
, gmx::AnalysisDataLifetimeModule
, gmx::AbstractPlotModule
, gmx::analysismodules::anonymous_namespace{select.cpp}::IndexFileWriterModule
- dataHandle()
: gmx::TrajectoryAnalysisModuleData
- dataMode_
: gmx::MrcDensityMapHeader
- DataProperty
: gmx::AnalysisDataModuleManager
- dataPropertyAboutToChange()
: gmx::AnalysisDataModuleManager
- dataSet()
: gmx::AnalysisDataFrameLocalDataHandle< ValueType >
- DatasetContainer
: gmx::TrajectoryAnalysisModule::Impl
- datasetCount()
: gmx::TrajectoryAnalysisModule
- dataSetCount()
: gmx::AbstractAnalysisData
, gmx::AnalysisDataFrameLocalDataHandle< ValueType >
, gmx::test::AnalysisDataTestInput
- datasetFromIndex()
: gmx::TrajectoryAnalysisModule
- datasetFromName()
: gmx::TrajectoryAnalysisModule
- DataSetHandle
: gmx::AnalysisDataFrameLocalDataHandle< ValueType >
, gmx::AnalysisDataFrameLocalData< ValueType >
- dataSetIndex()
: gmx::AnalysisDataPointSetRef
, gmx::test::AnalysisDataTestInputPointSet
- datasetNames()
: gmx::TrajectoryAnalysisModule
- datasetNames_
: gmx::TrajectoryAnalysisModule::Impl
- datasets_
: gmx::TrajectoryAnalysisModule::Impl
- dataStarted()
: gmx::IAnalysisDataModule
, gmx::AnalysisDataModuleSerial
, gmx::AnalysisDataProxy
, gmx::AnalysisDataAverageModule
, gmx::AnalysisDataFrameAverageModule
, gmx::AnalysisDataDisplacementModule
, gmx::internal::BasicAverageHistogramModule
, gmx::AnalysisDataBinAverageModule
, gmx::AnalysisDataLifetimeModule
, gmx::AbstractPlotModule
, gmx::analysismodules::anonymous_namespace{select.cpp}::IndexFileWriterModule
- dataStatistics_
: gmx::MrcDensityMapHeader
- DataStorageRequester()
: gmx::test::anonymous_namespace{mock_datamodule.cpp}::DataStorageRequester
- db
: AtomProperty
- dd_nc
: CheckpointHeaderContents
- DDBalanceRegionHandler()
: DDBalanceRegionHandler
- ddbox_
: gmx::DomainDecompositionBuilder::Impl
- ddBoxIsDynamic
: UnitCellInfo
- ddCellIndex_
: gmx::DomainDecompositionBuilder::Impl
- ddDimensions
: DDGridSetup
- ddGridSetup_
: gmx::DomainDecompositionBuilder::Impl
- ddist
: gmx::Lincs
- ddp_count
: t_state
- ddp_count_cg_gl
: t_state
- ddRankSetup_
: gmx::DomainDecompositionBuilder::Impl
- ddSettings_
: gmx::DomainDecompositionBuilder::Impl
- deallocate()
: gmx::Allocator< T, AllocationPolicy >
- debug
: gmx::MDLogger
- DebugLevel
: gmx::SelectionCollection::Impl
- debugLevel()
: gmx::CommandLineCommonOptionsHolder
- debugLevel_
: gmx::SelectionCollection::Impl
- decay()
: gmx::accessor_basic< ElementType >
- decideIfCheckpointingThisStep()
: gmx::CheckpointHandler
- def
: AtomProperty
- defaultBasename()
: gmx::FileNameOption
- defaultEnergyTermsToCompare()
: gmx::test::EnergyComparison
- defaultEnumIndex()
: gmx::StringOption
- defaultExtension()
: gmx::FileNameOptionInfo
, gmx::FileNameOptionStorage
- defaultFileName_
: gmx::FileNameOptionManager::Impl
- defaultFloatTolerance()
: gmx::test::FloatingPointTolerance
- defaultNiceLevel()
: gmx::CommandLineModuleSettings
- defaultNstImd
: gmx::ImdSession::Impl
- defaultRealTolerance()
: gmx::test::FloatingPointTolerance
- defaultRealUlpTol()
: gmx::test::SimdBaseTest
- defaultSelectionText()
: gmx::SelectionOption
- defaultTolerance
: gmx::CubicSplineTable
, gmx::QuadraticSplineTable
- defaultTolerance_
: gmx::test::TestReferenceChecker::Impl
- defaultType()
: gmx::FileNameOption
- defaultValue()
: gmx::OptionTemplate< T, U >
, gmx::BooleanOptionInfo
, gmx::BooleanOptionStorage
- defaultValueIfSet()
: gmx::OptionTemplate< T, U >
- defaultValueIfSetExists()
: gmx::AbstractOptionStorage
- defaultValues()
: gmx::OptionInfo
, gmx::AbstractOptionStorage
, gmx::OptionStorageTemplate< T >
, gmx::SelectionFileOptionStorage
- defaultValuesAsStrings()
: gmx::OptionInfo
, gmx::AbstractOptionStorage
, gmx::OptionStorageTemplate< T >
, gmx::SelectionFileOptionStorage
- defining_atomnames
: gmx_help_make_index_group
- deform
: gmx::LegacySimulatorData
, gmx::BoxDeformationHandle
, gmx::Update
- degangle
: gmx_potfit
, gmx_enfrotgrp
- dekindl
: ekinstate_t
- delta
: gmx::shakedata
- delta_t
: gmx::SimulationTimeStep
- deltaF
: anonymous_namespace{edsam.cpp}::t_edflood
- deltaF0
: anonymous_namespace{edsam.cpp}::t_edflood
- deltaH()
: ForeignLambdaTerms
- deltaLambda
: gmx::test::anonymous_namespace{freeenergyparameters.cpp}::FreeEnergyParameterTestParameters
- deltaQ
: t_swap
- density
: gmx::DensitySimilarityMeasure
- densityDataCopy()
: gmx::MrcDensityMapOfFloatFromFileReader
- DensityFitting()
: gmx::anonymous_namespace{densityfitting.cpp}::DensityFitting
- DensityFittingAmplitudeLookup()
: gmx::DensityFittingAmplitudeLookup
- DensityFittingForce()
: gmx::DensityFittingForce
- DensityFittingForceProvider()
: gmx::DensityFittingForceProvider
- DensitySimilarityCrossCorrelation()
: gmx::anonymous_namespace{densityfit.cpp}::DensitySimilarityCrossCorrelation
- DensitySimilarityInnerProduct()
: gmx::anonymous_namespace{densityfit.cpp}::DensitySimilarityInnerProduct
- DensitySimilarityMeasure()
: gmx::DensitySimilarityMeasure
- DensitySimilarityRelativeEntropy()
: gmx::anonymous_namespace{densityfit.cpp}::DensitySimilarityRelativeEntropy
- derivative
: gmx::AnalyticalSplineTableInput
, gmx::NumericalSplineTableInput
- desc
: gmx::AnalyticalSplineTableInput
, t_pargs
, t_mapping
, gmx::NumericalSplineTableInput
- DescribeNegationTo()
: gmx::test::FloatTypeMatcher< FloatType >
, gmx::test::RVecMatcher< FloatType >
- DescribeTo()
: gmx::test::FloatTypeMatcher< FloatType >
, gmx::test::RVecMatcher< FloatType >
- description()
: gmx::OptionTemplate< T, U >
, gmx::AbstractOptionStorage
, gmx::SelectionOptionManager::Impl::SelectionRequest
, gmx::test::TestDevice
- deserialize()
: gmx::ReadCheckpointDataHolder
- destinations
: gmx_repl_ex
- detect()
: gmx::CpuInfo
, gmx::HardwareTopology
- dev
: gmx::HardwareTopology::Device
- dev_rundata
: NbnxmGpu
- deviceContext()
: gmx::test::TestDevice
- deviceContext_
: PmeGpuProgramImpl
, PmeGpuSpecific
, NbnxmGpu
- deviceDetectionWarnings_
: gmx::DeviceDetectionResult
- deviceId
: gmx::HardwareTopology::Device
- deviceId_
: gmx::GpuTaskMapping
- deviceInfo()
: gmx::DeviceStreamManager
, gmx::test::TestDevice
- deviceInfoList_
: gmx::DeviceDetectionResult
- devices
: gmx::HardwareTopology::Machine
- DeviceStream()
: DeviceStream
- deviceStream()
: gmx::test::TestDevice
- DeviceStreamManager()
: gmx::DeviceStreamManager
- deviceStreams
: NbnxmGpu
- deviceVendor
: DeviceInformation
- dfhist
: t_state
- dhdlambda
: gmx::Task
- diagonal_2xnn_j_minus_i
: nbnxn_atomdata_t::SimdMasks
- diagonal_4xn_j_minus_i
: nbnxn_atomdata_t::SimdMasks
- didOutput()
: gmx::TextTableFormatter
- didPairlistH2D
: Nbnxm::gpu_timers_t::Interaction
- didPrune
: Nbnxm::gpu_timers_t::Interaction
- didRollingPrune
: Nbnxm::gpu_timers_t::Interaction
- difference_type
: gmx::basic_mdspan< ElementType, Extents, LayoutPolicy, AccessorPolicy >
, gmx::internal::SimdArrayRef< T >
, gmx::ArrayRef< typename >
, gmx::FixedCapacityVector< T, capacity >
- Dihedrals
: ListedForces
- dihedrals
: AllVsiteBondedInteractions
- dim
: t_pullcoord
, t_pbc
- dimensions()
: Nbnxm::Grid
- dimParams
: gmx::DimParams
, gmx::test::AwhTestParameters
, gmx::test::AwhFepLambdaStateTestParameters
, gmx::Bias
- dir
: gmx::DataFileInfo
- DirectoryEnumerator()
: gmx::DirectoryEnumerator
- disableInputOptionChecking()
: gmx::FileNameOptionManager
- disableUnusedEntriesCheck()
: gmx::test::TestReferenceChecker
- DisableUpdateSkips
: gmx::BiasParams
- discard()
: gmx::ThreeFry2x64General< rounds, internalCounterBits >
- disconnectClient()
: gmx::ImdSession::Impl
- dispatchFreeEnergyKernel()
: nonbonded_verlet_t
- dispatchNonbondedKernel()
: nonbonded_verlet_t
- dispatchPruneKernel()
: PairlistSets
, PairlistSet
- dispatchPruneKernelCpu()
: nonbonded_verlet_t
- dispatchPruneKernelGpu()
: nonbonded_verlet_t
- dispersion_shift
: NBParamGpu
, cl_nbparam_params
- displayName()
: gmx::test::anonymous_namespace{testinit.cpp}::TestProgramContext
, gmx::IProgramContext
, gmx::CommandLineProgramContext
, gmx::anonymous_namespace{programcontext.cpp}::DefaultProgramContext
- disre_initf
: history_t
- disre_rm3tav
: history_t
- dist
: swap_compartment
- distance2()
: gmx::AnalysisNeighborhoodPair
- distance_squared_tolerance
: gmx::shakedata
- distArray_
: gmx::analysismodules::anonymous_namespace{pairdist.cpp}::PairDistanceModuleData
- distccut
: methoddata_insolidangle
- distribution_type
: gmx::UniformRealDistribution< RealType >::param_type
, gmx::ExponentialDistribution< RealType >::param_type
, gmx::NormalDistribution< RealType >::param_type
, gmx::TabulatedNormalDistribution< RealType, tableBits >::param_type
, gmx::UniformIntDistribution< IntType >::param_type
, gmx::GammaDistribution< RealType >::param_type
- dlbOption
: gmx::DomdecOptions
- dlbScaling
: gmx::DomdecOptions
- doAll
: Nbnxm::KernelBenchOptions
- doBool()
: gmx::FileIOXdrSerializer
, gmx::ISerializer
- doBoolArray()
: gmx::ISerializer
- doChar()
: gmx::FileIOXdrSerializer
- doCharArray()
: gmx::FileIOXdrSerializer
- doCheckpoint()
: ekinstate_t
- doDouble()
: gmx::FileIOXdrSerializer
- doFloat()
: gmx::FileIOXdrSerializer
- doInt()
: gmx::FileIOXdrSerializer
- doInt32()
: gmx::FileIOXdrSerializer
- doInt64()
: gmx::FileIOXdrSerializer
- doIvec()
: gmx::FileIOXdrSerializer
- domain
: gmx::HardwareTopology::Device
- DomainDecompositionBuilder()
: gmx::DomainDecompositionBuilder
- domainGroups
: AtomDistribution
- DomainInfo()
: gmx::DomainInfo
- domainSetup()
: Nbnxm::GridSet
- DomainSetup()
: Nbnxm::GridSet::DomainSetup
- domdec_
: gmx::DomainInfo
- DomDecHelper
: gmx::TopologyHolder
, gmx::DomDecHelper
- domdecOptions
: gmx::LegacyMdrunOptions
- doMdrun()
: gmx::test::anonymous_namespace{periodicactions.cpp}::PeriodicActionsTest
- doMembed()
: gmx::MembedHolder
- done()
: gmx::AbstractAverageHistogram
- doNeighborSearch
: gmx::StepWorkload
- doOpaque()
: gmx::FileIOXdrSerializer
- doPmeLoadBalancing()
: gmx::PmeLoadBalanceHelper
- doReal()
: gmx::FileIOXdrSerializer
- doRerun
: gmx::LegacySimulatorData
- doRvec()
: gmx::FileIOXdrSerializer
- doRvecArray()
: gmx::FileIOXdrSerializer
- doSkippedUpdatesForAllPoints()
: gmx::BiasState
, gmx::Bias
- doSkippedUpdatesInNeighborhood()
: gmx::BiasState
- doString()
: gmx::FileIOXdrSerializer
- dot()
: gmx::BasicVector< ValueType >
- doTestParticleInsertion
: Nbnxm::GridSet::DomainSetup
- double_prec
: CheckpointHeaderContents
- doubleBlockLength()
: gmx::CorrelationBlockData
- DoubleOption()
: gmx::DoubleOption
- DoubleOptionInfo()
: gmx::DoubleOptionInfo
- DoubleOptionStorage
: gmx::DoubleOption
, gmx::DoubleOptionStorage
- doUChar()
: gmx::FileIOXdrSerializer
- doUCharArray()
: gmx::FileIOXdrSerializer
- doUShort()
: gmx::FileIOXdrSerializer
- dt
: t_UmbrellaWindow
, gmx::AnalysisDataDisplacementModule::Impl
, UmbrellaOptions
, anonymous_namespace{edsam.cpp}::t_edflood
- dtoler
: gmx::test::anonymous_namespace{bonded.cpp}::iListInput
- dtSample
: gmx::CorrelationGrid
- dummy
: gmx_cache_protect_t
- dummyMass
: VirtualSiteConfiguration
- dummySelection_
: gmx::test::ModuleTest
- dummyTopology_
: gmx::test::ModuleTest
- dump()
: gmx::ReadCheckpointDataHolder
- dv
: pull_group_work_t
- dvdl
: f_thread_t
, DispersionCorrection::Correction
- dvdl_lin
: gmx_enerdata_t
- dvdl_nonlin
: gmx_enerdata_t
- dvdlambda
: gmx::test::anonymous_namespace{bonded.cpp}::OutputQuantities
- dx()
: gmx::test::AnalysisDataTestInputFrame
, gmx::AnalysisNeighborhoodPair
, gmx::AnalysisDataFrameRef
, gmx::AnalysisDataFrameHeader
, gmx::AnalysisDataPointSetRef
- dxdf
: gmx::VsiteThread
- dy()
: gmx::AnalysisDataFrameRef
, gmx::AnalysisDataPointSetRef
- dynamicMask()
: gmx::SelectionOption
- dynamicPruneTime
: gmx_wallclock_gpu_nbnxn_t