- d -

• data() : gmx::AwhEnergyBlock , gmx::PaddedVector< T, Allocator > , gmx::EnumerationArray< EnumType, DataType, ArraySize > , gmx::ArrayRef< typename > , gmx::EnumerationArray< EnumType, DataType, ArraySize > , gmx::basic_mdspan< ElementType, Extents, LayoutPolicy, AccessorPolicy > , gmx::FixedCapacityVector< typename, size_t >
• DataFileFinder() : gmx::DataFileFinder
• DataFileInfo() : gmx::DataFileInfo
• DataFileOptions() : gmx::DataFileOptions
• dataFinished() : gmx::AnalysisDataProxy , gmx::AnalysisDataAverageModule , gmx::AnalysisDataFrameAverageModule , gmx::AnalysisDataDisplacementModule , gmx::internal::BasicAverageHistogramModule , gmx::AnalysisDataSimpleHistogramModule , gmx::AnalysisDataWeightedHistogramModule , gmx::AnalysisDataBinAverageModule , gmx::AnalysisDataLifetimeModule , gmx::AbstractPlotModule , gmx::IAnalysisDataModule , gmx::analysismodules::anonymous_namespace{select.cpp}::IndexFileWriterModule , gmx::AnalysisDataModuleSerial , gmx::AnalysisDataModuleParallel
• dataHandle() : gmx::TrajectoryAnalysisModuleData
• dataID() : gmx::MttkData , gmx::MttkPropagatorConnection , gmx::NoseHooverChainsData
• dataPropertyAboutToChange() : gmx::AnalysisDataModuleManager
• dataSet() : gmx::AnalysisDataFrameLocalDataHandle< ValueType >
• datasetCount() : gmx::TrajectoryAnalysisModule
• dataSetCount() : gmx::AbstractAnalysisData , gmx::AnalysisDataFrameLocalDataHandle< ValueType > , gmx::test::AnalysisDataTestInput
• datasetFromIndex() : gmx::TrajectoryAnalysisModule
• datasetFromName() : gmx::TrajectoryAnalysisModule
• dataSetIndex() : gmx::AnalysisDataPointSetRef , gmx::test::AnalysisDataTestInputPointSet
• datasetNames() : gmx::TrajectoryAnalysisModule
• dataStarted() : gmx::IAnalysisDataModule , gmx::AnalysisDataModuleSerial , gmx::AnalysisDataProxy , gmx::AnalysisDataAverageModule , gmx::AnalysisDataFrameAverageModule , gmx::AnalysisDataDisplacementModule , gmx::internal::BasicAverageHistogramModule , gmx::AnalysisDataBinAverageModule , gmx::AnalysisDataLifetimeModule , gmx::AbstractPlotModule , gmx::analysismodules::anonymous_namespace{select.cpp}::IndexFileWriterModule
• DataStorageRequester() : gmx::test::anonymous_namespace{mock_datamodule.cpp}::DataStorageRequester
• DDBalanceRegionHandler() : DDBalanceRegionHandler
• deallocate() : gmx::Allocator< T, AllocationPolicy >
• debugLevel() : gmx::CommandLineCommonOptionsHolder
• decay() : gmx::accessor_basic< ElementType >
• decideIfCheckpointingThisStep() : gmx::CheckpointHandler
• defaultBasename() : gmx::FileNameOption
• defaultEnergyTermsToCompare() : gmx::test::EnergyComparison
• defaultEnumIndex() : gmx::StringOption
• defaultExtension() : gmx::FileNameOptionInfo , gmx::FileNameOptionStorage
• defaultFloatTolerance() : gmx::test::FloatingPointTolerance
• defaultNiceLevel() : gmx::CommandLineModuleSettings
• defaultRealTolerance() : gmx::test::FloatingPointTolerance
• defaultRealUlpTol() : gmx::test::SimdBaseTest
• defaultSelectionText() : gmx::SelectionOption
• defaultType() : gmx::FileNameOption
• defaultValue() : gmx::OptionTemplate< T, U > , gmx::BooleanOptionInfo , gmx::BooleanOptionStorage
• defaultValueIfSet() : gmx::OptionTemplate< T, U >
• defaultValueIfSetExists() : gmx::AbstractOptionStorage
• defaultValues() : gmx::OptionInfo , gmx::AbstractOptionStorage , gmx::OptionStorageTemplate< T > , gmx::SelectionFileOptionStorage
• defaultValuesAsStrings() : gmx::OptionInfo , gmx::AbstractOptionStorage , gmx::OptionStorageTemplate< T > , gmx::SelectionFileOptionStorage
• deform() : gmx::Update
• deltaH() : ForeignLambdaTerms
• densityDataCopy() : gmx::MrcDensityMapOfFloatFromFileReader
• DensityFitting() : gmx::anonymous_namespace{densityfitting.cpp}::DensityFitting
• DensityFittingAmplitudeLookup() : gmx::DensityFittingAmplitudeLookup
• DensityFittingForce() : gmx::DensityFittingForce
• DensityFittingForceProvider() : gmx::DensityFittingForceProvider
• DensitySimilarityCrossCorrelation() : gmx::anonymous_namespace{densityfit.cpp}::DensitySimilarityCrossCorrelation
• DensitySimilarityInnerProduct() : gmx::anonymous_namespace{densityfit.cpp}::DensitySimilarityInnerProduct
• DensitySimilarityMeasure() : gmx::DensitySimilarityMeasure
• DensitySimilarityRelativeEntropy() : gmx::anonymous_namespace{densityfit.cpp}::DensitySimilarityRelativeEntropy
• DescribeNegationTo() : gmx::test::RVecMatcher< FloatType > , gmx::test::FloatTypeMatcher< FloatType >
• DescribeTo() : gmx::test::FloatTypeMatcher< FloatType > , gmx::test::RVecMatcher< FloatType >
• description() : gmx::AbstractOptionStorage , gmx::OptionTemplate< T, U > , gmx::SelectionOptionManager::Impl::SelectionRequest , gmx::test::TestDevice
• deserialize() : gmx::ReadCheckpointDataHolder
• detect() : gmx::CpuInfo , gmx::HardwareTopology
• deviceContext() : gmx::test::TestDevice
• deviceIdsAssigned() : gmx::GpuTaskAssignments
• deviceInfo() : gmx::DeviceStreamManager , gmx::test::TestDevice
• deviceStream() : gmx::test::TestDevice
• DeviceStream() : DeviceStream
• DeviceStreamManager() : gmx::DeviceStreamManager
• didOutput() : gmx::TextTableFormatter
• dimensions() : Nbnxm::Grid
• dimParams() : gmx::Bias
• DirectoryEnumerator() : gmx::DirectoryEnumerator
• disableInputOptionChecking() : gmx::FileNameOptionManager
• disablePmeRanks() : gmx::SeparatePmeRanksPermitted
• disableUnusedEntriesCheck() : gmx::test::TestReferenceChecker
• discard() : gmx::ThreeFry2x64General< rounds, internalCounterBits >
• disconnectClient() : gmx::ImdSession::Impl
• dispatchFreeEnergyKernels() : FreeEnergyDispatch , nonbonded_verlet_t
• dispatchNonbondedKernel() : nonbonded_verlet_t
• dispatchPruneKernel() : PairlistSet , PairlistSets
• dispatchPruneKernelCpu() : nonbonded_verlet_t
• dispatchPruneKernelGpu() : nonbonded_verlet_t
• displayName() : gmx::anonymous_namespace{programcontext.cpp}::DefaultProgramContext , gmx::test::anonymous_namespace{testinit.cpp}::TestProgramContext , gmx::IProgramContext , gmx::CommandLineProgramContext
• distance2() : gmx::AnalysisNeighborhoodPair
• doBool() : gmx::ISerializer , gmx::FileIOXdrSerializer
• doBoolArray() : gmx::ISerializer
• doChar() : gmx::FileIOXdrSerializer
• doCharArray() : gmx::FileIOXdrSerializer
• doCheckpoint() : df_history_t , ekinstate_t , gmx::NoseHooverGroup
• doCheckpointData() : gmx::NoseHooverTemperatureCoupling
• doDouble() : gmx::FileIOXdrSerializer
• doEnumArrayAsInt() : gmx::ISerializer
• doEnumAsInt() : gmx::ISerializer
• doFloat() : gmx::FileIOXdrSerializer
• doInt() : gmx::FileIOXdrSerializer
• doInt32() : gmx::FileIOXdrSerializer
• doInt64() : gmx::FileIOXdrSerializer
• doIvec() : gmx::FileIOXdrSerializer
• doListedForcesSorting() : gmx_reverse_top_t
• DomainDecompositionBuilder() : gmx::DomainDecompositionBuilder
• DomainInfo() : gmx::DomainInfo
• domainSetup() : Nbnxm::GridSet
• DomainSetup() : Nbnxm::GridSet::DomainSetup
• DomDecHelper() : gmx::DomDecHelper
• doMdrun() : gmx::test::PeriodicActionsTest
• doMembed() : gmx::MembedHolder
• done() : gmx::AbstractAverageHistogram
• doOpaque() : gmx::FileIOXdrSerializer
• doPmeLoadBalancing() : gmx::PmeLoadBalanceHelper
• doReal() : gmx::FileIOXdrSerializer
• doRvec() : gmx::FileIOXdrSerializer
• doRvecArray() : gmx::FileIOXdrSerializer
• doSimulationWork() : gmx::test::anonymous_namespace{observablesreducer.cpp}::Subscriber
• doSkippedUpdatesForAllPoints() : gmx::Bias , gmx::BiasState
• doSkippedUpdatesInNeighborhood() : gmx::BiasState
• doString() : gmx::FileIOXdrSerializer
• dot() : gmx::BasicVector< ValueType >
• doubleBlockLength() : gmx::CorrelationBlockData
• DoubleOption() : gmx::DoubleOption
• DoubleOptionInfo() : gmx::DoubleOptionInfo
• DoubleOptionStorage() : gmx::DoubleOptionStorage
• doUChar() : gmx::FileIOXdrSerializer
• doUCharArray() : gmx::FileIOXdrSerializer
• doUShort() : gmx::FileIOXdrSerializer
• DTensorsTimeAveragedHistory() : t_oriresdata
• dump() : gmx::ReadCheckpointDataHolder
• dvdl() : gmx::ThreadForceBuffer< ForceBufferElementType >
• dx() : gmx::AnalysisNeighborhoodPair , gmx::test::AnalysisDataTestInputFrame , gmx::AnalysisDataFrameHeader , gmx::AnalysisDataFrameRef , gmx::AnalysisDataPointSetRef
• dy() : gmx::AnalysisDataFrameRef , gmx::AnalysisDataPointSetRef
• dynamicMask() : gmx::SelectionOption