Here is a list of all documented file members with links to the documentation:

- c -

• c_binarySupportsGpus : device_information.h
• c_bondedKernelFlavorStrings : bonded.cpp , bonded.h
• c_canEmbedBuffers : gputraits_ocl.h , gputraits_sycl.h
• c_canSerializeDeviceInformation : device_information.h
• c_checkTurnDlbOffInterval : dlb.h
• c_checkTurnDlbOnInterval : dlb.h
• c_clSize : nbnxm_cuda_types.h
• c_comBufferStride : pull_internal.h
• c_cudaFullWarpMask : sycl_kernel_utils.h
• c_cylinderBufferStride : pull_internal.h
• c_debugTimerState : gpuregiontimer.h
• c_deviceStateString : device_information.h
• c_gatherMaxWarpsPerBlock : pme_gpu_constants.h
• c_gpuNumClusterPerCell : pairlistparams.h
• c_gpuNumClusterPerCellX : pairlistparams.h
• c_gpuNumClusterPerCellY : pairlistparams.h
• c_gpuNumClusterPerCellZ : pairlistparams.h
• c_maxBufSize : symtab.cpp
• c_maxSpacingScaling : pme_load_balancing.cpp
• c_nbnxnCpuIClusterSize : pairlistparams.h
• c_nbnxnDynamicListPruningMinLifetime : pairlist_tuning.cpp
• c_nbnxnGpuClusterpairSplit : pairlistparams.h
• c_nbnxnGpuClusterSize : pairlistparams.h
• c_nbnxnGpuExclSize : pairlistparams.h
• c_nbnxnGpuRollingListPruningInterval : pairlist_tuning.cpp
• c_nbnxnListSizeFactorCpu : pairlist_tuning.cpp
• c_nbnxnListSizeFactorGPU : pairlist_tuning.cpp
• c_nbnxnListSizeFactorIntelXeonPhi : pairlist_tuning.cpp
• c_nbnxnListSizeFactorMargin : pairlist_tuning.cpp
• c_numFirstTuningIntervalSkip : pme_load_balancing.cpp
• c_numFirstTuningIntervalSkipWithSepPme : pme_load_balancing.cpp
• c_numPostSwitchTuningIntervalSkip : pme_load_balancing.cpp
• c_packX4 : atomdata.h
• c_packX8 : atomdata.h
• c_pbcTypeNames : pbc.cpp
• c_pmeAtomDataBlockSize : pme_gpu_internal.cpp
• c_pmeGpuOrder : pme_gpu_constants.h
• c_pmeGpuPerformanceAtomLimit : pme_gpu_internal.cpp
• c_probabilityCutoff : replicaexchange.cpp
• c_pruneKernelJ4Concurrency : gpu_types_common.h
• c_pullGroupPbcMargin : pull.h
• c_pullGroupSmallGroupThreshold : pull.h
• c_pullMaxNumLocalAtomsSingleThreaded : pull_internal.h
• c_skipNeutralAtoms : pme_gpu_constants.h
• c_solveMaxWarpsPerBlock : pme_gpu_constants.h
• c_spreadMaxWarpsPerBlock : pme_gpu_constants.h
• c_startupTimeDelay : pme_load_balancing.cpp
• c_trimSize : symtab.cpp
• c_useDelayedWait : pme_pp.cpp
• c_virialAndEnergyCount : pme_gpu_constants.h
• c_xStride2xNN : pairlist_simd_2xmm.h
• c_xStride4xN : pairlist_simd_4xm.h
• calc_bonded_reduction_mask() : manage_threading.cpp
• calc_box_center() : pbc.cpp
• calc_compact_unitcell_vertices() : pbc.cpp
• calc_cumulatives() : gmx_wham.cpp
• calc_disres_R_6() : disre.h
• calc_ewaldcoeff_lj() : ewald_utils.h
• calc_ewaldcoeff_q() : ewald_utils.h
• calc_initial_lb_coeffs() : pme.cpp
• calc_lll() : ewald.cpp
• calc_next_lb_coeffs() : pme.cpp
• calc_orires_dev() : orires.h
• calc_pos_av_stddev() : box.cpp
• calc_profile() : gmx_wham.cpp
• calc_shifts() : pbc.cpp
• calc_triclinic_images() : pbc.cpp
• calc_z() : gmx_wham.cpp
• calcBondedForces() : listed_forces.cpp
• calcIntegratedAutocorrelationTimes() : gmx_wham.cpp
• calcQuasiHarmonicEntropy() : thermochemistry.h
• calcRotationalEntropy() : thermochemistry.h
• calcSchlitterEntropy() : thermochemistry.h
• calcTranslationalEntropy() : thermochemistry.h
• calculateAndStoreGridForces() : pme_gather_sycl.cpp
• calculateSimpleBond() : bonded.cpp , bonded.h
• calculateSplines() : pme_gpu_calculate_splines_sycl.h
• calcVibrationalHeatCapacity() : thermochemistry.h
• calcVibrationalInternalEnergy() : thermochemistry.h
• calcZeroPointEnergy() : thermochemistry.h
• can_use_base() : poscalc.cpp
• canPerformDeviceDetection() : device_management.h , device_management_common.cpp
• CFRAC_NONE : selectionenums.h
• CFRAC_SOLIDANGLE : selectionenums.h
• change_dd_cutoff() : domdec.h
• Channel : md_enums.h
• ChannelHistory : swapcoords.cpp
• ChannelString : swapcoords.cpp
• check_atomtype() : sm_simple.cpp
• check_box() : pbc.cpp
• check_callbacks() : selmethod.cpp
• check_charge() : sm_simple.cpp
• check_index_consistency() : partition.cpp
• check_link() : makebondedlinks.cpp
• check_method() : selmethod.cpp
• check_modifier() : selmethod.cpp
• check_molecules() : sm_simple.cpp
• check_multi_int() : multisim.cpp , multisim.h
• check_multi_int64() : multisim.cpp , multisim.h
• check_params() : selmethod.cpp
• check_pdbinfo() : sm_simple.cpp
• check_resource_division_efficiency() : resourcedivision.cpp , resourcedivision.h
• check_screw_box() : utility.cpp , utility.h
• CHECK_SEL : parser_internal.h
• check_swap_groups() : swapcoords.cpp
• checkAndUpdateHardwareOptions() : resourcedivision.cpp , resourcedivision.h
• checkAndUpdateRequestedNumOpenmpThreads() : resourcedivision.cpp , resourcedivision.h
• checkDevice() : device_management_sycl.cpp
• checkDeviceBuffer() : devicebuffer_ocl.h , devicebuffer_sycl.h
• checkForSeparatePmeRanks() : domdec_setup.cpp , domdec_setup.h
• checkForValidRankCountRequests() : domdec_setup.cpp , domdec_setup.h
• checkReactionCoordinateCovered() : gmx_wham.cpp
• checkRequiredWarpSize() : pme_gpu_program_impl_ocl.cpp
• cl_nbparam_params_t : nbnxm_ocl_types.h
• CL_USE_DEPRECATED_OPENCL_1_2_APIS : gmxopencl.h
• CLANG_DIAGNOSTIC_IGNORE : basedefinitions.h
• CLANG_DIAGNOSTIC_RESET : basedefinitions.h
• clear_dd_cycle_counts() : dlbtiming.h
• clear_fshift() : kernel_common.cpp , kernel_common.h
• clear_pull_forces() : pull.h
• clear_surface_points() : sm_insolidangle.cpp
• clearBufferAll() : kernel_common.cpp
• clearBufferFlagged() : kernel_common.cpp
• clearCommSetupData() : partition.cpp
• clearDDStateIndices() : partition.cpp
• clearDeviceBufferAsync() : devicebuffer_ocl.h , devicebuffer_sycl.h
• clearForceBuffer() : kernel_common.cpp , kernel_common.h
• clearModificationBlock() : hackblock.h
• close_symtab() : symtab.h
• ClusterDistanceKernelType : clusterdistancekerneltype.h
• cmap_dihs() : bonded.cpp , bonded.h
• CMP_ALLOCINT : sm_compare.cpp
• CMP_ALLOCREAL : sm_compare.cpp
• cmp_bool() : compare.h
• cmp_double() : compare.h
• CMP_DYNAMICVAL : sm_compare.cpp
• CMP_EQUAL : sm_compare.cpp
• cmp_float() : compare.h
• CMP_GEQ : sm_compare.cpp
• CMP_GTR : sm_compare.cpp
• cmp_int() : sm_same.cpp , compare.h
• cmp_int64() : compare.h
• CMP_INVALID : sm_compare.cpp
• CMP_LEQ : sm_compare.cpp
• CMP_LESS : sm_compare.cpp
• CMP_NEQ : sm_compare.cpp
• cmp_range() : params.cpp
• cmp_real() : compare.h
• CMP_REALVAL : sm_compare.cpp
• CMP_SINGLEVAL : sm_compare.cpp
• cmp_str() : sm_same.cpp , compare.h
• cmp_uc() : compare.h
• cmp_us() : compare.h
• cmpEnum() : compare.h
• CombinationRule : md_enums.h
• combine_idef() : localtopology.cpp
• comm_box_frac() : domdec_setup.cpp , domdec_setup.h
• comm_cost_est() : domdec_setup.cpp
• comm_dd_ns_cell_sizes() : partition.cpp
• comm_pme_cost_vol() : domdec_setup.cpp
• CommandEvent : gputraits.h , gputraits_ocl.h , gputraits_sycl.h
• communicate_group_positions() : groupcoord.h
• communicateGpuHaloCoordinates() : domdec.h
• communicateGpuHaloForces() : domdec.h
• comp_state() : state.h
• compact_unitcell_edges() : pbc.cpp
• comparison_type() : sm_compare.cpp
• comparison_type_str() : sm_compare.cpp
• Compartment : md_enums.h
• compartment_contains_atom() : swapcoords.cpp
• Compatible : device_information.h
• complexConjugatMult() : crosscorr.cpp
• CompStr : swapcoords.cpp
• compute_factors_cbtdihs() : restcbt.cpp , restcbt.h
• compute_factors_restangles() : restcbt.cpp , restcbt.h
• compute_factors_restrdihs() : restcbt.cpp , restcbt.h
• computeAverageForce() : gmx_wham.cpp
• computeEnergy() : bonded.h
• computeEnergyOrVirial() : bonded.h
• computeVirial() : bonded.h
• ComRemovalAlgorithm : md_enums.h
• conrmsd_nm : energyoutput.cpp
• ConstraintAlgorithm : md_enums.h
• constructGpuHaloExchange() : domdec.h
• CONTINUE : cstringutil.h
• continue_pme_loadbal() : pme_load_balancing.cpp
• continuing() : cstringutil.h
• convert_const_values() : params.cpp
• convert_int_real() : sm_compare.cpp
• convert_real_int() : sm_compare.cpp
• convert_value() : params.cpp
• convert_values() : params.cpp
• convertOldToNewGroupFormat() : swapcoords.cpp
• convertPmeGridToFftGrid() : pme_gpu_grid.h , pme_gpu_sycl_stubs.cpp , pme_gpu_ocl_stubs.cpp
• coordinates1000 : bench_coords.h
• copy_pullgrp_to_synthwindow() : gmx_wham.cpp
• copy_rvec_to_nbat_real() : atomdata.h
• copyBetweenDeviceBuffers() : devicebuffer_sycl.h , devicebuffer_ocl.h
• copyFromDeviceBuffer() : devicebuffer_ocl.h , devicebuffer_sycl.h
• copyIndicesToGroup() : swapcoords.cpp
• copyModificationBlocks() : hackblock.h
• copyPreprocessResidues() : hackblock.h
• copyToDeviceBuffer() : devicebuffer_ocl.h , devicebuffer_sycl.h
• correct_box() : pbc.cpp
• correct_box_elem() : pbc.cpp
• CoulombInteractionType : md_enums.h
• CoulombKernelType : kernel_common.h
• Count : gpu_utils.h , atomdata.h , device_stream.h , bonded.h , device_information.h , pme_gpu_constants.h , device_information.h
• CPU : pme.h
• CpuPlainC : clusterdistancekerneltype.h
• CpuSimd_2xMM : clusterdistancekerneltype.h
• CpuSimd_4xM : clusterdistancekerneltype.h
• create_simple_base() : poscalc.cpp
• create_subexpression_name() : compiler.cpp
• create_synthetic_histo() : gmx_wham.cpp
• cross_corr() : crosscorr.h , crosscorr.cpp
• cross_corr_low() : crosscorr.cpp
• CutoffScheme : md_enums.h