Gromacs
2021.6
Main Page
Modules
Other Docs
Namespaces
Classes
Files
Examples
Namespace List
Namespace Members
All
Functions
Variables
Typedefs
Enumerations
Enumerator
a
b
c
d
e
f
g
h
i
j
k
l
m
n
o
p
q
r
s
t
u
v
w
z
All
Classes
Namespaces
Files
Functions
Variables
Typedefs
Enumerations
Enumerator
Friends
Macros
Groups
Pages
- c -
c_sampleCoordinates1() :
gmx::test::anonymous_namespace{pmesplinespreadtest.cpp}
c_sampleCoordinates13() :
gmx::test::anonymous_namespace{pmesplinespreadtest.cpp}
c_sampleCoordinates2() :
gmx::test::anonymous_namespace{pmesplinespreadtest.cpp}
c_waterPositions() :
gmx::test
calc_dist_iter() :
gmx
calc_dist_iter_simd() :
gmx
calc_dr_x_f_simd() :
gmx
calc_dr_x_xp_simd() :
gmx
calc_listed() :
anonymous_namespace{listed_forces.cpp}
calc_listed_lambda() :
anonymous_namespace{listed_forces.cpp}
calc_one_bond() :
anonymous_namespace{listed_forces.cpp}
calc_radius() :
anonymous_namespace{edsam.cpp}
calc_vec() :
gmx::analysismodules::anonymous_namespace{angle.cpp}
calcCheckCoveringInterval() :
gmx::anonymous_namespace{biasparams.cpp}
calcTargetUpdateInterval() :
gmx::anonymous_namespace{biasparams.cpp}
calculateAcceptanceWeight() :
gmx
calculateCOM() :
gmx::anonymous_namespace{com.cpp}
calculateCubicSplineCoefficients() :
gmx::anonymous_namespace{cubicsplinetable.cpp}
calculateFELambdaMarginalDistribution() :
gmx::anonymous_namespace{biasstate.cpp}
calculateUlpDifference() :
gmx::test::anonymous_namespace{testasserts.cpp}
callAddGlobalTestEnvironment() :
gmx::test
castOrNull() :
gmx
cbrt() :
gmx
cbrtSingleAccuracy() :
gmx
centerPeriodicValueAroundZero() :
gmx::anonymous_namespace{biasgrid.cpp}
centerTypeNames() :
gmx
changePinningPolicy() :
gmx
charArrayRefFromArray() :
gmx::test
check_assign_connected() :
gmx
check_assign_triangle() :
gmx
check_cons() :
gmx
checkAllPairsFound() :
anonymous_namespace{nbsearch.cpp}
checkAppend() :
gmx::anonymous_namespace{listoflists.cpp}
checkAwhParams() :
gmx
checkBiasParams() :
gmx::anonymous_namespace{read_params.cpp}
checkBoxAgainstReference() :
gmx::test
checkConfFile() :
gmx::test
checkCustomVector() :
gmx::test::anonymous_namespace{refdata_tests.cpp}
checkDimParams() :
gmx::anonymous_namespace{read_params.cpp}
checkDoesNotFind() :
anonymous_namespace{hashedmap.cpp}
checkEnergiesAgainstReferenceData() :
gmx::test
checkEqualCaseInsensitive() :
gmx::test::anonymous_namespace{stringutil.cpp}
checkExternalGroups() :
gmx::anonymous_namespace{selectioncollection.cpp}
checkFepLambdaDimDecouplingConsistency() :
gmx::anonymous_namespace{read_params.cpp}
checkFepLambdaDimParams() :
gmx::anonymous_namespace{read_params.cpp}
checkFinds() :
anonymous_namespace{hashedmap.cpp}
checkForcesAgainstReference() :
gmx::test
checkForUnknownOptionsInKeyValueTree() :
gmx
checkFrame() :
gmx::test::anonymous_namespace{mock_datamodule.cpp}
checkGpu() :
gmx
checkHardwareOversubscription() :
gmx
checkHeader() :
gmx::test::anonymous_namespace{mock_datamodule.cpp}
checkIfRandomDeviceIsFunctional() :
gmx
checkInputConsistencyAwh() :
gmx::anonymous_namespace{read_params.cpp}
checkInputConsistencyAwhBias() :
gmx::anonymous_namespace{read_params.cpp}
checkInputConsistencyInterval() :
gmx
checkMtsConsistency() :
gmx::anonymous_namespace{read_params.cpp}
checkOutput() :
gmx::test::anonymous_namespace{bonded.cpp}
checkOutputFile() :
gmx::anonymous_namespace{handlerestart.cpp}
checkPoints() :
gmx::test::anonymous_namespace{mock_datamodule.cpp}
checkpointVersion() :
gmx
checkPositionsAgainstReference() :
gmx::test
checkPullDimParams() :
gmx::anonymous_namespace{read_params.cpp}
checkReferenceDataPoint() :
gmx::test::anonymous_namespace{mock_datamodule.cpp}
checkResults1dHaloWith1Pulse() :
gmx::test::anonymous_namespace{haloexchange_mpi.cpp}
checkResults1dHaloWith2Pulses() :
gmx::test::anonymous_namespace{haloexchange_mpi.cpp}
checkResults2dHaloWith1PulseInEachDim() :
gmx::test::anonymous_namespace{haloexchange_mpi.cpp}
checkResults2dHaloWith2PulsesInDim1() :
gmx::test::anonymous_namespace{haloexchange_mpi.cpp}
checkSelections() :
gmx::analysismodules::anonymous_namespace{distance.cpp}
checkTopologyProperties() :
gmx::anonymous_namespace{selectioncollection.cpp}
checkTrajectoryAgainstReferenceData() :
gmx::test
checkUnusedEntries() :
gmx::test::anonymous_namespace{refdata.cpp}
checkUseModularSimulator() :
gmx
checkUserGpuIds() :
gmx
checkVelocitiesAgainstReference() :
gmx::test
checkXvgDataPoint() :
gmx::test::anonymous_namespace{xvgtest.cpp}
checkXvgFile() :
gmx::test
chooseStartingBehavior() :
gmx::anonymous_namespace{handlerestart.cpp}
clear_constraint_quantity_nonlocal() :
gmx
clearTaskForceBufferUsedElements() :
gmx
closeLogFile() :
gmx
closestIntegerPoint() :
gmx::anonymous_namespace{gausstransform.cpp}
cmap_setup_grid_index() :
anonymous_namespace{bonded.cpp}
codePathToString() :
gmx::test
compareBox() :
gmx::test
compareCoordinates() :
gmx::test
compareDifferentHandles() :
gmx::test::anonymous_namespace{symtab.cpp}
compareDifferentIndices() :
gmx::test
compareForces() :
gmx::test
compareFrames() :
gmx::test::anonymous_namespace{periodicactions.cpp}
compareKeyValueTrees() :
gmx
compareLists() :
gmx::anonymous_namespace{listoflists.cpp}
compareSymtabLookupAndHandle() :
gmx::test::anonymous_namespace{symtab.cpp}
compareVelocities() :
gmx::test
compareViews() :
gmx::test
compareViewsIgnoreConst() :
gmx::test
compileSelection() :
gmx
computeAreas() :
gmx::analysismodules::anonymous_namespace{sasa.cpp}
computeBoundingBox() :
gmx::anonymous_namespace{nbsearch.cpp}
computeDisplacements() :
gmx::anonymous_namespace{shake.cpp}
,
gmx::anonymous_namespace{findallgputasks.cpp}
computeDistancesSquared() :
gmx::anonymous_namespace{shake.cpp}
computeHalfOfReducedMasses() :
gmx::anonymous_namespace{shake.cpp}
computeMassesAndCharges() :
gmx::internal::anonymous_namespace{selection.cpp}
computeMaxUpdateGroupRadius() :
gmx
computePaddedSize() :
gmx::detail
connolly_plot() :
gmx::analysismodules::anonymous_namespace{sasa.cpp}
constr_iatomptr() :
gmx
constr_r_max() :
gmx
constr_r_max_moltype() :
gmx
constr_recur() :
gmx
constrain_coordinates() :
gmx
constrain_lincs() :
gmx
constrain_shake() :
gmx
constrain_velocities() :
gmx
constraintAtomRange() :
gmx
constraintGroupRadius() :
gmx
construct_vsites() :
gmx
construct_vsites_thread() :
gmx
constructVirtualSites() :
gmx
constructVirtualSitesGlobal() :
gmx
contains() :
gmx
convertDoubleReferenceValue() :
gmx::test
convertFlag() :
gmx
convertFromStringArrayRef() :
gmx::test::anonymous_namespace{cmdlinetest.cpp}
convertParameters() :
gmx::anonymous_namespace{electricfield.cpp}
convertRVecToFloat3OnDevice() :
gmx::test
convertRVecToFloat3OnHost() :
gmx::test
convertToCheckpointSignal() :
gmx
convertToResetSignal() :
gmx
convertToStopSignal() :
gmx
coordinates() :
gmx::test::anonymous_namespace{mshift.cpp}
coordinatesWhole() :
gmx::test::anonymous_namespace{mshift.cpp}
copyOf() :
gmx
copysign() :
gmx
cos() :
gmx
cosSingleAccuracy() :
gmx
coulombDerivative() :
gmx::test::anonymous_namespace{splinetable.cpp}
coulombFunction() :
gmx::test::anonymous_namespace{splinetable.cpp}
count_triangle_constraints() :
gmx
countAndSortExclusions() :
gmx::anonymous_namespace{exclusionblocks.cpp}
countFlexibleConstraints() :
gmx
countGpuTasksOnThisNode() :
gmx::anonymous_namespace{taskassignment.cpp}
countInterUpdategroupVsites() :
gmx
countLeadingSpace() :
gmx::anonymous_namespace{rstparser.cpp}
countNonlinearVsites() :
gmx
countOverAllRanks() :
gmx::anonymous_namespace{taskassignment.cpp}
countSamples() :
gmx
countTrailingZeroRows() :
gmx
countUniqueGpuIdsUsed() :
gmx::anonymous_namespace{reportgpuusage.cpp}
countWords() :
gmx
cprod() :
gmx
cpuIsAmdZen1() :
gmx::anonymous_namespace{support.cpp}
cpuIsX86Nehalem() :
gmx
crattle() :
gmx
create_unique_with_deleter() :
gmx
createBasicTop() :
gmx::anonymous_namespace{mtop.cpp}
createElectricFieldModule() :
gmx
createEntry() :
gmx::test::anonymous_namespace{refdata_xml.cpp}
createEnumOptionStorage() :
gmx::internal
createInteractiveMolecularDynamicsModule() :
gmx
createMatrix3x3FromLegacyMatrix() :
gmx
createMinimalTrajectoryFrameWriter() :
gmx::test
createSelectionHelpTopic() :
gmx
createSimulationWorkload() :
gmx
createSwapCoordinatesModule() :
gmx
createTrajectoryFrameWriter() :
gmx
createTwoResidueTopology() :
gmx::anonymous_namespace{mtop.cpp}
cross() :
gmx
csettle() :
gmx
cshake() :
gmx
cubicSplineInterpolationFromFunctionAndDerivative() :
gmx::anonymous_namespace{cubicsplinetable.cpp}
current_function_helper() :
gmx::internal
currentGlobalLambda() :
gmx::anonymous_namespace{freeenergyparameters.cpp}
currentLambdas() :
gmx
cvtB2IB() :
gmx
cvtD2F() :
gmx
cvtDD2F() :
gmx
cvtF2D() :
gmx
cvtF2DD() :
gmx
cvtI2R() :
gmx
cvtIB2B() :
gmx
cvtR2I() :
gmx
cvttR2I() :
gmx
Generated on Fri Jul 8 2022 10:27:59 for Gromacs by
1.8.5