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• paddedArrayRef() : gmx::ArrayRefWithPadding< typename >
• paddedConstArrayRef() : gmx::ArrayRefWithPadding< typename >
• paddedSize() : gmx::PaddedVector< T, Allocator >
• PaddedVector() : gmx::PaddedVector< T, Allocator >
• pairlistInnerRadius() : nonbonded_verlet_t
• pairlistIsSimple() : nonbonded_verlet_t
• pairlistOuterRadius() : nonbonded_verlet_t
• pairlistSet() : PairlistSets
• PairlistSets() : PairlistSets
• pairlistSets() : nonbonded_verlet_t
• PairSearch() : PairSearch
• paragraphBreak() : gmx::HelpWriterContext
• ParallelConsistencyError() : gmx::ParallelConsistencyError
• parallelDataStarted() : gmx::IAnalysisDataModule , gmx::AnalysisDataModuleParallel , gmx::AnalysisDataSimpleHistogramModule , gmx::AnalysisDataWeightedHistogramModule
• parallelizationFactor() : gmx::AnalysisDataParallelOptions
• parallelSelection() : gmx::TrajectoryAnalysisModuleData
• parallelSelections() : gmx::TrajectoryAnalysisModuleData
• param() : gmx::UniformRealDistribution< RealType > , gmx::ExponentialDistribution< RealType > , gmx::GammaDistribution< RealType > , gmx::NormalDistribution< RealType > , gmx::TabulatedNormalDistribution< RealType, tableBits > , gmx::UniformIntDistribution< IntType >
• param_type() : gmx::ExponentialDistribution< RealType >::param_type , gmx::GammaDistribution< RealType >::param_type , gmx::NormalDistribution< RealType >::param_type , gmx::TabulatedNormalDistribution< RealType, tableBits >::param_type , gmx::UniformIntDistribution< IntType >::param_type , gmx::UniformRealDistribution< RealType >::param_type
• parametersAllMasses1() : gmx::SettleData
• parametersMassWeighted() : gmx::SettleData
• params() : PairlistSets
• parse() : gmx::CommandLineParser
• parseFromFile() : gmx::SelectionCollection
• parseFromStdin() : gmx::SelectionCollection
• parseFromString() : gmx::SelectionCollection
• parseInteractive() : gmx::SelectionCollection
• parseRequestedFromFile() : gmx::SelectionOptionManager
• parseRequestedFromStdin() : gmx::SelectionOptionManager
• parseRequestedFromString() : gmx::SelectionOptionManager
• partialCleanUp() : MoleculeInformation
• pbcType() : gmx::TopologyInformation
• permitSeparatePmeRanks() : gmx::SeparatePmeRanksPermitted
• PhysicalNodeCommunicator() : gmx::PhysicalNodeCommunicator
• pinningPolicy() : gmx::HostAllocationPolicy , gmx::ForceBuffers
• plotFormat() : gmx::AnalysisDataPlotSettings
• plotSettings() : gmx::TrajectoryAnalysisSettings
• PmeForceSenderGpu() : gmx::PmeForceSenderGpu
• PmeGpuProgram() : PmeGpuProgram
• PmePpCommGpu() : gmx::PmePpCommGpu
• pointsAdded() : gmx::AnalysisDataAverageModule , gmx::AnalysisDataFrameAverageModule , gmx::AnalysisDataDisplacementModule , gmx::AnalysisDataSimpleHistogramModule , gmx::AnalysisDataWeightedHistogramModule , gmx::AnalysisDataBinAverageModule , gmx::AnalysisDataLifetimeModule , gmx::AbstractPlotModule , gmx::AnalysisDataPlotModule , gmx::AnalysisDataVectorPlotModule , gmx::IAnalysisDataModule , gmx::AnalysisDataModuleSerial , gmx::AnalysisDataModuleParallel
• pointSet() : gmx::test::AnalysisDataTestInputFrame , gmx::AnalysisDataFrameRef
• pointSetCount() : gmx::AnalysisDataFrameRef , gmx::test::AnalysisDataTestInputFrame
• pop_back() : gmx::FixedCapacityVector< typename, size_t > , gmx::KeyValueTreePath
• pop_last() : gmx::KeyValueTreePath
• posCount() : gmx::Selection
• position() : gmx::Selection
• PotentialPointData() : gmx::PotentialPointData
• prepareAndWriteFrame() : gmx::TrajectoryFrameWriter
• prepareTest() : gmx::test::SetVelocitySupportedFiles , gmx::test::SetAtomsSupportedFiles , gmx::test::SetForceSupportedFiles , gmx::test::AnyOutputSupportedFiles , gmx::test::NoOptionalOutput , gmx::test::OutputSelectorDeathTest , gmx::test::SetForceUnSupportedFiles , gmx::test::SetVelocityUnSupportedFiles , gmx::test::SetPrecisionSupportedFiles , gmx::test::SetPrecisionUnSupportedFiles , gmx::test::SetAtomsUnSupportedFiles
• prependContext() : gmx::GromacsException
• PreprocessingAtomTypes() : PreprocessingAtomTypes
• present() : gmx::test::AnalysisDataTestInputPointSet , gmx::AnalysisDataFrameRef , gmx::AnalysisDataPointSetRef
• presentAllData() : gmx::test::AnalysisDataTestFixture
• presentDataFrame() : gmx::test::AnalysisDataTestFixture
• printDebugInfo() : gmx::Selection
• printInfo() : gmx::Selection
• printStringTableStorageToFile() : StringTable
• printTree() : gmx::SelectionCollection
• printTypes() : PreprocessingAtomTypes
• printXvgrInfo() : gmx::SelectionCollection
• process() : gmx::OutputRequirementOptionDirector
• processAll() : gmx::AbstractOptionStorage , gmx::OptionStorageTemplate< T >
• processFrame() : gmx::IOutputAdapter , gmx::OutputSelector , gmx::SetAtoms , gmx::SetVelocities , gmx::SetBox , gmx::SetPrecision , gmx::SetForces , gmx::SetStartTime , gmx::SetTimeStep
• processId() : gmx::BinaryInformationSettings
• processSet() : gmx::OptionStorageTemplate< T > , gmx::AbstractOptionStorage
• processSetValues() : gmx::OptionStorageTemplate< T >
• processValue() : gmx::OptionStorageTemplateSimple< T >
• Profiling() : gmx::Profiling
• programName() : gmx::IProgramContext , gmx::CommandLineProgramContext
• prop() : AtomProperties
• pull_coord_work_t() : pull_coord_work_t
• PullCoordExpressionParser() : gmx::PullCoordExpressionParser
• push_back() : gmx::FixedCapacityVector< typename, size_t >
• pushBack() : gmx::ListOfLists< typename >
• pushBackListOfSize() : gmx::ListOfLists< typename >
• putOnGrid() : PairSearch