Gromacs
2022.5
|
File in src/gromacs | Includes file in src/include |
---|---|
math / 3dtransforms.cpp | gmxpre.h |
analysisdata / abstractdata.cpp | gmxpre.h |
options / abstractoption.cpp | gmxpre.h |
options / tests / abstractoptionstorage.cpp | gmxpre.h |
options / abstractsection.cpp | gmxpre.h |
mdspan / tests / accessor_policy.cpp | gmxpre.h |
gmxpreprocess / add_par.cpp | gmxpre.h |
utility / alignedallocator.cpp | gmxpre.h |
utility / tests / alignedallocator.cpp | gmxpre.h |
gmxana / anadih.cpp | gmxpre.h |
analysisdata / tests / analysisdata.cpp | gmxpre.h |
analysisdata / analysisdata.cpp | gmxpre.h |
trajectoryanalysis / analysismodule.cpp | gmxpre.h |
trajectoryanalysis / analysissettings.cpp | gmxpre.h |
trajectoryanalysis / tests / angle.cpp | gmxpre.h |
trajectoryanalysis / modules / angle.cpp | gmxpre.h |
gmxana / angle_correction.cpp | gmxpre.h |
utility / any.cpp | gmxpre.h |
analysisdata / tests / arraydata.cpp | gmxpre.h |
analysisdata / arraydata.cpp | gmxpre.h |
utility / tests / arrayref.cpp | gmxpre.h |
math / tests / arrayrefwithpadding.cpp | gmxpre.h |
nbnxm / atomdata.cpp | gmxpre.h |
domdec / atomdistribution.cpp | gmxpre.h |
topology / atomprop.cpp | gmxpre.h |
topology / atoms.cpp | gmxpre.h |
topology / atomsbuilder.cpp | gmxpre.h |
correlationfunctions / tests / autocorr.cpp | gmxpre.h |
correlationfunctions / autocorr.cpp | gmxpre.h |
analysisdata / tests / average.cpp | gmxpre.h |
analysisdata / modules / average.cpp | gmxpre.h |
applied_forces / awh / awh.cpp | gmxpre.h |
mdtypes / awh_history.cpp | gmxpre.h |
applied_forces / awh / tests / awh_setup.cpp | gmxpre.h |
applied_forces / awh / tests / awh_setup.h | gmxpre.h |
simd / tests / base.cpp | gmxpre.h |
utility / basenetwork.cpp | gmxpre.h |
utility / baseversion.cpp | gmxpre.h |
options / basicoptions.cpp | gmxpre.h |
options / behaviorcollection.cpp | gmxpre.h |
nbnxm / benchmark / bench_setup.cpp | gmxpre.h |
nbnxm / benchmark / bench_system.cpp | gmxpre.h |
applied_forces / awh / tests / bias.cpp | gmxpre.h |
applied_forces / awh / bias.cpp | gmxpre.h |
applied_forces / awh / tests / bias_fep_lambda_state.cpp | gmxpre.h |
applied_forces / awh / tests / biasgrid.cpp | gmxpre.h |
applied_forces / awh / biasgrid.cpp | gmxpre.h |
applied_forces / awh / biasparams.cpp | gmxpre.h |
applied_forces / awh / tests / biassharing.cpp | gmxpre.h |
applied_forces / awh / biassharing.cpp | gmxpre.h |
applied_forces / awh / tests / biasstate.cpp | gmxpre.h |
applied_forces / awh / biasstate.cpp | gmxpre.h |
applied_forces / awh / biaswriter.cpp | gmxpre.h |
utility / binaryinformation.cpp | gmxpre.h |
gmxana / binsearch.cpp | gmxpre.h |
utility / tests / bitmask128.cpp | gmxpre.h |
utility / tests / bitmask32.cpp | gmxpre.h |
utility / tests / bitmask64.cpp | gmxpre.h |
topology / block.cpp | gmxpre.h |
listed_forces / tests / bonded.cpp | gmxpre.h |
listed_forces / bonded.cpp | gmxpre.h |
simd / tests / bootstrap_loadstore.cpp | gmxpre.h |
domdec / box.cpp | gmxpre.h |
mdlib / boxdeformation.cpp | gmxpre.h |
pbcutil / boxutilities.cpp | gmxpre.h |
mdlib / broadcaststructs.cpp | gmxpre.h |
coordinateio / tests / builder.cpp | gmxpre.h |
mdlib / tests / calc_verletbuf.cpp | gmxpre.h |
mdlib / calc_verletbuf.cpp | gmxpre.h |
fft / calcgrid.cpp | gmxpre.h |
gmxpreprocess / calch.cpp | gmxpre.h |
mdlib / calcmu.cpp | gmxpre.h |
ewald / calculate_spline_moduli.cpp | gmxpre.h |
mdlib / tests / calcvir.cpp | gmxpre.h |
mdlib / calcvir.cpp | gmxpre.h |
domdec / cellsizes.cpp | gmxpre.h |
selection / centerofmass.cpp | gmxpre.h |
tools / check.cpp | gmxpre.h |
fileio / tests / checkpoint.cpp | gmxpre.h |
fileio / checkpoint.cpp | gmxpre.h |
mdtypes / tests / checkpointdata.cpp | gmxpre.h |
mdtypes / checkpointdata.cpp | gmxpre.h |
mdlib / checkpointhandler.cpp | gmxpre.h |
modularsimulator / checkpointhelper.cpp | gmxpre.h |
gpu_utils / tests / clfftinitializer.cpp | gmxpre.h |
gpu_utils / clfftinitializer.cpp | gmxpre.h |
gmxana / cluster_methods.cpp | gmxpre.h |
trajectoryanalysis / tests / clustsize.cpp | gmxpre.h |
gmxana / cmat.cpp | gmxpre.h |
commandline / cmdlinehelpcontext.cpp | gmxpre.h |
commandline / tests / cmdlinehelpmodule.cpp | gmxpre.h |
commandline / cmdlinehelpmodule.cpp | gmxpre.h |
commandline / tests / cmdlinehelpwriter.cpp | gmxpre.h |
commandline / cmdlinehelpwriter.cpp | gmxpre.h |
commandline / cmdlineinit.cpp | gmxpre.h |
commandline / cmdlinemodule.cpp | gmxpre.h |
commandline / tests / cmdlinemodulemanager.cpp | gmxpre.h |
commandline / cmdlinemodulemanager.cpp | gmxpre.h |
commandline / tests / cmdlinemodulemanagertest.cpp | gmxpre.h |
commandline / cmdlineoptionsmodule.cpp | gmxpre.h |
commandline / tests / cmdlineparser.cpp | gmxpre.h |
commandline / cmdlineparser.cpp | gmxpre.h |
commandline / tests / cmdlineprogramcontext.cpp | gmxpre.h |
commandline / cmdlineprogramcontext.cpp | gmxpre.h |
trajectoryanalysis / cmdlinerunner.cpp | gmxpre.h |
trajectoryanalysis / tests / cmdlinerunner.cpp | gmxpre.h |
domdec / collect.cpp | gmxpre.h |
pbcutil / tests / com.cpp | gmxpre.h |
pbcutil / com.cpp | gmxpre.h |
mimic / communicator.cpp | gmxpre.h |
mimic / communicator_stub.cpp | gmxpre.h |
utility / compare.cpp | gmxpre.h |
selection / compiler.cpp | gmxpre.h |
modularsimulator / compositesimulatorelement.cpp | gmxpre.h |
mdlib / compute_io.cpp | gmxpre.h |
modularsimulator / computeglobalselement.cpp | gmxpre.h |
domdec / computemultibodycutoffs.cpp | gmxpre.h |
fileio / tests / confio.cpp | gmxpre.h |
fileio / confio.cpp | gmxpre.h |
gmxlib / conformation_utilities.cpp | gmxpre.h |
mdlib / tests / constr.cpp | gmxpre.h |
mdlib / constr.cpp | gmxpre.h |
modularsimulator / constraintelement.cpp | gmxpre.h |
mdlib / constraintrange.cpp | gmxpre.h |
mdlib / tests / constrtestdata.cpp | gmxpre.h |
mdlib / tests / constrtestrunners.cpp | gmxpre.h |
mdlib / tests / constrtestrunners_gpu.cpp | gmxpre.h |
tools / tests / convert-tpr.cpp | gmxpre.h |
tools / convert_tpr.cpp | gmxpre.h |
trajectoryanalysis / tests / convert_trj.cpp | gmxpre.h |
trajectoryanalysis / modules / convert_trj.cpp | gmxpre.h |
gmxpreprocess / convparm.cpp | gmxpre.h |
utility / coolstuff.cpp | gmxpre.h |
coordinateio / coordinatefile.cpp | gmxpre.h |
math / tests / coordinatetransformation.cpp | gmxpre.h |
math / coordinatetransformation.cpp | gmxpre.h |
applied_forces / awh / coordstate.cpp | gmxpre.h |
correlationfunctions / tests / correlationdataset.cpp | gmxpre.h |
applied_forces / awh / correlationgrid.cpp | gmxpre.h |
applied_forces / awh / correlationhistory.cpp | gmxpre.h |
applied_forces / awh / correlationtensor.cpp | gmxpre.h |
mdlib / coupling.cpp | gmxpre.h |
hardware / tests / cpuinfo.cpp | gmxpre.h |
hardware / cpuinfo.cpp | gmxpre.h |
correlationfunctions / crosscorr.cpp | gmxpre.h |
utility / cstringutil.cpp | gmxpre.h |
utility / tests / cstringutil.cpp | gmxpre.h |
tables / cubicsplinetable.cpp | gmxpre.h |
timing / cyclecounter.cpp | gmxpre.h |
utility / datafilefinder.cpp | gmxpre.h |
analysisdata / dataframe.cpp | gmxpre.h |
analysisdata / datamodule.cpp | gmxpre.h |
analysisdata / datamodulemanager.cpp | gmxpre.h |
analysisdata / dataproxy.cpp | gmxpre.h |
analysisdata / datastorage.cpp | gmxpre.h |
analysisdata / tests / datatest.cpp | gmxpre.h |
taskassignment / decidegpuusage.cpp | gmxpre.h |
taskassignment / decidesimulationworkload.cpp | gmxpre.h |
utility / tests / defaultinitializationallocator.cpp | gmxpre.h |
gmxana / dens_filter.cpp | gmxpre.h |
math / tests / densityfit.cpp | gmxpre.h |
math / densityfit.cpp | gmxpre.h |
applied_forces / densityfitting / tests / densityfitting.cpp | gmxpre.h |
applied_forces / densityfitting / densityfitting.cpp | gmxpre.h |
applied_forces / densityfitting / tests / densityfittingamplitudelookup.cpp | gmxpre.h |
applied_forces / densityfitting / densityfittingamplitudelookup.cpp | gmxpre.h |
math / tests / densityfittingforce.cpp | gmxpre.h |
math / densityfittingforce.cpp | gmxpre.h |
applied_forces / densityfitting / tests / densityfittingforceprovider.cpp | gmxpre.h |
applied_forces / densityfitting / densityfittingforceprovider.cpp | gmxpre.h |
applied_forces / densityfitting / tests / densityfittingoptions.cpp | gmxpre.h |
applied_forces / densityfitting / densityfittingoptions.cpp | gmxpre.h |
applied_forces / densityfitting / densityfittingoutputprovider.cpp | gmxpre.h |
applied_forces / densityfitting / densityfittingparameters.cpp | gmxpre.h |
hardware / detecthardware.cpp | gmxpre.h |
gpu_utils / tests / device_availability.cpp | gmxpre.h |
gpu_utils / tests / device_buffer.cpp | gmxpre.h |
gpu_utils / device_context.cpp | gmxpre.h |
gpu_utils / device_context_ocl.cpp | gmxpre.h |
gpu_utils / device_context_sycl.cpp | gmxpre.h |
hardware / tests / device_management.cpp | gmxpre.h |
hardware / device_management.cpp | gmxpre.h |
hardware / device_management_common.cpp | gmxpre.h |
hardware / device_management_ocl.cpp | gmxpre.h |
hardware / device_management_sycl.cpp | gmxpre.h |
gpu_utils / device_stream.cpp | gmxpre.h |
gpu_utils / tests / device_stream_manager.cpp | gmxpre.h |
gpu_utils / device_stream_manager.cpp | gmxpre.h |
gpu_utils / device_stream_ocl.cpp | gmxpre.h |
gpu_utils / device_stream_sycl.cpp | gmxpre.h |
gpu_utils / devicebuffer_sycl.cpp | gmxpre.h |
gpu_utils / tests / devicetransfers.cpp | gmxpre.h |
gpu_utils / tests / devicetransfers_ocl.cpp | gmxpre.h |
gpu_utils / tests / devicetransfers_sycl.cpp | gmxpre.h |
mdtypes / df_history.cpp | gmxpre.h |
utility / directoryenumerator.cpp | gmxpre.h |
mdlib / dispersioncorrection.cpp | gmxpre.h |
analysisdata / modules / displacement.cpp | gmxpre.h |
listed_forces / disre.cpp | gmxpre.h |
trajectoryanalysis / tests / distance.cpp | gmxpre.h |
trajectoryanalysis / modules / distance.cpp | gmxpre.h |
domdec / distribute.cpp | gmxpre.h |
domdec / dlb.cpp | gmxpre.h |
domdec / dlbtiming.cpp | gmxpre.h |
gmxana / dlist.cpp | gmxpre.h |
math / do_fit.cpp | gmxpre.h |
math / tests / dofit.cpp | gmxpre.h |
domdec / domdec.cpp | gmxpre.h |
domdec / domdec_constraints.cpp | gmxpre.h |
domdec / domdec_network.cpp | gmxpre.h |
domdec / domdec_setup.cpp | gmxpre.h |
domdec / domdec_specatomcomm.cpp | gmxpre.h |
domdec / domdec_vsite.cpp | gmxpre.h |
modularsimulator / domdechelper.cpp | gmxpre.h |
tools / dump.cpp | gmxpre.h |
tools / tests / dump.cpp | gmxpre.h |
domdec / dump.cpp | gmxpre.h |
mdlib / tests / ebin.cpp | gmxpre.h |
mdlib / ebin.cpp | gmxpre.h |
gmxpreprocess / tests / editconf.cpp | gmxpre.h |
gmxpreprocess / editconf.cpp | gmxpre.h |
essentialdynamics / edsam.cpp | gmxpre.h |
linearalgebra / eigensolver.cpp | gmxpre.h |
gmxana / eigio.cpp | gmxpre.h |
applied_forces / tests / electricfield.cpp | gmxpre.h |
applied_forces / electricfield.cpp | gmxpre.h |
tools / eneconv.cpp | gmxpre.h |
mdlib / enerdata_utils.cpp | gmxpre.h |
modularsimulator / energydata.cpp | gmxpre.h |
mdlib / tests / energydrifttracker.cpp | gmxpre.h |
mdlib / energydrifttracker.cpp | gmxpre.h |
trajectory / energyframe.cpp | gmxpre.h |
mdtypes / energyhistory.cpp | gmxpre.h |
mdlib / tests / energyoutput.cpp | gmxpre.h |
mdlib / energyoutput.cpp | gmxpre.h |
gmxana / tests / entropy.cpp | gmxpre.h |
utility / tests / enumerationhelpers.cpp | gmxpre.h |
fileio / enxio.cpp | gmxpre.h |
utility / errorcodes.cpp | gmxpre.h |
utility / errorformat.cpp | gmxpre.h |
fileio / espio.cpp | gmxpre.h |
selection / evaluate.cpp | gmxpre.h |
ewald / ewald.cpp | gmxpre.h |
ewald / ewald_utils.cpp | gmxpre.h |
utility / exceptions.cpp | gmxpre.h |
topology / exclusionblocks.cpp | gmxpre.h |
topology / tests / exclusionblocks.cpp | gmxpre.h |
mdlib / tests / expanded.cpp | gmxpre.h |
mdlib / expanded.cpp | gmxpre.h |
mdlib / expanded_internal.cpp | gmxpre.h |
modularsimulator / expandedensembleelement.cpp | gmxpre.h |
correlationfunctions / tests / expfit.cpp | gmxpre.h |
correlationfunctions / expfit.cpp | gmxpre.h |
random / tests / exponentialdistribution.cpp | gmxpre.h |
math / tests / exponentialmovingaverage.cpp | gmxpre.h |
math / exponentialmovingaverage.cpp | gmxpre.h |
mdspan / tests / extensions.cpp | gmxpre.h |
mdspan / tests / extents.cpp | gmxpre.h |
trajectoryanalysis / tests / extract_cluster.cpp | gmxpre.h |
trajectoryanalysis / modules / extract_cluster.cpp | gmxpre.h |
utility / fatalerror.cpp | gmxpre.h |
gmxpreprocess / fflibutil.cpp | gmxpre.h |
fft / tests / fft.cpp | gmxpre.h |
fft / fft.cpp | gmxpre.h |
fft / fft5d.cpp | gmxpre.h |
fft / fft_fftpack.cpp | gmxpre.h |
fft / fft_fftw3.cpp | gmxpre.h |
fft / fft_mkl.cpp | gmxpre.h |
fft / tests / fft_mpi.cpp | gmxpre.h |
fileio / tests / fileioxdrserializer.cpp | gmxpre.h |
fileio / tests / filemd5.cpp | gmxpre.h |
options / tests / filenameoption.cpp | gmxpre.h |
options / filenameoption.cpp | gmxpre.h |
options / tests / filenameoptionmanager.cpp | gmxpre.h |
options / filenameoptionmanager.cpp | gmxpre.h |
commandline / tests / filenm.cpp | gmxpre.h |
commandline / filenm.cpp | gmxpre.h |
utility / fileredirector.cpp | gmxpre.h |
utility / filestream.cpp | gmxpre.h |
fileio / filetypes.cpp | gmxpre.h |
taskassignment / findallgputasks.cpp | gmxpre.h |
modularsimulator / firstorderpressurecoupling.cpp | gmxpre.h |
gmxana / fitahx.cpp | gmxpre.h |
utility / tests / fixedcapacityvector.cpp | gmxpre.h |
mdlib / force.cpp | gmxpre.h |
mdtypes / tests / forcebuffers.cpp | gmxpre.h |
mdtypes / forcebuffers.cpp | gmxpre.h |
modularsimulator / forceelement.cpp | gmxpre.h |
topology / forcefieldparameters.cpp | gmxpre.h |
mdlib / forcerec.cpp | gmxpre.h |
tables / forcetable.cpp | gmxpre.h |
analysisdata / modules / frameaverager.cpp | gmxpre.h |
mdrunutility / freeenergy.cpp | gmxpre.h |
nbnxm / freeenergydispatch.cpp | gmxpre.h |
mdlib / tests / freeenergyparameters.cpp | gmxpre.h |
mdlib / freeenergyparameters.cpp | gmxpre.h |
modularsimulator / freeenergyperturbationdata.cpp | gmxpre.h |
trajectoryanalysis / tests / freevolume.cpp | gmxpre.h |
trajectoryanalysis / modules / freevolume.cpp | gmxpre.h |
math / tests / functions.cpp | gmxpre.h |
math / functions.cpp | gmxpre.h |
utility / futil.cpp | gmxpre.h |
fileio / g96io.cpp | gmxpre.h |
domdec / ga2la.cpp | gmxpre.h |
random / tests / gammadistribution.cpp | gmxpre.h |
math / tests / gausstransform.cpp | gmxpre.h |
math / gausstransform.cpp | gmxpre.h |
gmxpreprocess / gen_ad.cpp | gmxpre.h |
gmxpreprocess / gen_maxwell_velocities.cpp | gmxpre.h |
gmxpreprocess / gen_vsite.cpp | gmxpre.h |
gmxpreprocess / tests / genconf.cpp | gmxpre.h |
gmxpreprocess / genconf.cpp | gmxpre.h |
gmxpreprocess / genhydro.cpp | gmxpre.h |
gmxpreprocess / tests / genion.cpp | gmxpre.h |
gmxpreprocess / genion.cpp | gmxpre.h |
gmxpreprocess / tests / genrestr.cpp | gmxpre.h |
gmxpreprocess / genrestr.cpp | gmxpre.h |
gmxana / gmx_anaeig.cpp | gmxpre.h |
gmxana / gmx_analyze.cpp | gmxpre.h |
gmxana / gmx_angle.cpp | gmxpre.h |
linearalgebra / gmx_arpack.cpp | gmxpre.h |
gmxana / gmx_awh.cpp | gmxpre.h |
gmxana / gmx_bar.cpp | gmxpre.h |
gmxana / gmx_bundle.cpp | gmxpre.h |
gmxana / tests / gmx_chi.cpp | gmxpre.h |
gmxana / gmx_chi.cpp | gmxpre.h |
gmxana / gmx_cluster.cpp | gmxpre.h |
gmxana / gmx_clustsize.cpp | gmxpre.h |
gmxana / gmx_confrms.cpp | gmxpre.h |
gmxana / gmx_covar.cpp | gmxpre.h |
gmxana / gmx_current.cpp | gmxpre.h |
gmxana / gmx_density.cpp | gmxpre.h |
gmxana / gmx_densmap.cpp | gmxpre.h |
gmxana / gmx_densorder.cpp | gmxpre.h |
gmxana / gmx_dielectric.cpp | gmxpre.h |
gmxana / gmx_dipoles.cpp | gmxpre.h |
gmxana / gmx_disre.cpp | gmxpre.h |
gmxana / gmx_do_dssp.cpp | gmxpre.h |
gmxana / gmx_dos.cpp | gmxpre.h |
gmxana / gmx_dyecoupl.cpp | gmxpre.h |
gmxana / gmx_enemat.cpp | gmxpre.h |
gmxana / gmx_energy.cpp | gmxpre.h |
gmxana / gmx_filter.cpp | gmxpre.h |
gmxana / gmx_gyrate.cpp | gmxpre.h |
gmxana / gmx_h2order.cpp | gmxpre.h |
gmxana / gmx_hbond.cpp | gmxpre.h |
gmxana / gmx_helix.cpp | gmxpre.h |
gmxana / gmx_helixorient.cpp | gmxpre.h |
gmxana / gmx_hydorder.cpp | gmxpre.h |
fileio / gmx_internal_xdr.cpp | gmxpre.h |
gmxana / gmx_lie.cpp | gmxpre.h |
correlationfunctions / gmx_lmcurve.cpp | gmxpre.h |
gmxana / gmx_make_edi.cpp | gmxpre.h |
gmxana / tests / gmx_make_ndx.cpp | gmxpre.h |
gmxana / gmx_mdmat.cpp | gmxpre.h |
gmxana / tests / gmx_mindist.cpp | gmxpre.h |
gmxana / gmx_mindist.cpp | gmxpre.h |
gmxana / gmx_nmeig.cpp | gmxpre.h |
gmxana / gmx_nmens.cpp | gmxpre.h |
gmxana / gmx_nmr.cpp | gmxpre.h |
gmxana / gmx_nmtraj.cpp | gmxpre.h |
mdlib / gmx_omp_nthreads.cpp | gmxpre.h |
gmxana / gmx_order.cpp | gmxpre.h |
gmxana / gmx_polystat.cpp | gmxpre.h |
gmxana / gmx_potential.cpp | gmxpre.h |
gmxana / gmx_principal.cpp | gmxpre.h |
gmxana / gmx_rama.cpp | gmxpre.h |
gmxana / gmx_rms.cpp | gmxpre.h |
gmxana / gmx_rmsdist.cpp | gmxpre.h |
gmxana / gmx_rmsf.cpp | gmxpre.h |
gmxana / gmx_rotacf.cpp | gmxpre.h |
gmxana / gmx_rotmat.cpp | gmxpre.h |
gmxana / gmx_saltbr.cpp | gmxpre.h |
gmxana / gmx_sans.cpp | gmxpre.h |
gmxana / gmx_saxs.cpp | gmxpre.h |
gmxana / gmx_sham.cpp | gmxpre.h |
gmxana / gmx_sigeps.cpp | gmxpre.h |
gmxana / gmx_sorient.cpp | gmxpre.h |
gmxana / gmx_spatial.cpp | gmxpre.h |
gmxana / gmx_spol.cpp | gmxpre.h |
gmxana / gmx_tcaf.cpp | gmxpre.h |
gmxana / tests / gmx_traj.cpp | gmxpre.h |
gmxana / gmx_traj.cpp | gmxpre.h |
gmxana / gmx_trjorder.cpp | gmxpre.h |
gmxana / gmx_vanhove.cpp | gmxpre.h |
gmxana / gmx_velacc.cpp | gmxpre.h |
gmxana / gmx_wham.cpp | gmxpre.h |
gmxana / gmx_wheel.cpp | gmxpre.h |
gmxana / gmx_xpm2ps.cpp | gmxpre.h |
utility / gmxassert.cpp | gmxpre.h |
gmxpreprocess / gmxcpp.cpp | gmxpre.h |
fileio / gmxfio.cpp | gmxpre.h |
fileio / gmxfio_xdr.cpp | gmxpre.h |
utility / gmxomp.cpp | gmxpre.h |
gmxpreprocess / tests / gpp_atomtype.cpp | gmxpre.h |
gmxpreprocess / gpp_atomtype.cpp | gmxpre.h |
gmxpreprocess / tests / gpp_bond_atomtype.cpp | gmxpre.h |
gmxpreprocess / gpp_bond_atomtype.cpp | gmxpre.h |
gmxpreprocess / gpp_nextnb.cpp | gmxpre.h |
fft / gpu_3dfft.cpp | gmxpre.h |
fft / gpu_3dfft_heffte.cpp | gmxpre.h |
fft / gpu_3dfft_ocl.cpp | gmxpre.h |
fft / gpu_3dfft_sycl.cpp | gmxpre.h |
fft / gpu_3dfft_sycl_mkl.cpp | gmxpre.h |
fft / gpu_3dfft_sycl_rocfft.cpp | gmxpre.h |
gpu_utils / gpu_utils.cpp | gmxpre.h |
gpu_utils / tests / gpueventsynchronizer.cpp | gmxpre.h |
mdlib / gpuforcereduction_impl.cpp | gmxpre.h |
mdlib / gpuforcereduction_impl_internal_sycl.cpp | gmxpre.h |
mdlib / gpuforcereduction_impl_stubs.cpp | gmxpre.h |
domdec / gpuhaloexchange_impl.cpp | gmxpre.h |
nbnxm / grid.cpp | gmxpre.h |
nbnxm / gridset.cpp | gmxpre.h |
fileio / groio.cpp | gmxpre.h |
gmxpreprocess / grompp.cpp | gmxpre.h |
gmxpreprocess / tests / grompp_directives.cpp | gmxpre.h |
mdtypes / group.cpp | gmxpre.h |
mdlib / groupcoord.cpp | gmxpre.h |
gmxpreprocess / h_db.cpp | gmxpre.h |
gmxpreprocess / hackblock.cpp | gmxpre.h |
domdec / tests / haloexchange_mpi.cpp | gmxpre.h |
mdrunutility / handlerestart.cpp | gmxpre.h |
hardware / tests / hardwaretopology.cpp | gmxpre.h |
hardware / hardwaretopology.cpp | gmxpre.h |
domdec / tests / hashedmap.cpp | gmxpre.h |
onlinehelp / tests / helpformat.cpp | gmxpre.h |
onlinehelp / helpformat.cpp | gmxpre.h |
onlinehelp / tests / helpmanager.cpp | gmxpre.h |
onlinehelp / helpmanager.cpp | gmxpre.h |
onlinehelp / helptopic.cpp | gmxpre.h |
onlinehelp / tests / helpwritercontext.cpp | gmxpre.h |
onlinehelp / helpwritercontext.cpp | gmxpre.h |
tools / tests / helpwriting.cpp | gmxpre.h |
analysisdata / tests / histogram.cpp | gmxpre.h |
analysisdata / modules / histogram.cpp | gmxpre.h |
applied_forces / awh / histogramsize.cpp | gmxpre.h |
gmxpreprocess / hizzie.cpp | gmxpre.h |
gpu_utils / tests / hostallocator.cpp | gmxpre.h |
gpu_utils / hostallocator.cpp | gmxpre.h |
gmxana / hxprops.cpp | gmxpre.h |
topology / idef.cpp | gmxpre.h |
topology / tests / idef.cpp | gmxpre.h |
hardware / identifyavx512fmaunits.cpp | gmxpre.h |
mdtypes / iforceprovider.cpp | gmxpre.h |
topology / ifunc.cpp | gmxpre.h |
utility / ikeyvaluetreeerror.cpp | gmxpre.h |
imd / imd.cpp | gmxpre.h |
imd / imdsocket.cpp | gmxpre.h |
topology / index.cpp | gmxpre.h |
selection / tests / indexutil.cpp | gmxpre.h |
selection / indexutil.cpp | gmxpre.h |
utility / init.cpp | gmxpre.h |
utility / inmemoryserializer.cpp | gmxpre.h |
utility / tests / inmemoryserializer.cpp | gmxpre.h |
mdtypes / inputrec.cpp | gmxpre.h |
gmxpreprocess / tests / insert_molecules.cpp | gmxpre.h |
gmxpreprocess / insert_molecules.cpp | gmxpre.h |
utility / int64_to_int.cpp | gmxpre.h |
correlationfunctions / integrate.cpp | gmxpre.h |
mdtypes / interaction_const.cpp | gmxpre.h |
topology / invblock.cpp | gmxpre.h |
math / tests / invertmatrix.cpp | gmxpre.h |
math / invertmatrix.cpp | gmxpre.h |
nbnxm / kernel_common.cpp | gmxpre.h |
nbnxm / kernels_simd_4xm / kernel_ElecEw_VdwLJ_F.cpp | gmxpre.h |
nbnxm / kernels_simd_2xmm / kernel_ElecEw_VdwLJ_F.cpp | gmxpre.h |
nbnxm / kernels_simd_4xm / kernel_ElecEw_VdwLJ_VF.cpp | gmxpre.h |
nbnxm / kernels_simd_2xmm / kernel_ElecEw_VdwLJ_VF.cpp | gmxpre.h |
nbnxm / kernels_simd_4xm / kernel_ElecEw_VdwLJ_VgrpF.cpp | gmxpre.h |
nbnxm / kernels_simd_2xmm / kernel_ElecEw_VdwLJ_VgrpF.cpp | gmxpre.h |
nbnxm / kernels_simd_4xm / kernel_ElecEw_VdwLJCombGeom_F.cpp | gmxpre.h |
nbnxm / kernels_simd_2xmm / kernel_ElecEw_VdwLJCombGeom_F.cpp | gmxpre.h |
nbnxm / kernels_simd_4xm / kernel_ElecEw_VdwLJCombGeom_VF.cpp | gmxpre.h |
nbnxm / kernels_simd_2xmm / kernel_ElecEw_VdwLJCombGeom_VF.cpp | gmxpre.h |
nbnxm / kernels_simd_4xm / kernel_ElecEw_VdwLJCombGeom_VgrpF.cpp | gmxpre.h |
nbnxm / kernels_simd_2xmm / kernel_ElecEw_VdwLJCombGeom_VgrpF.cpp | gmxpre.h |
nbnxm / kernels_simd_4xm / kernel_ElecEw_VdwLJCombLB_F.cpp | gmxpre.h |
nbnxm / kernels_simd_2xmm / kernel_ElecEw_VdwLJCombLB_F.cpp | gmxpre.h |
nbnxm / kernels_simd_4xm / kernel_ElecEw_VdwLJCombLB_VF.cpp | gmxpre.h |
nbnxm / kernels_simd_2xmm / kernel_ElecEw_VdwLJCombLB_VF.cpp | gmxpre.h |
nbnxm / kernels_simd_4xm / kernel_ElecEw_VdwLJCombLB_VgrpF.cpp | gmxpre.h |
nbnxm / kernels_simd_2xmm / kernel_ElecEw_VdwLJCombLB_VgrpF.cpp | gmxpre.h |
nbnxm / kernels_simd_4xm / kernel_ElecEw_VdwLJEwCombGeom_F.cpp | gmxpre.h |
nbnxm / kernels_simd_2xmm / kernel_ElecEw_VdwLJEwCombGeom_F.cpp | gmxpre.h |
nbnxm / kernels_simd_4xm / kernel_ElecEw_VdwLJEwCombGeom_VF.cpp | gmxpre.h |
nbnxm / kernels_simd_2xmm / kernel_ElecEw_VdwLJEwCombGeom_VF.cpp | gmxpre.h |
nbnxm / kernels_simd_4xm / kernel_ElecEw_VdwLJEwCombGeom_VgrpF.cpp | gmxpre.h |
nbnxm / kernels_simd_2xmm / kernel_ElecEw_VdwLJEwCombGeom_VgrpF.cpp | gmxpre.h |
nbnxm / kernels_simd_4xm / kernel_ElecEw_VdwLJFSw_F.cpp | gmxpre.h |
nbnxm / kernels_simd_2xmm / kernel_ElecEw_VdwLJFSw_F.cpp | gmxpre.h |
nbnxm / kernels_simd_4xm / kernel_ElecEw_VdwLJFSw_VF.cpp | gmxpre.h |
nbnxm / kernels_simd_2xmm / kernel_ElecEw_VdwLJFSw_VF.cpp | gmxpre.h |
nbnxm / kernels_simd_4xm / kernel_ElecEw_VdwLJFSw_VgrpF.cpp | gmxpre.h |
nbnxm / kernels_simd_2xmm / kernel_ElecEw_VdwLJFSw_VgrpF.cpp | gmxpre.h |
nbnxm / kernels_simd_4xm / kernel_ElecEw_VdwLJPSw_F.cpp | gmxpre.h |
nbnxm / kernels_simd_2xmm / kernel_ElecEw_VdwLJPSw_F.cpp | gmxpre.h |
nbnxm / kernels_simd_4xm / kernel_ElecEw_VdwLJPSw_VF.cpp | gmxpre.h |
nbnxm / kernels_simd_2xmm / kernel_ElecEw_VdwLJPSw_VF.cpp | gmxpre.h |
nbnxm / kernels_simd_4xm / kernel_ElecEw_VdwLJPSw_VgrpF.cpp | gmxpre.h |
nbnxm / kernels_simd_2xmm / kernel_ElecEw_VdwLJPSw_VgrpF.cpp | gmxpre.h |
nbnxm / kernels_simd_4xm / kernel_ElecEwTwinCut_VdwLJ_F.cpp | gmxpre.h |
nbnxm / kernels_simd_2xmm / kernel_ElecEwTwinCut_VdwLJ_F.cpp | gmxpre.h |
nbnxm / kernels_simd_4xm / kernel_ElecEwTwinCut_VdwLJ_VF.cpp | gmxpre.h |
nbnxm / kernels_simd_2xmm / kernel_ElecEwTwinCut_VdwLJ_VF.cpp | gmxpre.h |
nbnxm / kernels_simd_4xm / kernel_ElecEwTwinCut_VdwLJ_VgrpF.cpp | gmxpre.h |
nbnxm / kernels_simd_2xmm / kernel_ElecEwTwinCut_VdwLJ_VgrpF.cpp | gmxpre.h |
nbnxm / kernels_simd_4xm / kernel_ElecEwTwinCut_VdwLJCombGeom_F.cpp | gmxpre.h |
nbnxm / kernels_simd_2xmm / kernel_ElecEwTwinCut_VdwLJCombGeom_F.cpp | gmxpre.h |
nbnxm / kernels_simd_4xm / kernel_ElecEwTwinCut_VdwLJCombGeom_VF.cpp | gmxpre.h |
nbnxm / kernels_simd_2xmm / kernel_ElecEwTwinCut_VdwLJCombGeom_VF.cpp | gmxpre.h |
nbnxm / kernels_simd_4xm / kernel_ElecEwTwinCut_VdwLJCombGeom_VgrpF.cpp | gmxpre.h |
nbnxm / kernels_simd_2xmm / kernel_ElecEwTwinCut_VdwLJCombGeom_VgrpF.cpp | gmxpre.h |
nbnxm / kernels_simd_4xm / kernel_ElecEwTwinCut_VdwLJCombLB_F.cpp | gmxpre.h |
nbnxm / kernels_simd_2xmm / kernel_ElecEwTwinCut_VdwLJCombLB_F.cpp | gmxpre.h |
nbnxm / kernels_simd_4xm / kernel_ElecEwTwinCut_VdwLJCombLB_VF.cpp | gmxpre.h |
nbnxm / kernels_simd_2xmm / kernel_ElecEwTwinCut_VdwLJCombLB_VF.cpp | gmxpre.h |
nbnxm / kernels_simd_4xm / kernel_ElecEwTwinCut_VdwLJCombLB_VgrpF.cpp | gmxpre.h |
nbnxm / kernels_simd_2xmm / kernel_ElecEwTwinCut_VdwLJCombLB_VgrpF.cpp | gmxpre.h |
nbnxm / kernels_simd_4xm / kernel_ElecEwTwinCut_VdwLJEwCombGeom_F.cpp | gmxpre.h |
nbnxm / kernels_simd_2xmm / kernel_ElecEwTwinCut_VdwLJEwCombGeom_F.cpp | gmxpre.h |
nbnxm / kernels_simd_4xm / kernel_ElecEwTwinCut_VdwLJEwCombGeom_VF.cpp | gmxpre.h |
nbnxm / kernels_simd_2xmm / kernel_ElecEwTwinCut_VdwLJEwCombGeom_VF.cpp | gmxpre.h |
nbnxm / kernels_simd_4xm / kernel_ElecEwTwinCut_VdwLJEwCombGeom_VgrpF.cpp | gmxpre.h |
nbnxm / kernels_simd_2xmm / kernel_ElecEwTwinCut_VdwLJEwCombGeom_VgrpF.cpp | gmxpre.h |
nbnxm / kernels_simd_4xm / kernel_ElecEwTwinCut_VdwLJFSw_F.cpp | gmxpre.h |
nbnxm / kernels_simd_2xmm / kernel_ElecEwTwinCut_VdwLJFSw_F.cpp | gmxpre.h |
nbnxm / kernels_simd_4xm / kernel_ElecEwTwinCut_VdwLJFSw_VF.cpp | gmxpre.h |
nbnxm / kernels_simd_2xmm / kernel_ElecEwTwinCut_VdwLJFSw_VF.cpp | gmxpre.h |
nbnxm / kernels_simd_4xm / kernel_ElecEwTwinCut_VdwLJFSw_VgrpF.cpp | gmxpre.h |
nbnxm / kernels_simd_2xmm / kernel_ElecEwTwinCut_VdwLJFSw_VgrpF.cpp | gmxpre.h |
nbnxm / kernels_simd_4xm / kernel_ElecEwTwinCut_VdwLJPSw_F.cpp | gmxpre.h |
nbnxm / kernels_simd_2xmm / kernel_ElecEwTwinCut_VdwLJPSw_F.cpp | gmxpre.h |
nbnxm / kernels_simd_4xm / kernel_ElecEwTwinCut_VdwLJPSw_VF.cpp | gmxpre.h |
nbnxm / kernels_simd_2xmm / kernel_ElecEwTwinCut_VdwLJPSw_VF.cpp | gmxpre.h |
nbnxm / kernels_simd_4xm / kernel_ElecEwTwinCut_VdwLJPSw_VgrpF.cpp | gmxpre.h |
nbnxm / kernels_simd_2xmm / kernel_ElecEwTwinCut_VdwLJPSw_VgrpF.cpp | gmxpre.h |
nbnxm / kernels_simd_4xm / kernel_ElecQSTab_VdwLJ_F.cpp | gmxpre.h |
nbnxm / kernels_simd_2xmm / kernel_ElecQSTab_VdwLJ_F.cpp | gmxpre.h |
nbnxm / kernels_simd_4xm / kernel_ElecQSTab_VdwLJ_VF.cpp | gmxpre.h |
nbnxm / kernels_simd_2xmm / kernel_ElecQSTab_VdwLJ_VF.cpp | gmxpre.h |
nbnxm / kernels_simd_4xm / kernel_ElecQSTab_VdwLJ_VgrpF.cpp | gmxpre.h |
nbnxm / kernels_simd_2xmm / kernel_ElecQSTab_VdwLJ_VgrpF.cpp | gmxpre.h |
nbnxm / kernels_simd_4xm / kernel_ElecQSTab_VdwLJCombGeom_F.cpp | gmxpre.h |
nbnxm / kernels_simd_2xmm / kernel_ElecQSTab_VdwLJCombGeom_F.cpp | gmxpre.h |
nbnxm / kernels_simd_4xm / kernel_ElecQSTab_VdwLJCombGeom_VF.cpp | gmxpre.h |
nbnxm / kernels_simd_2xmm / kernel_ElecQSTab_VdwLJCombGeom_VF.cpp | gmxpre.h |
nbnxm / kernels_simd_4xm / kernel_ElecQSTab_VdwLJCombGeom_VgrpF.cpp | gmxpre.h |
nbnxm / kernels_simd_2xmm / kernel_ElecQSTab_VdwLJCombGeom_VgrpF.cpp | gmxpre.h |
nbnxm / kernels_simd_4xm / kernel_ElecQSTab_VdwLJCombLB_F.cpp | gmxpre.h |
nbnxm / kernels_simd_2xmm / kernel_ElecQSTab_VdwLJCombLB_F.cpp | gmxpre.h |
nbnxm / kernels_simd_4xm / kernel_ElecQSTab_VdwLJCombLB_VF.cpp | gmxpre.h |
nbnxm / kernels_simd_2xmm / kernel_ElecQSTab_VdwLJCombLB_VF.cpp | gmxpre.h |
nbnxm / kernels_simd_4xm / kernel_ElecQSTab_VdwLJCombLB_VgrpF.cpp | gmxpre.h |
nbnxm / kernels_simd_2xmm / kernel_ElecQSTab_VdwLJCombLB_VgrpF.cpp | gmxpre.h |
nbnxm / kernels_simd_4xm / kernel_ElecQSTab_VdwLJEwCombGeom_F.cpp | gmxpre.h |
nbnxm / kernels_simd_2xmm / kernel_ElecQSTab_VdwLJEwCombGeom_F.cpp | gmxpre.h |
nbnxm / kernels_simd_4xm / kernel_ElecQSTab_VdwLJEwCombGeom_VF.cpp | gmxpre.h |
nbnxm / kernels_simd_2xmm / kernel_ElecQSTab_VdwLJEwCombGeom_VF.cpp | gmxpre.h |
nbnxm / kernels_simd_4xm / kernel_ElecQSTab_VdwLJEwCombGeom_VgrpF.cpp | gmxpre.h |
nbnxm / kernels_simd_2xmm / kernel_ElecQSTab_VdwLJEwCombGeom_VgrpF.cpp | gmxpre.h |
nbnxm / kernels_simd_4xm / kernel_ElecQSTab_VdwLJFSw_F.cpp | gmxpre.h |
nbnxm / kernels_simd_2xmm / kernel_ElecQSTab_VdwLJFSw_F.cpp | gmxpre.h |
nbnxm / kernels_simd_4xm / kernel_ElecQSTab_VdwLJFSw_VF.cpp | gmxpre.h |
nbnxm / kernels_simd_2xmm / kernel_ElecQSTab_VdwLJFSw_VF.cpp | gmxpre.h |
nbnxm / kernels_simd_4xm / kernel_ElecQSTab_VdwLJFSw_VgrpF.cpp | gmxpre.h |
nbnxm / kernels_simd_2xmm / kernel_ElecQSTab_VdwLJFSw_VgrpF.cpp | gmxpre.h |
nbnxm / kernels_simd_4xm / kernel_ElecQSTab_VdwLJPSw_F.cpp | gmxpre.h |
nbnxm / kernels_simd_2xmm / kernel_ElecQSTab_VdwLJPSw_F.cpp | gmxpre.h |
nbnxm / kernels_simd_4xm / kernel_ElecQSTab_VdwLJPSw_VF.cpp | gmxpre.h |
nbnxm / kernels_simd_2xmm / kernel_ElecQSTab_VdwLJPSw_VF.cpp | gmxpre.h |
nbnxm / kernels_simd_4xm / kernel_ElecQSTab_VdwLJPSw_VgrpF.cpp | gmxpre.h |
nbnxm / kernels_simd_2xmm / kernel_ElecQSTab_VdwLJPSw_VgrpF.cpp | gmxpre.h |
nbnxm / kernels_simd_4xm / kernel_ElecQSTabTwinCut_VdwLJ_F.cpp | gmxpre.h |
nbnxm / kernels_simd_2xmm / kernel_ElecQSTabTwinCut_VdwLJ_F.cpp | gmxpre.h |
nbnxm / kernels_simd_4xm / kernel_ElecQSTabTwinCut_VdwLJ_VF.cpp | gmxpre.h |
nbnxm / kernels_simd_2xmm / kernel_ElecQSTabTwinCut_VdwLJ_VF.cpp | gmxpre.h |
nbnxm / kernels_simd_4xm / kernel_ElecQSTabTwinCut_VdwLJ_VgrpF.cpp | gmxpre.h |
nbnxm / kernels_simd_2xmm / kernel_ElecQSTabTwinCut_VdwLJ_VgrpF.cpp | gmxpre.h |
nbnxm / kernels_simd_4xm / kernel_ElecQSTabTwinCut_VdwLJCombGeom_F.cpp | gmxpre.h |
nbnxm / kernels_simd_2xmm / kernel_ElecQSTabTwinCut_VdwLJCombGeom_F.cpp | gmxpre.h |
nbnxm / kernels_simd_4xm / kernel_ElecQSTabTwinCut_VdwLJCombGeom_VF.cpp | gmxpre.h |
nbnxm / kernels_simd_2xmm / kernel_ElecQSTabTwinCut_VdwLJCombGeom_VF.cpp | gmxpre.h |
nbnxm / kernels_simd_4xm / kernel_ElecQSTabTwinCut_VdwLJCombGeom_VgrpF.cpp | gmxpre.h |
nbnxm / kernels_simd_2xmm / kernel_ElecQSTabTwinCut_VdwLJCombGeom_VgrpF.cpp | gmxpre.h |
nbnxm / kernels_simd_4xm / kernel_ElecQSTabTwinCut_VdwLJCombLB_F.cpp | gmxpre.h |
nbnxm / kernels_simd_2xmm / kernel_ElecQSTabTwinCut_VdwLJCombLB_F.cpp | gmxpre.h |
nbnxm / kernels_simd_4xm / kernel_ElecQSTabTwinCut_VdwLJCombLB_VF.cpp | gmxpre.h |
nbnxm / kernels_simd_2xmm / kernel_ElecQSTabTwinCut_VdwLJCombLB_VF.cpp | gmxpre.h |
nbnxm / kernels_simd_4xm / kernel_ElecQSTabTwinCut_VdwLJCombLB_VgrpF.cpp | gmxpre.h |
nbnxm / kernels_simd_2xmm / kernel_ElecQSTabTwinCut_VdwLJCombLB_VgrpF.cpp | gmxpre.h |
nbnxm / kernels_simd_4xm / kernel_ElecQSTabTwinCut_VdwLJEwCombGeom_F.cpp | gmxpre.h |
nbnxm / kernels_simd_2xmm / kernel_ElecQSTabTwinCut_VdwLJEwCombGeom_F.cpp | gmxpre.h |
nbnxm / kernels_simd_4xm / kernel_ElecQSTabTwinCut_VdwLJEwCombGeom_VF.cpp | gmxpre.h |
nbnxm / kernels_simd_2xmm / kernel_ElecQSTabTwinCut_VdwLJEwCombGeom_VF.cpp | gmxpre.h |
nbnxm / kernels_simd_4xm / kernel_ElecQSTabTwinCut_VdwLJEwCombGeom_VgrpF.cpp | gmxpre.h |
nbnxm / kernels_simd_2xmm / kernel_ElecQSTabTwinCut_VdwLJEwCombGeom_VgrpF.cpp | gmxpre.h |
nbnxm / kernels_simd_4xm / kernel_ElecQSTabTwinCut_VdwLJFSw_F.cpp | gmxpre.h |
nbnxm / kernels_simd_2xmm / kernel_ElecQSTabTwinCut_VdwLJFSw_F.cpp | gmxpre.h |
nbnxm / kernels_simd_4xm / kernel_ElecQSTabTwinCut_VdwLJFSw_VF.cpp | gmxpre.h |
nbnxm / kernels_simd_2xmm / kernel_ElecQSTabTwinCut_VdwLJFSw_VF.cpp | gmxpre.h |
nbnxm / kernels_simd_4xm / kernel_ElecQSTabTwinCut_VdwLJFSw_VgrpF.cpp | gmxpre.h |
nbnxm / kernels_simd_2xmm / kernel_ElecQSTabTwinCut_VdwLJFSw_VgrpF.cpp | gmxpre.h |
nbnxm / kernels_simd_4xm / kernel_ElecQSTabTwinCut_VdwLJPSw_F.cpp | gmxpre.h |
nbnxm / kernels_simd_2xmm / kernel_ElecQSTabTwinCut_VdwLJPSw_F.cpp | gmxpre.h |
nbnxm / kernels_simd_4xm / kernel_ElecQSTabTwinCut_VdwLJPSw_VF.cpp | gmxpre.h |
nbnxm / kernels_simd_2xmm / kernel_ElecQSTabTwinCut_VdwLJPSw_VF.cpp | gmxpre.h |
nbnxm / kernels_simd_4xm / kernel_ElecQSTabTwinCut_VdwLJPSw_VgrpF.cpp | gmxpre.h |
nbnxm / kernels_simd_2xmm / kernel_ElecQSTabTwinCut_VdwLJPSw_VgrpF.cpp | gmxpre.h |
nbnxm / kernels_simd_4xm / kernel_ElecRF_VdwLJ_F.cpp | gmxpre.h |
nbnxm / kernels_simd_2xmm / kernel_ElecRF_VdwLJ_F.cpp | gmxpre.h |
nbnxm / kernels_simd_4xm / kernel_ElecRF_VdwLJ_VF.cpp | gmxpre.h |
nbnxm / kernels_simd_2xmm / kernel_ElecRF_VdwLJ_VF.cpp | gmxpre.h |
nbnxm / kernels_simd_4xm / kernel_ElecRF_VdwLJ_VgrpF.cpp | gmxpre.h |
nbnxm / kernels_simd_2xmm / kernel_ElecRF_VdwLJ_VgrpF.cpp | gmxpre.h |
nbnxm / kernels_simd_4xm / kernel_ElecRF_VdwLJCombGeom_F.cpp | gmxpre.h |
nbnxm / kernels_simd_2xmm / kernel_ElecRF_VdwLJCombGeom_F.cpp | gmxpre.h |
nbnxm / kernels_simd_4xm / kernel_ElecRF_VdwLJCombGeom_VF.cpp | gmxpre.h |
nbnxm / kernels_simd_2xmm / kernel_ElecRF_VdwLJCombGeom_VF.cpp | gmxpre.h |
nbnxm / kernels_simd_4xm / kernel_ElecRF_VdwLJCombGeom_VgrpF.cpp | gmxpre.h |
nbnxm / kernels_simd_2xmm / kernel_ElecRF_VdwLJCombGeom_VgrpF.cpp | gmxpre.h |
nbnxm / kernels_simd_4xm / kernel_ElecRF_VdwLJCombLB_F.cpp | gmxpre.h |
nbnxm / kernels_simd_2xmm / kernel_ElecRF_VdwLJCombLB_F.cpp | gmxpre.h |
nbnxm / kernels_simd_4xm / kernel_ElecRF_VdwLJCombLB_VF.cpp | gmxpre.h |
nbnxm / kernels_simd_2xmm / kernel_ElecRF_VdwLJCombLB_VF.cpp | gmxpre.h |
nbnxm / kernels_simd_4xm / kernel_ElecRF_VdwLJCombLB_VgrpF.cpp | gmxpre.h |
nbnxm / kernels_simd_2xmm / kernel_ElecRF_VdwLJCombLB_VgrpF.cpp | gmxpre.h |
nbnxm / kernels_simd_4xm / kernel_ElecRF_VdwLJEwCombGeom_F.cpp | gmxpre.h |
nbnxm / kernels_simd_2xmm / kernel_ElecRF_VdwLJEwCombGeom_F.cpp | gmxpre.h |
nbnxm / kernels_simd_4xm / kernel_ElecRF_VdwLJEwCombGeom_VF.cpp | gmxpre.h |
nbnxm / kernels_simd_2xmm / kernel_ElecRF_VdwLJEwCombGeom_VF.cpp | gmxpre.h |
nbnxm / kernels_simd_4xm / kernel_ElecRF_VdwLJEwCombGeom_VgrpF.cpp | gmxpre.h |
nbnxm / kernels_simd_2xmm / kernel_ElecRF_VdwLJEwCombGeom_VgrpF.cpp | gmxpre.h |
nbnxm / kernels_simd_4xm / kernel_ElecRF_VdwLJFSw_F.cpp | gmxpre.h |
nbnxm / kernels_simd_2xmm / kernel_ElecRF_VdwLJFSw_F.cpp | gmxpre.h |
nbnxm / kernels_simd_4xm / kernel_ElecRF_VdwLJFSw_VF.cpp | gmxpre.h |
nbnxm / kernels_simd_2xmm / kernel_ElecRF_VdwLJFSw_VF.cpp | gmxpre.h |
nbnxm / kernels_simd_4xm / kernel_ElecRF_VdwLJFSw_VgrpF.cpp | gmxpre.h |
nbnxm / kernels_simd_2xmm / kernel_ElecRF_VdwLJFSw_VgrpF.cpp | gmxpre.h |
nbnxm / kernels_simd_4xm / kernel_ElecRF_VdwLJPSw_F.cpp | gmxpre.h |
nbnxm / kernels_simd_2xmm / kernel_ElecRF_VdwLJPSw_F.cpp | gmxpre.h |
nbnxm / kernels_simd_4xm / kernel_ElecRF_VdwLJPSw_VF.cpp | gmxpre.h |
nbnxm / kernels_simd_2xmm / kernel_ElecRF_VdwLJPSw_VF.cpp | gmxpre.h |
nbnxm / kernels_simd_4xm / kernel_ElecRF_VdwLJPSw_VgrpF.cpp | gmxpre.h |
nbnxm / kernels_simd_2xmm / kernel_ElecRF_VdwLJPSw_VgrpF.cpp | gmxpre.h |
nbnxm / kernels_reference / kernel_gpu_ref.cpp | gmxpre.h |
nbnxm / kernels_simd_4xm / kernel_prune.cpp | gmxpre.h |
nbnxm / kernels_simd_2xmm / kernel_prune.cpp | gmxpre.h |
nbnxm / kernels_reference / kernel_ref.cpp | gmxpre.h |
nbnxm / kernels_reference / kernel_ref_prune.cpp | gmxpre.h |
nbnxm / kerneldispatch.cpp | gmxpre.h |
nbnxm / tests / kernelsetup.cpp | gmxpre.h |
utility / keyvaluetree.cpp | gmxpre.h |
utility / keyvaluetreemdpwriter.cpp | gmxpre.h |
utility / keyvaluetreeserializer.cpp | gmxpre.h |
utility / tests / keyvaluetreeserializer.cpp | gmxpre.h |
utility / keyvaluetreetransform.cpp | gmxpre.h |
utility / tests / keyvaluetreetransform.cpp | gmxpre.h |
mdspan / tests / layouts.cpp | gmxpre.h |
mdlib / tests / leapfrog.cpp | gmxpre.h |
mdlib / leapfrog_gpu.cpp | gmxpre.h |
mdlib / leapfrog_gpu_internal_sycl.cpp | gmxpre.h |
mdlib / tests / leapfrogtestdata.cpp | gmxpre.h |
mdlib / tests / leapfrogtestrunners.cpp | gmxpre.h |
mdlib / tests / leapfrogtestrunners_gpu.cpp | gmxpre.h |
energyanalysis / tests / legacyenergy.cpp | gmxpre.h |
mdrun / legacymdrunoptions.cpp | gmxpre.h |
mdrun / legacysimulator.cpp | gmxpre.h |
fileio / libxdrf.cpp | gmxpre.h |
analysisdata / tests / lifetime.cpp | gmxpre.h |
analysisdata / modules / lifetime.cpp | gmxpre.h |
mdlib / lincs.cpp | gmxpre.h |
mdlib / lincs_gpu.cpp | gmxpre.h |
listed_forces / listed_forces.cpp | gmxpre.h |
listed_forces / listed_forces_gpu_impl.cpp | gmxpre.h |
listed_forces / listed_internal.cpp | gmxpre.h |
utility / tests / listoflists.cpp | gmxpre.h |
domdec / localatomset.cpp | gmxpre.h |
domdec / localatomsetdata.cpp | gmxpre.h |
domdec / tests / localatomsetmanager.cpp | gmxpre.h |
domdec / localatomsetmanager.cpp | gmxpre.h |
domdec / localtopology.cpp | gmxpre.h |
domdec / localtopologychecker.cpp | gmxpre.h |
utility / logger.cpp | gmxpre.h |
utility / tests / logger.cpp | gmxpre.h |
utility / loggerbuilder.cpp | gmxpre.h |
mdrunutility / logging.cpp | gmxpre.h |
ewald / long_range_correction.cpp | gmxpre.h |
tools / make_ndx.cpp | gmxpre.h |
domdec / makebondedlinks.cpp | gmxpre.h |
gmxpreprocess / makeexclusiondistances.cpp | gmxpre.h |
listed_forces / manage_threading.cpp | gmxpre.h |
restraint / tests / manager.cpp | gmxpre.h |
restraint / manager.cpp | gmxpre.h |
correlationfunctions / tests / manyautocorrelation.cpp | gmxpre.h |
correlationfunctions / manyautocorrelation.cpp | gmxpre.h |
fileio / matio.cpp | gmxpre.h |
math / tests / matrix.cpp | gmxpre.h |
math / matrix.cpp | gmxpre.h |
linearalgebra / matrix.cpp | gmxpre.h |
mdrun / md.cpp | gmxpre.h |
fileio / md5.cpp | gmxpre.h |
mdtypes / md_enums.cpp | gmxpre.h |
mdlib / md_support.cpp | gmxpre.h |
mdlib / mdatoms.cpp | gmxpre.h |
mdlib / mdebin_bar.cpp | gmxpre.h |
mdrun / mdmodules.cpp | gmxpre.h |
utility / tests / mdmodulesnotifier.cpp | gmxpre.h |
mdlib / mdoutf.cpp | gmxpre.h |
domdec / mdsetup.cpp | gmxpre.h |
mdspan / tests / mdspan.cpp | gmxpre.h |
mdlib / membed.cpp | gmxpre.h |
mdrun / membedholder.cpp | gmxpre.h |
selection / mempool.cpp | gmxpre.h |
utility / message_string_collector.cpp | gmxpre.h |
utility / tests / message_string_collector.cpp | gmxpre.h |
mdrun / mimic.cpp | gmxpre.h |
mdrun / minimize.cpp | gmxpre.h |
tools / mk_angndx.cpp | gmxpre.h |
analysisdata / tests / mock_datamodule.cpp | gmxpre.h |
onlinehelp / tests / mock_helptopic.cpp | gmxpre.h |
hardware / tests / mockhardwaretopology.cpp | gmxpre.h |
modularsimulator / modularsimulator.cpp | gmxpre.h |
trajectoryanalysis / modules.cpp | gmxpre.h |
trajectoryanalysis / tests / moduletest.cpp | gmxpre.h |
compat / tests / mp11.cpp | gmxpre.h |
fileio / tests / mrcdensitymap.cpp | gmxpre.h |
fileio / mrcdensitymap.cpp | gmxpre.h |
fileio / tests / mrcdensitymapheader.cpp | gmxpre.h |
fileio / mrcdensitymapheader.cpp | gmxpre.h |
fileio / tests / mrcserializer.cpp | gmxpre.h |
fileio / mrcserializer.cpp | gmxpre.h |
trajectoryanalysis / tests / msd.cpp | gmxpre.h |
trajectoryanalysis / modules / msd.cpp | gmxpre.h |
pbcutil / tests / mshift.cpp | gmxpre.h |
pbcutil / mshift.cpp | gmxpre.h |
topology / tests / mtop.cpp | gmxpre.h |
topology / mtop_util.cpp | gmxpre.h |
modularsimulator / mttk.cpp | gmxpre.h |
fileio / mtxio.cpp | gmxpre.h |
math / tests / multidimarray.cpp | gmxpre.h |
mdtypes / tests / multipletimestepping.cpp | gmxpre.h |
mdtypes / multipletimestepping.cpp | gmxpre.h |
mdrunutility / multisim.cpp | gmxpre.h |
gmxlib / nonbonded / tests / nb_free_energy.cpp | gmxpre.h |
gmxlib / nonbonded / nb_free_energy.cpp | gmxpre.h |
nbnxm / nbnxm.cpp | gmxpre.h |
nbnxm / nbnxm_geometry.cpp | gmxpre.h |
nbnxm / nbnxm_gpu_buffer_ops.cpp | gmxpre.h |
nbnxm / opencl / nbnxm_gpu_buffer_ops_internal_ocl.cpp | gmxpre.h |
nbnxm / sycl / nbnxm_gpu_buffer_ops_internal_sycl.cpp | gmxpre.h |
nbnxm / nbnxm_gpu_data_mgmt.cpp | gmxpre.h |
nbnxm / opencl / nbnxm_ocl.cpp | gmxpre.h |
nbnxm / opencl / nbnxm_ocl_data_mgmt.cpp | gmxpre.h |
nbnxm / opencl / nbnxm_ocl_jit_support.cpp | gmxpre.h |
nbnxm / nbnxm_setup.cpp | gmxpre.h |
nbnxm / sycl / nbnxm_sycl.cpp | gmxpre.h |
nbnxm / sycl / nbnxm_sycl_data_mgmt.cpp | gmxpre.h |
nbnxm / sycl / nbnxm_sycl_kernel.cpp | gmxpre.h |
nbnxm / sycl / nbnxm_sycl_kernel_pruneonly.cpp | gmxpre.h |
selection / tests / nbsearch.cpp | gmxpre.h |
selection / nbsearch.cpp | gmxpre.h |
math / tests / neldermead.cpp | gmxpre.h |
math / neldermead.cpp | gmxpre.h |
gmxlib / network.cpp | gmxpre.h |
utility / niceheader.cpp | gmxpre.h |
gmxpreprocess / nm2type.cpp | gmxpre.h |
random / tests / normaldistribution.cpp | gmxpre.h |
modularsimulator / nosehooverchains.cpp | gmxpre.h |
gmxana / nrama.cpp | gmxpre.h |
linearalgebra / nrjac.cpp | gmxpre.h |
gmxlib / nrnb.cpp | gmxpre.h |
gmxana / nsfactor.cpp | gmxpre.h |
domdec / nsgrid.cpp | gmxpre.h |
mdtypes / observableshistory.cpp | gmxpre.h |
mdtypes / tests / observablesreducer.cpp | gmxpre.h |
mdtypes / observablesreducer.cpp | gmxpre.h |
gpu_utils / ocl_caching.cpp | gmxpre.h |
gpu_utils / ocl_compiler.cpp | gmxpre.h |
gpu_utils / oclutils.cpp | gmxpre.h |
fileio / oenv.cpp | gmxpre.h |
math / tests / optimization.cpp | gmxpre.h |
math / optimization.cpp | gmxpre.h |
options / tests / option.cpp | gmxpre.h |
options / options.cpp | gmxpre.h |
options / tests / optionsassigner.cpp | gmxpre.h |
options / optionsassigner.cpp | gmxpre.h |
options / optionsection.cpp | gmxpre.h |
options / optionsvisitor.cpp | gmxpre.h |
listed_forces / orires.cpp | gmxpre.h |
pulling / output.cpp | gmxpre.h |
coordinateio / tests / outputadaptercontainer.cpp | gmxpre.h |
coordinateio / outputadaptercontainer.cpp | gmxpre.h |
coordinateio / tests / outputadapters.cpp | gmxpre.h |
coordinateio / tests / outputadapters.h | gmxpre.h |
coordinateio / outputadapters / outputselector.cpp | gmxpre.h |
math / tests / paddedvector.cpp | gmxpre.h |
trajectoryanalysis / tests / pairdist.cpp | gmxpre.h |
trajectoryanalysis / modules / pairdist.cpp | gmxpre.h |
nbnxm / pairlist.cpp | gmxpre.h |
nbnxm / pairlist_tuning.cpp | gmxpre.h |
nbnxm / pairlistparams.cpp | gmxpre.h |
nbnxm / pairlistset.cpp | gmxpre.h |
listed_forces / tests / pairs.cpp | gmxpre.h |
listed_forces / pairs.cpp | gmxpre.h |
nbnxm / pairsearch.cpp | gmxpre.h |
fft / parallel_3dfft.cpp | gmxpre.h |
selection / params.cpp | gmxpre.h |
commandline / tests / pargs.cpp | gmxpre.h |
commandline / pargs.cpp | gmxpre.h |
modularsimulator / parrinellorahmanbarostat.cpp | gmxpre.h |
selection / parsetree.cpp | gmxpre.h |
domdec / partition.cpp | gmxpre.h |
utility / path.cpp | gmxpre.h |
utility / tests / path.cpp | gmxpre.h |
pbcutil / tests / pbc.cpp | gmxpre.h |
pbcutil / pbc.cpp | gmxpre.h |
pbcutil / pbc_simd.cpp | gmxpre.h |
pbcutil / tests / pbcenums.cpp | gmxpre.h |
pbcutil / pbcenums.cpp | gmxpre.h |
pbcutil / pbcmethods.cpp | gmxpre.h |
pbcutil / pbcmethods.h | gmxpre.h |
gmxpreprocess / tests / pdb2gmx.cpp | gmxpre.h |
gmxpreprocess / pdb2gmx.cpp | gmxpre.h |
gmxpreprocess / pdb2top.cpp | gmxpre.h |
fileio / pdbio.cpp | gmxpre.h |
mdlib / perf_est.cpp | gmxpre.h |
gmxpreprocess / pgutil.cpp | gmxpre.h |
utility / physicalnodecommunicator.cpp | gmxpre.h |
utility / tests / physicalnodecommunicator.cpp | gmxpre.h |
utility / tests / physicalnodecommunicator_mpi.cpp | gmxpre.h |
gpu_utils / tests / pinnedmemorychecker.cpp | gmxpre.h |
utility / pleasecite.cpp | gmxpre.h |
analysisdata / modules / plot.cpp | gmxpre.h |
gpu_utils / pmalloc_ocl.cpp | gmxpre.h |
gpu_utils / pmalloc_sycl.cpp | gmxpre.h |
ewald / tests / pme.cpp | gmxpre.h |
ewald / pme.cpp | gmxpre.h |
ewald / pme_coordinate_receiver_gpu_impl.cpp | gmxpre.h |
tools / pme_error.cpp | gmxpre.h |
ewald / pme_force_sender_gpu_impl.cpp | gmxpre.h |
ewald / pme_gather.cpp | gmxpre.h |
ewald / pme_gather_sycl.cpp | gmxpre.h |
ewald / pme_gpu.cpp | gmxpre.h |
ewald / pme_gpu_calculate_splines_sycl.h | gmxpre.h |
ewald / pme_gpu_internal.cpp | gmxpre.h |
ewald / pme_gpu_ocl_stubs.cpp | gmxpre.h |
ewald / pme_gpu_program.cpp | gmxpre.h |
ewald / pme_gpu_program_impl.cpp | gmxpre.h |
ewald / pme_gpu_program_impl_ocl.cpp | gmxpre.h |
ewald / pme_gpu_program_impl_sycl.cpp | gmxpre.h |
ewald / pme_gpu_sycl_stubs.cpp | gmxpre.h |
ewald / pme_gpu_timings.cpp | gmxpre.h |
ewald / pme_grid.cpp | gmxpre.h |
ewald / pme_load_balancing.cpp | gmxpre.h |
ewald / pme_only.cpp | gmxpre.h |
ewald / pme_pp.cpp | gmxpre.h |
ewald / pme_pp_comm_gpu_impl.cpp | gmxpre.h |
ewald / pme_redistribute.cpp | gmxpre.h |
ewald / pme_solve.cpp | gmxpre.h |
ewald / pme_solve_sycl.cpp | gmxpre.h |
ewald / pme_spline_work.cpp | gmxpre.h |
ewald / pme_spread.cpp | gmxpre.h |
ewald / pme_spread_sycl.cpp | gmxpre.h |
ewald / tests / pmebsplinetest.cpp | gmxpre.h |
ewald / tests / pmegathertest.cpp | gmxpre.h |
modularsimulator / pmeloadbalancehelper.cpp | gmxpre.h |
ewald / tests / pmesolvetest.cpp | gmxpre.h |
ewald / tests / pmesplinespreadtest.cpp | gmxpre.h |
ewald / tests / pmetestcommon.cpp | gmxpre.h |
compat / tests / pointers.cpp | gmxpre.h |
applied_forces / awh / pointstate.cpp | gmxpre.h |
correlationfunctions / polynomials.cpp | gmxpre.h |
selection / tests / poscalc.cpp | gmxpre.h |
selection / poscalc.cpp | gmxpre.h |
selection / position.cpp | gmxpre.h |
listed_forces / tests / position_restraints.cpp | gmxpre.h |
listed_forces / position_restraints.cpp | gmxpre.h |
gmxana / powerspect.cpp | gmxpre.h |
gmxana / pp2shift.cpp | gmxpre.h |
gmxana / princ.cpp | gmxpre.h |
hardware / printhardware.cpp | gmxpre.h |
mdrunutility / printtime.cpp | gmxpre.h |
utility / programcontext.cpp | gmxpre.h |
modularsimulator / propagator.cpp | gmxpre.h |
nbnxm / prunekerneldispatch.cpp | gmxpre.h |
pulling / tests / pull.cpp | gmxpre.h |
pulling / pull.cpp | gmxpre.h |
pulling / pull_rotation.cpp | gmxpre.h |
pulling / pullcoordexpressionparser.cpp | gmxpre.h |
modularsimulator / pullelement.cpp | gmxpre.h |
pulling / pullutil.cpp | gmxpre.h |
applied_forces / qmmm / tests / qmmm.cpp | gmxpre.h |
applied_forces / qmmm / qmmm.cpp | gmxpre.h |
applied_forces / qmmm / tests / qmmmforceprovider.cpp | gmxpre.h |
applied_forces / qmmm / qmmmforceprovider.cpp | gmxpre.h |
applied_forces / qmmm / qmmmforceprovider_stub.cpp | gmxpre.h |
applied_forces / qmmm / tests / qmmminputgenerator.cpp | gmxpre.h |
applied_forces / qmmm / qmmminputgenerator.cpp | gmxpre.h |
applied_forces / qmmm / tests / qmmmoptions.cpp | gmxpre.h |
applied_forces / qmmm / qmmmoptions.cpp | gmxpre.h |
applied_forces / qmmm / tests / qmmmtopologypreprocessor.cpp | gmxpre.h |
applied_forces / qmmm / qmmmtopologypreprocessor.cpp | gmxpre.h |
tables / quadraticsplinetable.cpp | gmxpre.h |
utility / tests / range.cpp | gmxpre.h |
mdlib / rbin.cpp | gmxpre.h |
trajectoryanalysis / tests / rdf.cpp | gmxpre.h |
trajectoryanalysis / modules / rdf.cpp | gmxpre.h |
applied_forces / awh / read_params.cpp | gmxpre.h |
fileio / tests / readinp.cpp | gmxpre.h |
fileio / readinp.cpp | gmxpre.h |
gmxpreprocess / tests / readir.cpp | gmxpre.h |
gmxpreprocess / readir.cpp | gmxpre.h |
gmxpreprocess / readpull.cpp | gmxpre.h |
gmxpreprocess / readrot.cpp | gmxpre.h |
domdec / redistribute.cpp | gmxpre.h |
modularsimulator / referencetemperaturemanager.cpp | gmxpre.h |
options / tests / repeatingsection.cpp | gmxpre.h |
mdrun / replicaexchange.cpp | gmxpre.h |
tools / report_methods.cpp | gmxpre.h |
tools / tests / report_methods.cpp | gmxpre.h |
taskassignment / reportgpuusage.cpp | gmxpre.h |
coordinateio / tests / requirements.cpp | gmxpre.h |
coordinateio / requirements.cpp | gmxpre.h |
coordinateio / tests / requirements.h | gmxpre.h |
mdrun / rerun.cpp | gmxpre.h |
gmxpreprocess / resall.cpp | gmxpre.h |
mdlib / resethandler.cpp | gmxpre.h |
topology / residuetypes.cpp | gmxpre.h |
taskassignment / resourcedivision.cpp | gmxpre.h |
listed_forces / restcbt.cpp | gmxpre.h |
restraint / restraintmdmodule.cpp | gmxpre.h |
domdec / reversetopology.cpp | gmxpre.h |
mdlib / rf_util.cpp | gmxpre.h |
pbcutil / rmpbc.cpp | gmxpre.h |
onlinehelp / rstparser.cpp | gmxpre.h |
mdrun / runner.cpp | gmxpre.h |
trajectoryanalysis / runnercommon.cpp | gmxpre.h |
trajectoryanalysis / tests / sasa.cpp | gmxpre.h |
trajectoryanalysis / modules / sasa.cpp | gmxpre.h |
simd / tests / scalar.cpp | gmxpre.h |
simd / tests / scalar_math.cpp | gmxpre.h |
simd / tests / scalar_util.cpp | gmxpre.h |
selection / scanner_internal.cpp | gmxpre.h |
random / tests / seed.cpp | gmxpre.h |
random / seed.cpp | gmxpre.h |
trajectoryanalysis / tests / select.cpp | gmxpre.h |
trajectoryanalysis / modules / select.cpp | gmxpre.h |
selection / selection.cpp | gmxpre.h |
selection / tests / selectioncollection.cpp | gmxpre.h |
selection / selectioncollection.cpp | gmxpre.h |
selection / tests / selectionoption.cpp | gmxpre.h |
selection / selectionoption.cpp | gmxpre.h |
selection / selectionoptionbehavior.cpp | gmxpre.h |
selection / selectionoptionmanager.cpp | gmxpre.h |
selection / selelem.cpp | gmxpre.h |
selection / selhelp.cpp | gmxpre.h |
selection / selmethod.cpp | gmxpre.h |
selection / selvalue.cpp | gmxpre.h |
coordinateio / tests / setatoms.cpp | gmxpre.h |
coordinateio / outputadapters / setatoms.cpp | gmxpre.h |
coordinateio / tests / setbothtime.cpp | gmxpre.h |
coordinateio / outputadapters / setforces.cpp | gmxpre.h |
coordinateio / outputadapters / setprecision.cpp | gmxpre.h |
coordinateio / tests / setstarttime.cpp | gmxpre.h |
coordinateio / outputadapters / setstarttime.cpp | gmxpre.h |
coordinateio / tests / settimestep.cpp | gmxpre.h |
coordinateio / outputadapters / settimestep.cpp | gmxpre.h |
mdlib / tests / settle.cpp | gmxpre.h |
mdlib / settle.cpp | gmxpre.h |
mdlib / settle_gpu.cpp | gmxpre.h |
mdlib / settle_gpu.h | gmxpre.h |
mdlib / tests / settletestdata.cpp | gmxpre.h |
mdlib / tests / settletestrunners.cpp | gmxpre.h |
mdlib / tests / settletestrunners_gpu.cpp | gmxpre.h |
coordinateio / outputadapters / setvelocities.cpp | gmxpre.h |
gmxana / sfactor.cpp | gmxpre.h |
mdlib / tests / shake.cpp | gmxpre.h |
mdlib / shake.cpp | gmxpre.h |
commandline / shellcompletions.cpp | gmxpre.h |
mdrun / shellfc.cpp | gmxpre.h |
mdlib / sighandler.cpp | gmxpre.h |
modularsimulator / signallers.cpp | gmxpre.h |
mdlib / sim_util.cpp | gmxpre.h |
simd / tests / simd.cpp | gmxpre.h |
simd / tests / simd4.cpp | gmxpre.h |
simd / tests / simd4_floatingpoint.cpp | gmxpre.h |
simd / tests / simd4_math.cpp | gmxpre.h |
simd / tests / simd4_vector_operations.cpp | gmxpre.h |
simd / tests / simd_floatingpoint.cpp | gmxpre.h |
simd / tests / simd_floatingpoint_util.cpp | gmxpre.h |
simd / tests / simd_integer.cpp | gmxpre.h |
simd / tests / simd_math.cpp | gmxpre.h |
simd / tests / simd_memory.cpp | gmxpre.h |
simd / tests / simd_vector_operations.cpp | gmxpre.h |
mdrun / simulationcontext.cpp | gmxpre.h |
mdrun / simulationinput.cpp | gmxpre.h |
mdrun / simulationinputhandle.cpp | gmxpre.h |
mdlib / tests / simulationsignal.cpp | gmxpre.h |
mdlib / simulationsignal.cpp | gmxpre.h |
modularsimulator / simulatoralgorithm.cpp | gmxpre.h |
mdrun / simulatorbuilder.cpp | gmxpre.h |
selection / sm_compare.cpp | gmxpre.h |
selection / sm_distance.cpp | gmxpre.h |
selection / sm_insolidangle.cpp | gmxpre.h |
selection / sm_keywords.cpp | gmxpre.h |
selection / sm_merge.cpp | gmxpre.h |
selection / sm_permute.cpp | gmxpre.h |
selection / sm_position.cpp | gmxpre.h |
selection / sm_same.cpp | gmxpre.h |
selection / sm_simple.cpp | gmxpre.h |
utility / smalloc.cpp | gmxpre.h |
gmxpreprocess / tests / solvate.cpp | gmxpre.h |
gmxpreprocess / solvate.cpp | gmxpre.h |
linearalgebra / sparsematrix.cpp | gmxpre.h |
gmxpreprocess / specbond.cpp | gmxpre.h |
tables / tests / splinetable.cpp | gmxpre.h |
tables / splineutil.cpp | gmxpre.h |
mdlib / splitter.cpp | gmxpre.h |
mdlib / stat.cpp | gmxpre.h |
mdtypes / state.cpp | gmxpre.h |
mdtypes / state_propagator_data_gpu_impl.cpp | gmxpre.h |
mdtypes / state_propagator_data_gpu_impl.h | gmxpre.h |
mdtypes / state_propagator_data_gpu_impl_gpu.cpp | gmxpre.h |
modularsimulator / statepropagatordata.cpp | gmxpre.h |
statistics / statistics.cpp | gmxpre.h |
mdlib / stophandler.cpp | gmxpre.h |
utility / strconvert.cpp | gmxpre.h |
utility / tests / strconvert.cpp | gmxpre.h |
utility / strdb.cpp | gmxpre.h |
utility / stringstream.cpp | gmxpre.h |
utility / tests / stringtoenumvalueconverter.cpp | gmxpre.h |
utility / stringutil.cpp | gmxpre.h |
utility / tests / stringutil.cpp | gmxpre.h |
simd / support.cpp | gmxpre.h |
trajectoryanalysis / tests / surfacearea.cpp | gmxpre.h |
trajectoryanalysis / modules / surfacearea.cpp | gmxpre.h |
swap / swapcoords.cpp | gmxpre.h |
utility / sycl_version_information.cpp | gmxpre.h |
selection / symrec.cpp | gmxpre.h |
topology / symtab.cpp | gmxpre.h |
topology / tests / symtab.cpp | gmxpre.h |
utility / sysinfo.cpp | gmxpre.h |
random / tests / tabulatednormaldistribution.cpp | gmxpre.h |
random / tabulatednormaldistribution.cpp | gmxpre.h |
taskassignment / taskassignment.cpp | gmxpre.h |
utility / tests / template_mp.cpp | gmxpre.h |
gmxpreprocess / ter_db.cpp | gmxpre.h |
trajectoryanalysis / tests / test_selection.cpp | gmxpre.h |
coordinateio / tests / testmodule.cpp | gmxpre.h |
utility / textreader.cpp | gmxpre.h |
utility / tests / textreader.cpp | gmxpre.h |
utility / textwriter.cpp | gmxpre.h |
utility / tests / textwriter.cpp | gmxpre.h |
mdlib / tgroup.cpp | gmxpre.h |
gmxana / thermochemistry.cpp | gmxpre.h |
mdrunutility / tests / threadaffinity.cpp | gmxpre.h |
mdrunutility / threadaffinity.cpp | gmxpre.h |
mdrunutility / tests / threadaffinity_mpi.cpp | gmxpre.h |
mdrunutility / tests / threadaffinitytest.cpp | gmxpre.h |
mdtypes / threaded_force_buffer.cpp | gmxpre.h |
random / tests / threefry.cpp | gmxpre.h |
fileio / timecontrol.cpp | gmxpre.h |
options / tests / timeunitmanager.cpp | gmxpre.h |
options / timeunitmanager.cpp | gmxpre.h |
timing / tests / timing.cpp | gmxpre.h |
fileio / tests / tngio.cpp | gmxpre.h |
fileio / tngio.cpp | gmxpre.h |
gmxpreprocess / tomorse.cpp | gmxpre.h |
gmxpreprocess / tests / topdirs.cpp | gmxpre.h |
gmxpreprocess / topdirs.cpp | gmxpre.h |
gmxpreprocess / topio.cpp | gmxpre.h |
topology / topology.cpp | gmxpre.h |
modularsimulator / topologyholder.cpp | gmxpre.h |
trajectoryanalysis / topologyinformation.cpp | gmxpre.h |
trajectoryanalysis / tests / topologyinformation.cpp | gmxpre.h |
gmxpreprocess / toppush.cpp | gmxpre.h |
gmxpreprocess / topshake.cpp | gmxpre.h |
topology / topsort.cpp | gmxpre.h |
topology / tests / topsort.cpp | gmxpre.h |
gmxpreprocess / toputil.cpp | gmxpre.h |
selection / tests / toputils.cpp | gmxpre.h |
mdrun / tpi.cpp | gmxpre.h |
fileio / tpxio.cpp | gmxpre.h |
trajectoryanalysis / tests / trajectory.cpp | gmxpre.h |
trajectoryanalysis / modules / trajectory.cpp | gmxpre.h |
mdlib / trajectory_writing.cpp | gmxpre.h |
modularsimulator / trajectoryelement.cpp | gmxpre.h |
trajectory / trajectoryframe.cpp | gmxpre.h |
pulling / transformationcoordinate.cpp | gmxpre.h |
options / tests / treesupport.cpp | gmxpre.h |
options / treesupport.cpp | gmxpre.h |
tools / trjcat.cpp | gmxpre.h |
tools / trjconv.cpp | gmxpre.h |
tools / tests / trjconv.cpp | gmxpre.h |
fileio / trrio.cpp | gmxpre.h |
fileio / trxio.cpp | gmxpre.h |
tools / tune_pme.cpp | gmxpre.h |
utility / txtdump.cpp | gmxpre.h |
gpu_utils / tests / typecasts.cpp | gmxpre.h |
gpu_utils / tests / typecasts_runner.cpp | gmxpre.h |
gpu_utils / tests / typecasts_runner.h | gmxpre.h |
utility / tests / typetraits.cpp | gmxpre.h |
random / tests / uniformintdistribution.cpp | gmxpre.h |
random / tests / uniformrealdistribution.cpp | gmxpre.h |
trajectoryanalysis / tests / unionfind.cpp | gmxpre.h |
mdlib / update.cpp | gmxpre.h |
mdlib / update_constrain_gpu_impl.cpp | gmxpre.h |
mdlib / update_constrain_gpu_impl.h | gmxpre.h |
mdlib / update_constrain_gpu_impl_stubs.cpp | gmxpre.h |
mdlib / update_constrain_gpu_internal.h | gmxpre.h |
mdlib / update_constrain_gpu_internal_sycl.cpp | gmxpre.h |
mdlib / update_vv.cpp | gmxpre.h |
mdlib / tests / updategroups.cpp | gmxpre.h |
mdlib / updategroups.cpp | gmxpre.h |
mdlib / tests / updategroupscog.cpp | gmxpre.h |
mdlib / updategroupscog.cpp | gmxpre.h |
taskassignment / tests / usergpuids.cpp | gmxpre.h |
taskassignment / usergpuids.cpp | gmxpre.h |
mimic / utilities.cpp | gmxpre.h |
math / utilities.cpp | gmxpre.h |
domdec / utility.cpp | gmxpre.h |
mdlib / vcm.cpp | gmxpre.h |
math / veccompare.cpp | gmxpre.h |
math / vecdump.cpp | gmxpre.h |
math / tests / vectypes.cpp | gmxpre.h |
modularsimulator / velocityscalingtemperaturecoupling.cpp | gmxpre.h |
commandline / viewit.cpp | gmxpre.h |
fileio / vmdio.cpp | gmxpre.h |
mdlib / vsite.cpp | gmxpre.h |
gmxpreprocess / vsite_parm.cpp | gmxpre.h |
mdlib / wall.cpp | gmxpre.h |
timing / wallcycle.cpp | gmxpre.h |
timing / walltime_accounting.cpp | gmxpre.h |
fileio / warninp.cpp | gmxpre.h |
mdlib / tests / wholemoleculetransform.cpp | gmxpre.h |
mdlib / wholemoleculetransform.cpp | gmxpre.h |
fileio / writeps.cpp | gmxpre.h |
gmxpreprocess / x2top.cpp | gmxpre.h |
fileio / xdrd.cpp | gmxpre.h |
gmxpreprocess / xlate.cpp | gmxpre.h |
fileio / xtcio.cpp | gmxpre.h |
fileio / tests / xvgio.cpp | gmxpre.h |
fileio / xvgr.cpp | gmxpre.h |