- r -

• Range() : gmx::Range< typename >
• range() : gmx::AnalysisHistogramSettingsInitializer
• RangeError() : gmx::RangeError
• rank() : gmx::extents< StaticExtents > , gmx::basic_mdspan< ElementType, Extents, LayoutPolicy, AccessorPolicy > , gmx::detail::extents_analyse< R, E0, StaticExtents...> , gmx::detail::extents_analyse< R, dynamic_extent, StaticExtents...> , gmx::detail::extents_analyse< 0 >
• rank_dynamic() : gmx::detail::extents_analyse< R, E0, StaticExtents...> , gmx::detail::extents_analyse< R, dynamic_extent, StaticExtents...> , gmx::detail::extents_analyse< 0 > , gmx::extents< StaticExtents > , gmx::basic_mdspan< ElementType, Extents, LayoutPolicy, AccessorPolicy >
• rawIndex() : gmx::RangePartitioning
• rbegin() : gmx::EnumerationArray< EnumType, DataType, ArraySize > , gmx::FixedCapacityVector< typename, size_t > , gmx::ArrayRef< typename >
• RdfModuleData() : gmx::analysismodules::anonymous_namespace{rdf.cpp}::RdfModuleData
• readAll() : gmx::TextReader
• readCheckpoint() : gmx::ITemperatureCouplingImpl , gmx::VRescaleTemperatureCoupling , gmx::BerendsenTemperatureCoupling , gmx::NoseHooverTemperatureCoupling
• readCheckpointToTrxFrame() : gmx::FreeEnergyPerturbationData , gmx::ModularSimulator , gmx::StatePropagatorData
• readCommand() : gmx::ImdSession::Impl
• readDouble() : gmx::test::TestReferenceChecker
• readFileToString() : gmx::TextReader
• readFloat() : gmx::test::TestReferenceChecker
• reading() : gmx::FileIOXdrSerializer , gmx::ISerializer
• readInt32() : gmx::test::TestReferenceChecker
• readInt64() : gmx::test::TestReferenceChecker
• readInteger() : gmx::test::TestReferenceChecker
• readInternalParametersFromKvt() : gmx::DensityFittingOptions , gmx::QMMMOptions
• readLine() : gmx::StandardInputStream , gmx::TextInputFile , gmx::StringInputStream , gmx::TextReader , gmx::TextInputStream
• readNextFrame() : gmx::TrajectoryAnalysisRunnerCommon , gmx::test::EnergyFrameReader , gmx::test::TrajectoryFrameReader
• readReferenceDensityFromFile() : gmx::anonymous_namespace{densityfitting.cpp}::DensityFittingSimulationParameterSetup
• readState() : gmx::DensityFittingForceProviderState
• readString() : gmx::test::TestReferenceChecker
• readUChar() : gmx::test::TestReferenceChecker
• readVmdForces() : gmx::ImdSession::Impl
• readWriteFlags() : gmx::FileNameOption
• reasonsWhyDisabled() : gmx::SeparatePmeRanksPermitted
• receiveCoordinatesSynchronizerFromPpCudaDirect() : gmx::PmeCoordinateReceiverGpu::Impl
• receiveForceFromPme() : gmx::PmePpCommGpu , gmx::PmePpCommGpu::Impl
• redirectStringToStdin() : gmx::test::StdioTestHelper
• reduce() : gmx::ThreadedForceBuffer< ForceBufferElementType >
• reduceNumBlocks() : gmx::RangePartitioning
• reductionComplete() : gmx::ObservablesReducer
• reductionMask() : gmx::ThreadForceBuffer< ForceBufferElementType >
• referenceCoordinates() : t_oriresdata
• referenceDensity() : gmx::anonymous_namespace{densityfitting.cpp}::DensityFittingSimulationParameterSetup
• referenceDensityFileName() : gmx::DensityFittingOptions
• referencePressure() : gmx::MttkData
• ReferenceTemperatureHelper() : gmx::StatePropagatorData::ReferenceTemperatureHelper
• ReferenceTemperatureManager() : gmx::ReferenceTemperatureManager
• refId() : gmx::SelectionPosition
• refIds() : gmx::Selection
• refIndex() : gmx::AnalysisNeighborhoodPair
• refreshMassesAndCharges() : gmx::internal::SelectionData
• refreshName() : gmx::internal::SelectionData
• registerAnalysisDataset() : gmx::TrajectoryAnalysisModule
• registerAwhWithPull() : gmx::Awh
• registerBasicDataset() : gmx::TrajectoryAnalysisModule
• registerClient() : gmx::CheckpointHelperBuilder , gmx::DomDecHelperBuilder , gmx::TopologyHolder::Builder
• registerDomDecCallback() : gmx::ForceElement , gmx::FreeEnergyPerturbationData::Element , gmx::IDomDecHelperClient , gmx::TopologyHolder
• registerEnergyCallback() : gmx::IEnergySignallerClient
• registerLastStepCallback() : gmx::ILastStepSignallerClient
• registerLoggingCallback() : gmx::ILoggingSignallerClient
• registerModule() : gmx::CommandLineModuleManager , gmx::TrajectoryAnalysisCommandLineRunner
• registerModuleDirect() : gmx::ICommandLineOptionsModule
• registerModuleFactory() : gmx::ICommandLineOptionsModule
• registerNbnxmForce() : gmx::GpuForceReduction
• registerNSCallback() : gmx::INeighborSearchSignallerClient
• registerOption() : gmx::SelectionOptionManager
• registerPostStepScheduling() : gmx::ModularSimulatorAlgorithmBuilderHelper
• registerPreStepScheduling() : gmx::ModularSimulatorAlgorithmBuilderHelper
• registerPropagator() : gmx::ModularSimulatorAlgorithmBuilderHelper
• registerReferenceTemperatureUpdate() : gmx::ModularSimulatorAlgorithmBuilderHelper
• registerRvecForce() : gmx::GpuForceReduction
• registerSignallerClient() : gmx::SignallerBuilder< Signaller >
• registerStopCondition() : gmx::StopHandlerBuilder
• registerSubTopic() : gmx::AbstractCompositeHelpTopic
• registerTemperaturePressureControl() : gmx::ModularSimulatorAlgorithmBuilderHelper
• registerTrajectorySignallerCallback() : gmx::ITrajectorySignallerClient
• registerTrajectoryWriterCallback() : gmx::ITrajectoryWriterClient
• registerUpdateCallback() : gmx::ReferenceTemperatureManager
• registerWriterClient() : gmx::TrajectoryElementBuilder
• reinit() : gmx::PmePpCommGpu , gmx::PmePpCommGpu::Impl , gmx::GpuForceReduction
• reinitCoordinateReceiver() : gmx::PmeCoordinateReceiverGpu::Impl
• reinitHalo() : gmx::GpuHaloExchange
• relativeToleranceAsFloatingPoint() : gmx::test::FloatingPointTolerance
• relativeToleranceAsPrecisionDependentFloatingPoint() : gmx::test::FloatingPointTolerance
• relativeToleranceAsPrecisionDependentUlp() : gmx::test::FloatingPointTolerance
• relativeToleranceAsUlp() : gmx::test::FloatingPointTolerance
• removeCalculation() : gmx::PositionCalculationCollection::Impl
• removeFiles() : gmx::test::TestFileManager::Impl
• removeMolecularShifts() : gmx::ImdSession::Impl
• removeTerminatingLineFeed() : gmx::anonymous_namespace{exceptions.cpp}::MessageWriterString
• rend() : gmx::FixedCapacityVector< typename, size_t > , gmx::ArrayRef< typename >
• renumberTypes() : PreprocessingAtomTypes
• reopenRegionCpu() : DDBalanceRegionHandler
• RepeatingOptionSection() : gmx::RepeatingOptionSection< T >
• RepeatingOptionSectionHandle() : gmx::RepeatingOptionSectionHandle< T >
• RepeatingOptionSectionStorage() : gmx::RepeatingOptionSectionStorage< T >
• replaceLinks() : gmx::HelpWriterContext::Impl
• reportGpuUsage() : gmx::GpuTaskAssignments
• representativeItem() : gmx::UnionFinder
• representativeValue() : gmx::MappedUnionFinder
• requestFrame() : gmx::test::TopologyManager
• requestOptionDelayedParsing() : gmx::SelectionOptionManager
• RequestsClearer() : gmx::SelectionOptionManager::Impl::RequestsClearer
• requestStorage() : gmx::AbstractAnalysisData , gmx::AnalysisDataStorage
• requestStorageInternal() : gmx::AbstractAnalysisData
• requestUnsetRequiredOptions() : gmx::SelectionOptionManager::Impl
• required() : gmx::OptionTemplate< T, U >
• required_span_size() : gmx::layout_right::mapping< Extents >
• requiredTopologyInfoForType() : gmx::PositionCalculationCollection
• requiredTopologyProperties() : gmx::SelectionTreeElement , gmx::SelectionCollection
• requiredTopologyPropertiesForPositionType() : gmx::SelectionCollection::Impl
• requireReduction() : gmx::ObservablesReducer::Impl
• requiresIndexGroups() : gmx::SelectionCollection , gmx::SelectionTreeElement
• resampleDoubleBinWidth() : gmx::AbstractAverageHistogram
• reserve() : gmx::internal::EnumIndexStore< EnumType > , gmx::OptionValueStoreNull< T > , anonymous_namespace{evaluate.cpp}::MempoolSelelemReserver , anonymous_namespace{evaluate.cpp}::MempoolGroupReserver , gmx::IOptionValueStore< T >
• reserveChargeA() : gmx::MDAtoms
• reserveChargeB() : gmx::MDAtoms
• reserveWithPadding() : gmx::PaddedVector< T, Allocator >
• reset() : GpuEventSynchronizer , GpuRegionTimerImpl , gmx::ExponentialDistribution< RealType > , gmx::GammaDistribution< RealType > , gmx::NormalDistribution< RealType > , gmx::TabulatedNormalDistribution< RealType, tableBits > , gmx::UniformIntDistribution< IntType > , gmx::UniformRealDistribution< RealType > , gmx::AnalysisNeighborhoodSearch , GpuRegionTimerWrapper< GpuRegionTimerImpl >
• resetCounters() : gmx::ResetHandler
• ResetHandler() : gmx::ResetHandler
• resetIfFullyConsumed() : GpuEventSynchronizer
• residueName() : AtomProxy
• residueNumber() : AtomProxy
• resize() : ForceHelperBuffers , gmx::MultiDimArray< TContainer, Extents, LayoutPolicy > , gmx::ForceBuffers
• resizeBufferAndClearMask() : gmx::ThreadForceBuffer< ForceBufferElementType >
• resizeChargeA() : gmx::MDAtoms
• resizeChargeB() : gmx::MDAtoms
• resizeCoordinateBuffer() : nbnxn_atomdata_t
• resizeForceBuffers() : nbnxn_atomdata_t
• resizeWithPadding() : gmx::PaddedVector< T, Allocator >
• resolveExternalGroups() : gmx::SelectionCollection::Impl
• resolveIndexGroupReference() : gmx::SelectionTreeElement
• restart() : gmx::ThreeFry2x64General< rounds, internalCounterBits >
• restoreCheckpointState() : gmx::MttkData , gmx::EnergyData::Element , gmx::ICheckpointHelperClient , gmx::ExpandedEnsembleElement , gmx::FreeEnergyPerturbationData::Element , gmx::ParrinelloRahmanBarostat , gmx::PullElement , gmx::StatePropagatorData::Element , gmx::FirstOrderPressureCoupling , gmx::NoseHooverChainsData , gmx::VelocityScalingTemperatureCoupling
• restoreFromHistory() : gmx::CoordState , gmx::CorrelationBlockData , gmx::BiasState , gmx::HistogramSize , gmx::CorrelationTensor
• restoreOriginalPositions() : gmx::internal::SelectionData
• restoreStateFromHistory() : gmx::Bias , gmx::Awh , gmx::CorrelationGrid
• RestraintForceProvider() : gmx::RestraintForceProvider
• RestraintManager() : gmx::RestraintManager
• RestraintMDModule() : gmx::RestraintMDModule
• RestraintMDModuleImpl() : gmx::RestraintMDModuleImpl
• result() : gmx::anonymous_namespace{helpwritercontext.cpp}::WrapperToString , gmx::anonymous_namespace{helpwritercontext.cpp}::WrapperToVector , gmx::anonymous_namespace{exceptions.cpp}::MessageWriterString
• ReverseTopOptions() : ReverseTopOptions
• rmsd() : gmx::Constraints
• rootChecker() : gmx::test::TestReferenceData , gmx::test::CommandLineTestBase
• rootElement() : gmx::internal::SelectionData
• RootHelpTopic() : gmx::anonymous_namespace{cmdlinehelpmodule.cpp}::RootHelpTopic
• rootObject() : gmx::KeyValueTreeBuilder
• rootSection() : gmx::Options
• rotateBuffer() : gmx::internal::AnalysisDataStorageImpl
• roundRange() : gmx::AnalysisHistogramSettingsInitializer
• rowCount() : gmx::AbstractAnalysisArrayData
• RstParagraphIterator() : gmx::RstParagraphIterator
• rules() : gmx::KeyValueTreeTransformRulesScoped
• run() : anonymous_namespace{minimize.cpp}::EnergyEvaluator , gmx::DomDecHelper , gmx::ISimulator , gmx::CheckpointHelper , gmx::ICommandLineOptionsModule , anonymous_namespace{legacymodules.cpp}::ObsoleteToolModule , gmx::ImdSession::Impl , gmx::ICommandLineModule , gmx::anonymous_namespace{cmdlinemodulemanager.cpp}::CMainCommandLineModule , gmx::LegacySimulator , gmx::CommandLineHelpModule , gmx::PmeLoadBalanceHelper , gmx::CommandLineModuleManager , gmx::ModularSimulator
• runAsMain() : gmx::TrajectoryAnalysisCommandLineRunner , gmx::ICommandLineOptionsModule , gmx::TrajectoryAnalysisCommandLineRunner
• runAsMainCMain() : gmx::CommandLineModuleManager
• runAsMainCMainWithSettings() : gmx::CommandLineModuleManager
• runAsMainSingleModule() : gmx::CommandLineModuleManager
• runExitsNormallyTest() : gmx::test::MultiSimTest
• runFirstMdrun() : gmx::test::TerminationHelper
• runGrompp() : gmx::test::MultiSimTest
• runMaxhTest() : gmx::test::MultiSimTest
• runModuleDirect() : gmx::test::CommandLineTestHelper
• runModuleFactory() : gmx::test::CommandLineTestHelper
• runSecondMdrun() : gmx::test::TerminationHelper
• runSecondMdrunWithNoAppend() : gmx::test::TerminationHelper
• runTest() : gmx::test::anonymous_namespace{tpitest.cpp}::TpiTest , gmx::test::AbstractTrajectoryAnalysisModuleTestFixture , gmx::test::ModuleTest , gmx::anonymous_namespace{shake.cpp}::ShakeTest , gmx::test::anonymous_namespace{pmebsplinetest.cpp}::PmeBSplineModuliTest , anonymous_namespace{grompp.cpp}::GromppTest
• runTestMolecule() : gmx::test::anonymous_namespace{com.cpp}::COMInPlaceTest
• runTestResidue() : gmx::test::anonymous_namespace{com.cpp}::COMInPlaceTest
• rvec_array() : gmx::PaddedVector< T, Allocator >
• RVecMatcher() : gmx::test::RVecMatcher< FloatType >