- c -

• calculate() : ListedForces
• calculateForces() : gmx::IForceProvider , gmx::ForceProviders
• capacity() : gmx::ArrayRef< typename >
• cast() : gmx::Any
• castRef() : gmx::Any
• centerOfMass() : gmx::Site
• changePairlistRadii() : nonbonded_verlet_t , PairlistSets
• charge() : gmx::SelectionPosition
• charges() : gmx::Selection
• checkAbilityDependencies() : gmx::SetForces , gmx::SetPrecision , gmx::SetStartTime , gmx::SetTimeStep , gmx::SetVelocities , gmx::IOutputAdapter , gmx::OutputSelector , gmx::SetAtoms , gmx::SetBox
• checkAny() : gmx::test::TestReferenceChecker
• checkBoolean() : gmx::test::TestReferenceChecker
• checkCompound() : gmx::test::TestReferenceChecker
• checkDouble() : gmx::test::TestReferenceChecker
• checkEmptySequence() : gmx::test::TestReferenceChecker
• checker() : gmx::test::StringTestBase
• checkFile() : gmx::test::IFileMatcher
• checkFileContents() : gmx::test::StringTestBase
• checkFloat() : gmx::test::TestReferenceChecker
• checkInt32() : gmx::test::TestReferenceChecker
• checkInt64() : gmx::test::TestReferenceChecker
• checkInteger() : gmx::test::TestReferenceChecker
• checkKeyValueTreeObject() : gmx::test::TestReferenceChecker
• checkKeyValueTreeValue() : gmx::test::TestReferenceChecker
• checkOutputFiles() : gmx::test::CommandLineTestHelper , gmx::test::CommandLineTestBase
• checkpointData() : gmx::ReadCheckpointDataHolder , gmx::WriteCheckpointDataHolder
• CheckpointError() : gmx::CheckpointError
• CheckpointHandler() : gmx::CheckpointHandler
• checkPresent() : gmx::test::TestReferenceChecker
• checkReal() : gmx::test::TestReferenceChecker
• checkRealFromString() : gmx::test::TestReferenceChecker
• checkRedirectedFiles() : gmx::test::TestFileOutputRedirector
• checkSequence() : gmx::test::TestReferenceChecker
• checkSequenceArray() : gmx::test::TestReferenceChecker
• checkSequenceCompound() : gmx::test::TestReferenceChecker
• checkSession() : gmx::test::InteractiveTestHelper
• checkStream() : gmx::test::ITextBlockMatcher
• checkString() : gmx::test::TestReferenceChecker
• checkText() : gmx::test::StringTestBase
• checkTextBlock() : gmx::test::TestReferenceChecker
• checkUChar() : gmx::test::TestReferenceChecker
• checkUInt32() : gmx::test::TestReferenceChecker
• checkUInt64() : gmx::test::TestReferenceChecker
• checkUnusedEntries() : gmx::test::TestReferenceChecker
• checkValue() : gmx::test::TestReferenceChecker
• checkVector() : gmx::test::TestReferenceChecker
• clear() : gmx::AnalysisDataValue , gmx_ga2la_t , gmx::HashedMap< T > , gmx::PaddedVector< T, Allocator > , gmx::UpdateGroupsCog , gmx::TextTableFormatter , gmx::RestraintManager , gmx::RangePartitioning , gmx::FixedCapacityVector< typename, size_t > , gmx::FlagsTemplate< FlagType > , gmx::MessageStringCollector , gmx::ListOfLists< typename >
• clearAll() : gmx::FlagsTemplate< FlagType >
• clearAndResizeHashTable() : gmx::HashedMap< T >
• clearFlag() : gmx::AbstractOption , gmx::AbstractOptionStorage
• clearSet() : gmx::AbstractOptionStorage , gmx::OptionStorageTemplate< T >
• ClfftInitializer() : gmx::ClfftInitializer
• ClHandle() : gmx::ClHandle< cl_type >
• clone() : gmx::AbstractAverageHistogram
• cloneOnSpawnedThread() : gmx::Mdrunner
• close() : gmx::StringOutputStream , gmx::StandardInputStream , gmx::TextInputFile , gmx::TextOutputFile , gmx::StringInputStream , gmx::TextReader , gmx::TextInputStream , gmx::TextOutputStream , gmx::TextWriter
• closeAfterForceComputationCpu() : DDBalanceRegionHandler
• closeAfterForceComputationGpu() : DDBalanceRegionHandler
• closeTimingRegion() : GpuRegionTimerWrapper< GpuRegionTimerImpl > , GpuRegionTimerImpl
• cog() : gmx::UpdateGroupsCog
• cogForAtom() : gmx::UpdateGroupsCog
• cogIndex() : gmx::UpdateGroupsCog
• collectiveIndex() : gmx::LocalAtomSet
• columnCount() : gmx::AnalysisDataStorageFrame , gmx::test::AnalysisDataTestInput , gmx::AnalysisDataPointSetRef , gmx::AbstractAnalysisData
• CommandLine() : gmx::test::CommandLine
• commandLine() : gmx::CommandLineProgramContext , gmx::test::CommandLineTestBase , gmx::IProgramContext
• CommandLineHelpContext() : gmx::CommandLineHelpContext
• CommandLineHelpWriter() : gmx::CommandLineHelpWriter
• CommandLineModuleManager() : gmx::CommandLineModuleManager
• CommandLineParser() : gmx::CommandLineParser
• CommandLineProgramContext() : gmx::CommandLineProgramContext
• CommandLineTestHelper() : gmx::test::CommandLineTestHelper
• commitValues() : gmx::OptionStorageTemplate< T >
• communicateHaloCoordinates() : gmx::GpuHaloExchange
• communicateHaloForces() : gmx::GpuHaloExchange
• communicationBuffer() : gmx::ObservablesReducer
• compile() : gmx::SelectionCollection
• completeDefaultFileName() : gmx::FileNameOptionManager
• completeFileName() : gmx::FileNameOptionManager
• computeVirial() : gmx::ForceWithShiftForces
• constArrayRefFromArray() : gmx::ArrayRef< typename >
• constArrayRefWithPadding() : gmx::PaddedVector< T, Allocator > , gmx::ArrayRefWithPadding< typename >
• ConstraintsParam() : gmx::ConstraintsParam
• construct() : gmx::VirtualSitesHandler , gmx::DefaultInitializationAllocator< T, A > , PairlistSets
• constructPairlist() : nonbonded_verlet_t
• constView() : gmx::GaussTransform3D , gmx::MrcDensityMapOfFloatReader
• consume() : GpuEventSynchronizer
• contains() : gmx::test::CommandLine
• context() : gmx::DeviceStreamManager
• convert() : gmx::OptionValueConverterSimple< OutType >
• convertCoordinates() : nonbonded_verlet_t
• convertCoordinatesGpu() : nonbonded_verlet_t
• convertOptionValue() : gmx::SelectionOptionManager
• convertValue() : gmx::OptionStorageTemplate< T > , gmx::AbstractOptionStorage
• coordinates() : gmx::Selection
• copyAtoms() : gmx::TopologyInformation
• copyContents() : gmx::AbstractAnalysisArrayData
• copyright() : gmx::BinaryInformationSettings
• copyToLegacySymtab() : StringTable
• copyTot_atomtypes() : PreprocessingAtomTypes
• count() : nbnxn_cycle_t , gmx_ana_pos_t
• countRestraints() : gmx::RestraintManager
• coveredFraction() : gmx::Selection
• create() : gmx::ConvertTprInfo , gmx::NonbondedBenchmarkInfo , gmx::RestraintMDModule , gmx::Any , gmx::QMMMModuleInfo , gmx::Any , gmx::DensityFittingModuleInfo
• createArray() : gmx::KeyValueTreeValueBuilder
• createFileMatcher() : gmx::test::TextFileMatch , gmx::test::IFileMatcherSettings , gmx::test::NoContentsMatch
• createMatcher() : gmx::test::ITextBlockMatcherSettings , gmx::test::FilteringExactTextMatch , gmx::test::NoTextMatch , gmx::test::ExactTextMatch , gmx::test::ConfMatch , gmx::test::XvgMatch
• createModule() : gmx::TrajectoryAnalysisCommandLineRunner , gmx::ICommandLineOptionsModule
• createObject() : gmx::KeyValueTreeValueBuilder
• createStorage() : gmx::AbstractOptionSection , gmx::AbstractOption
• cross() : gmx::BasicVector< ValueType >
• CubicSplineTable() : gmx::CubicSplineTable
• currentFrame() : gmx::AnalysisDataStorage