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• iBoundingBoxes() : Nbnxm::Grid
• id() : gmx::test::TestDevice
• iListInput() : gmx::test::anonymous_namespace{bonded.cpp}::iListInput
• IListIterator() : IListIterator
• IListProxy() : IListProxy
• IListRange() : IListRange
• Impl() : gmx::AnalysisDataSimpleHistogramModule::Impl , gmx::CommandLineParser::Impl , gmx::GaussTransform3D::Impl , gmx::DomainDecompositionBuilder::Impl , gmx::Update::Impl , gmx::UpdateConstrainGpu::Impl , gmx::AnalysisDataWeightedHistogramModule::Impl , gmx::LocalTopologyChecker::Impl , gmx::VirtualSitesHandler::Impl , gmx::ObservablesReducer::Impl , gmx_reverse_top_t::Impl , gmx::TextTableFormatter::Impl , gmx::HelpManager::Impl , gmx::AnalysisDataLifetimeModule::Impl , gmx::PmeCoordinateReceiverGpu::Impl , gmx::HelpLinks::Impl , gmx::HelpWriterContext::Impl , gmx::PmeForceSenderGpu::Impl , gmx::HelpWriterContext::Impl , gmx::OptionsAssigner::Impl , gmx::test::MockAnalysisDataModule::Impl , gmx::PmePpCommGpu::Impl , gmx::SelectionCollection::Impl , gmx::SelectionOptionManager::Impl , gmx::Gpu3dFft::Impl , gmx::SelectionParserSymbol::Impl , gmx::SelectionParserSymbolIterator::Impl , gmx::CommandLineHelpContext::Impl , gmx::Gpu3dFft::Impl , gmx::SelectionParserSymbolIterator::Impl , gmx::TrajectoryAnalysisModuleData::Impl , gmx::Gpu3dFft::ImplSyclRocfft::Impl , gmx::TrajectoryAnalysisSettings::Impl , gmx::TextReader::Impl , gmx::CommandLineHelpContext::Impl , gmx::MrcDensityMapOfFloatReader::Impl , gmx::test::TestReferenceChecker::Impl , gmx::MrcDensityMapOfFloatWriter::Impl , gmx::test::TestFileManager::Impl , gmx::CommandLineHelpWriter::Impl , gmx::DeviceStreamManager::Impl , gmx::ImdSession::Impl , gmx::CommandLineModuleManager::Impl , gmx::ListedForcesGpu::Impl , gmx::DensityFittingForce::Impl
• ImplCuFft() : gmx::Gpu3dFft::ImplCuFft
• ImplOcl() : gmx::Gpu3dFft::ImplOcl
• ImplSycl() : gmx::Gpu3dFft::ImplSycl
• ImplSyclMkl() : gmx::Gpu3dFft::ImplSyclMkl
• ImplSyclRocfft() : gmx::Gpu3dFft::ImplSyclRocfft
• includeAll() : gmx::AnalysisHistogramSettingsInitializer , gmx::AnalysisHistogramSettings
• includeCurrentDir() : gmx::DataFileOptions
• includeDataset() : gmx::test::AbstractTrajectoryAnalysisModuleTestFixture
• InconsistentInputError() : gmx::InconsistentInputError
• increaseWeightSumIteration() : gmx::PointState
• increasing() : gmx::ExponentialMovingAverage
• incrementNumUpdates() : gmx::HistogramSize
• indent() : gmx::RstParagraphIterator , gmx::TextLineWrapperSettings
• index() : gmx::AnalysisDataFrameHeader , gmx::test::AnalysisDataTestInputPointSet , gmx::test::AnalysisDataTestInputFrame , gmx::Site
• indexed() : gmx::AnalysisNeighborhoodPositions
• IndexGroupsAndNames() : gmx::IndexGroupsAndNames
• indices() : gmx::IndexGroupsAndNames
• info() : gmx::internal::OptionSectionImpl
• inInitialStage() : gmx::BiasState , gmx::HistogramSize
• init() : gmx::AnalysisDataFrameLocalData< ValueType > , gmx::internal::BasicHistogramImpl , gmx::AbstractAverageHistogram , gmx::AnalysisDataSimpleHistogramModule , gmx::AnalysisDataWeightedHistogramModule , gmx::AnalysisDataBinAverageModule , gmx::CommandLineHelpModule , gmx::ICommandLineModule , gmx::anonymous_namespace{cmdlinemodulemanager.cpp}::CMainCommandLineModule , gmx::ICommandLineOptionsModule , gmx::MimicCommunicator , gmx::UnionFinder , anonymous_namespace{legacymodules.cpp}::ObsoleteToolModule
• initAfterFirstFrame() : gmx::TrajectoryAnalysisModule , gmx::analysismodules::Msd , gmx::analysismodules::anonymous_namespace{rdf.cpp}::Rdf
• initAnalysis() : gmx::TrajectoryAnalysisModule , gmx::analysismodules::anonymous_namespace{freevolume.cpp}::FreeVolume , gmx::analysismodules::Msd , gmx::analysismodules::anonymous_namespace{pairdist.cpp}::PairDistance , gmx::analysismodules::anonymous_namespace{rdf.cpp}::Rdf , gmx::analysismodules::anonymous_namespace{sasa.cpp}::Sasa , AnalysisTemplate
• initAtoms() : gmx::test::TopologyManager
• initBehavior() : gmx::IOptionsBehavior , gmx::TimeUnitBehavior , gmx::SelectionOptionBehavior
• initConverter() : gmx::OptionStorageTemplateSimple< T >
• initCoveredFraction() : gmx::internal::SelectionData , gmx::Selection
• initDevice() : gmx::GpuTaskAssignments
• initEvaluation() : gmx::PositionCalculationCollection
• initFirstFrame() : gmx::TrajectoryAnalysisRunnerCommon
• initForceProviders() : gmx::anonymous_namespace{densityfitting.cpp}::DensityFitting , gmx::anonymous_namespace{electricfield.cpp}::ElectricField , gmx::anonymous_namespace{qmmm.cpp}::QMMM , gmx::MDModules , gmx::IMDModule , gmx::RestraintMDModule , gmx::RestraintMDModuleImpl
• initFrame() : gmx::PositionCalculationCollection , gmx::TrajectoryAnalysisRunnerCommon
• initFrameIndexGroup() : gmx::TrajectoryAnalysisRunnerCommon
• initFromArray() : gmx::test::CommandLine
• initGridPointState() : gmx::BiasState
• initHistoryFromState() : gmx::BiasState , gmx::Awh , gmx::Bias
• initializeAwhOutputFile() : OutputFile
• initialized() : gmx::test::TestReferenceChecker::Impl
• initializeEnergyHistory() : gmx::EnergyData
• initializeFrictionOutputFile() : OutputFile
• initializeMassesAndCharges() : gmx::internal::SelectionData
• initializeMembed() : gmx::MembedHolder
• initManager() : gmx::test::CommandLineModuleManagerTestBase
• initMdpOptions() : gmx::DensityFittingOptions , gmx::anonymous_namespace{electricfield.cpp}::ElectricFieldDimension , gmx::anonymous_namespace{electricfield.cpp}::ElectricField , gmx::QMMMOptions , gmx::IMdpOptionProvider
• initMdpTransform() : gmx::DensityFittingOptions , gmx::anonymous_namespace{electricfield.cpp}::ElectricField , gmx::QMMMOptions , gmx::MDModules , gmx::IMdpOptionProvider
• initMolInfo() : MoleculeInformation
• initOptions() : gmx::AnalysisDataPlotSettings , gmx::CommandLineCommonOptionsHolder , gmx::ICommandLineOptionsModule , gmx::OutputRequirementOptionDirector , gmx::SelectionCollection , gmx::SelectionOptionBehavior , gmx::SelectionOptionManager , gmx::TrajectoryAnalysisModule , gmx::analysismodules::anonymous_namespace{freevolume.cpp}::FreeVolume , gmx::analysismodules::Msd , gmx::analysismodules::anonymous_namespace{pairdist.cpp}::PairDistance , gmx::analysismodules::anonymous_namespace{rdf.cpp}::Rdf , gmx::analysismodules::anonymous_namespace{sasa.cpp}::Sasa , gmx::TrajectoryAnalysisRunnerCommon , gmx::test::TestOptionsProvider , gmx::test::anonymous_namespace{testoptions.cpp}::TestOptionsRegistry , AnalysisTemplate
• initOriginalIdsToGroup() : gmx::Selection
• initOutput() : gmx::anonymous_namespace{qmmm.cpp}::QMMMOutputProvider , gmx::DensityFittingOutputProvider , gmx::anonymous_namespace{electricfield.cpp}::ElectricField , gmx::IMDOutputProvider
• initRefCountArray() : gmx::analysismodules::anonymous_namespace{pairdist.cpp}::PairDistanceModuleData
• initSearch() : gmx::AnalysisNeighborhood
• initStorage() : gmx::IOptionSectionStorage , gmx::RepeatingOptionSectionStorage< T >
• initTopology() : gmx::test::TopologyManager , gmx::TrajectoryAnalysisRunnerCommon
• initWithGroupIndices() : gmx::MappedUnionFinder
• inputFile() : gmx::FileNameOption
• inputOutputFile() : gmx::FileNameOption
• inputStream() : gmx::test::InteractiveTestHelper
• inSection() : gmx::OptionsAssigner::Impl
• insert() : gmx_ga2la_t , gmx::HashedMap< T >
• insert_or_assign() : gmx::HashedMap< T >
• insertCalculation() : gmx::PositionCalculationCollection::Impl
• installationPrefix() : gmx::test::anonymous_namespace{testinit.cpp}::TestProgramContext , gmx::CommandLineProgramContext , gmx::anonymous_namespace{programcontext.cpp}::DefaultProgramContext , gmx::IProgramContext
• InstallationPrefixInfo() : gmx::InstallationPrefixInfo
• Int64Option() : gmx::Int64Option
• Int64OptionInfo() : gmx::Int64OptionInfo
• Int64OptionStorage() : gmx::Int64OptionStorage
• inTargetRegion() : gmx::PointState
• integerBins() : gmx::AnalysisHistogramSettingsInitializer
• IntegerBox() : gmx::IntegerBox
• IntegerOption() : gmx::IntegerOption
• IntegerOptionInfo() : gmx::IntegerOptionInfo
• IntegerOptionStorage() : gmx::IntegerOptionStorage
• integral() : gmx::NoseHooverTemperatureCoupling , gmx::NoseHooverGroup
• integralTime() : gmx::NoseHooverGroup
• integrate() : gmx::UpdateConstrainGpu::Impl
• interactionIndex() : VsiteAtomMapping
• interactionListForIntermolecularInteractions() : gmx_reverse_top_t
• interactionListForMoleculeType() : gmx_reverse_top_t
• InteractionOfType() : InteractionOfType
• interactionSelectionAll() : ListedForces
• InteractiveMD() : gmx::InteractiveMD
• InteractiveTestHelper() : gmx::test::InteractiveTestHelper
• InternalError() : gmx::InternalError
• InvalidInputError() : gmx::InvalidInputError
• inverseTimeConstant() : gmx::ExponentialMovingAverage
• inverseTimeScaleFactor() : gmx::TimeUnitManager
• invEtaMass() : gmx::MttkData
• IonSwapping() : gmx::IonSwapping
• IOutputAdapter() : gmx::IOutputAdapter
• is_always_contiguous() : gmx::layout_right::mapping< Extents > , gmx::basic_mdspan< ElementType, Extents, LayoutPolicy, AccessorPolicy >
• is_always_strided() : gmx::layout_right::mapping< Extents > , gmx::basic_mdspan< ElementType, Extents, LayoutPolicy, AccessorPolicy >
• is_always_unique() : gmx::basic_mdspan< ElementType, Extents, LayoutPolicy, AccessorPolicy > , gmx::layout_right::mapping< Extents >
• is_contiguous() : gmx::layout_right::mapping< Extents > , gmx::basic_mdspan< ElementType, Extents, LayoutPolicy, AccessorPolicy >
• is_strided() : gmx::layout_right::mapping< Extents > , gmx::basic_mdspan< ElementType, Extents, LayoutPolicy, AccessorPolicy >
• is_unique() : gmx::layout_right::mapping< Extents > , gmx::basic_mdspan< ElementType, Extents, LayoutPolicy, AccessorPolicy >
• isAllocated() : gmx::AbstractAnalysisArrayData
• isAtFullCouplingTimeStep() : gmx::NoseHooverChainsData , gmx::NoseHooverGroup
• isAtRootTopic() : gmx::HelpManager::Impl
• isAvailable() : gmx::internal::AnalysisDataStorageFrameData
• isBoolean() : gmx::AbstractOptionStorage
• isCheckCoveringStep() : gmx::BiasParams
• isCheckHistogramForAnomaliesStep() : gmx::BiasParams
• isCheckpointingStep() : gmx::CheckpointHandler
• isCompletionExport() : gmx::CommandLineHelpContext
• isContext() : gmx::anonymous_namespace{exceptions.cpp}::ErrorMessage
• isCoveredFractionDynamic() : gmx::internal::SelectionData , gmx::Selection
• isDirectoryOption() : gmx::FileNameOptionStorage , gmx::FileNameOptionInfo
• isDouble() : gmx::test::FloatingPointDifference
• isDynamic() : gmx::Selection , gmx::internal::SelectionData , gmx::analysismodules::anonymous_namespace{angle.cpp}::AnglePositionIterator
• isDynamicPruningStepCpu() : PairlistSets , nonbonded_verlet_t
• isDynamicPruningStepGpu() : PairlistSets , nonbonded_verlet_t
• isEmpty() : gmx::MessageStringCollector , gmx::Any , gmx::OutputAdapterContainer
• isEnumerated() : gmx::StringOptionInfo
• isFepLambdaAxis() : gmx::GridAxis
• isFepLambdaDimension() : gmx::DimParams
• isFileOpen() : gmx::AbstractPlotModule
• isFinished() : gmx::internal::AnalysisDataStorageFrameData
• isHidden() : gmx::OptionInfo , gmx::AbstractOptionStorage
• isInitialized() : gmx::AnalysisDataFrameLocalData< ValueType > , gmx::TrajectoryAnalysisModuleData::Impl
• isInputCompatible() : gmx::ModularSimulator
• isInputFile() : gmx::FileNameOptionInfo , gmx::FileNameOptionStorage
• isInputOutputFile() : gmx::FileNameOptionStorage , gmx::FileNameOptionInfo
• isInRange() : gmx::Range< typename >
• isInteractive() : gmx::StandardInputStream
• isLibraryFile() : gmx::FileNameOptionStorage , gmx::FileNameOptionInfo
• isMarked() : GpuEventSynchronizer
• isMultipoint() : gmx::test::AnalysisDataTestInput , gmx::internal::AnalysisDataStorageImpl , gmx::AbstractAnalysisData
• isNaN() : gmx::test::FloatingPointDifference
• isNotified() : gmx::internal::AnalysisDataStorageFrameData
• isNumCoupledConstraintsSupported() : gmx::UpdateConstrainGpu::Impl , gmx::LincsGpu
• isOutputFile() : gmx::FileNameOptionInfo , gmx::FileNameOptionStorage
• isPeriodic() : gmx::GridAxis
• isPresent() : gmx::AnalysisDataValue
• isPullDimension() : gmx::DimParams
• isReady() : GpuEventSynchronizer
• isReductionRequired() : gmx::ObservablesReducer
• isRequired() : gmx::OptionInfo , gmx::AbstractOptionStorage
• isSampleCoordStep() : gmx::Bias , gmx::BiasParams
• isSet() : gmx::AbstractOptionStorage , PreprocessingBondAtomType , gmx::AnalysisDataValue , PreprocessingAtomTypes , gmx::OptionInfo
• isStarted() : gmx::internal::AnalysisDataStorageFrameData
• issueFatalError() : gmx::ImdSession::Impl
• isThisSystem() : gmx::HardwareTopology
• isTime() : gmx::FloatOptionInfo , gmx::DoubleOptionInfo , gmx::FloatOptionStorage , gmx::DoubleOptionStorage
• isTrajectoryOption() : gmx::FileNameOptionStorage , gmx::FileNameOptionInfo
• isTrivial() : gmx::TextLineWrapper
• isType() : gmx::OptionInfo , gmx::Any
• isUpdateFreeEnergyStep() : gmx::BiasParams
• isUpdateTargetStep() : gmx::BiasParams
• isValid() : gmx::AnalysisDataFrameRef , gmx::AnalysisDataHandle , gmx::Selection , gmx::AnalysisNeighborhoodPair , DeviceStream , gmx::test::TestReferenceChecker , gmx::AnalysisDataFrameHeader
• isValidType() : gmx::FileNameOptionStorage , gmx::FileNameOptionInfo , gmx::anonymous_namespace{filenameoption.cpp}::FileTypeHandler
• isVector() : gmx::AbstractOption , gmx::AbstractOptionStorage
• isWithin() : gmx::AnalysisNeighborhoodSearch , gmx::test::FloatingPointTolerance
• iterator() : gmx::Range< typename >::iterator