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src
gromacs
gmxpreprocess
gmxpreprocess → api Relation
File in src/gromacs/gmxpreprocess
Includes file in api
add_par.cpp
legacy
/
include
/
gromacs
/
utility
/
smalloc.h
add_par.h
legacy
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include
/
gromacs
/
utility
/
real.h
calch.cpp
legacy
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include
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gromacs
/
math
/
functions.h
convparm.cpp
legacy
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include
/
gromacs
/
math
/
functions.h
convparm.cpp
legacy
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include
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gromacs
/
mdtypes
/
md_enums.h
convparm.cpp
legacy
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include
/
gromacs
/
utility
/
smalloc.h
convparm.h
legacy
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include
/
gromacs
/
utility
/
real.h
editconf.cpp
legacy
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include
/
gromacs
/
math
/
functions.h
editconf.cpp
legacy
/
include
/
gromacs
/
utility
/
futil.h
editconf.cpp
legacy
/
include
/
gromacs
/
utility
/
gmxassert.h
editconf.cpp
legacy
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include
/
gromacs
/
utility
/
smalloc.h
fflibutil.cpp
legacy
/
include
/
gromacs
/
utility
/
exceptions.h
fflibutil.cpp
legacy
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include
/
gromacs
/
utility
/
futil.h
fflibutil.cpp
legacy
/
include
/
gromacs
/
utility
/
smalloc.h
fflibutil.cpp
legacy
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include
/
gromacs
/
utility
/
stringutil.h
fflibutil.h
legacy
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include
/
gromacs
/
utility
/
basedefinitions.h
gen_ad.cpp
legacy
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include
/
gromacs
/
utility
/
enumerationhelpers.h
gen_ad.cpp
legacy
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include
/
gromacs
/
utility
/
smalloc.h
tests
/
gen_maxwell_velocities.cpp
legacy
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include
/
gromacs
/
utility
/
futil.h
gen_maxwell_velocities.cpp
legacy
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include
/
gromacs
/
utility
/
smalloc.h
gen_maxwell_velocities.h
legacy
/
include
/
gromacs
/
utility
/
real.h
gen_vsite.cpp
legacy
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include
/
gromacs
/
utility
/
basedefinitions.h
gen_vsite.cpp
legacy
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include
/
gromacs
/
math
/
functions.h
gen_vsite.cpp
legacy
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include
/
gromacs
/
utility
/
futil.h
gen_vsite.cpp
legacy
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include
/
gromacs
/
mdtypes
/
md_enums.h
gen_vsite.cpp
legacy
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include
/
gromacs
/
utility
/
real.h
gen_vsite.cpp
legacy
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include
/
gromacs
/
utility
/
smalloc.h
gen_vsite.cpp
legacy
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include
/
gromacs
/
topology
/
symtab.h
gen_vsite.h
legacy
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include
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gromacs
/
utility
/
real.h
genconf.cpp
legacy
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include
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gromacs
/
mdtypes
/
md_enums.h
genconf.cpp
legacy
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include
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gromacs
/
utility
/
smalloc.h
genhydro.cpp
legacy
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include
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gromacs
/
utility
/
exceptions.h
genhydro.cpp
legacy
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include
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gromacs
/
utility
/
futil.h
genhydro.cpp
legacy
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include
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gromacs
/
utility
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smalloc.h
genhydro.cpp
legacy
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include
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gromacs
/
topology
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symtab.h
genion.cpp
legacy
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include
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gromacs
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utility
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arrayref.h
genion.cpp
legacy
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include
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gromacs
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utility
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basedefinitions.h
tests
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genion.cpp
legacy
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include
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gromacs
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utility
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futil.h
genion.cpp
legacy
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include
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gromacs
/
utility
/
futil.h
genion.cpp
legacy
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include
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gromacs
/
utility
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smalloc.h
genrestr.cpp
legacy
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include
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gromacs
/
utility
/
futil.h
genrestr.cpp
legacy
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include
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gromacs
/
utility
/
smalloc.h
gmxcpp.cpp
legacy
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include
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gromacs
/
utility
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arrayref.h
gmxcpp.cpp
legacy
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include
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gromacs
/
utility
/
futil.h
gmxcpp.cpp
legacy
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include
/
gromacs
/
utility
/
gmxassert.h
tests
/
gpp_atomtype.cpp
legacy
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include
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gromacs
/
utility
/
enumerationhelpers.h
gpp_atomtype.cpp
legacy
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include
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gromacs
/
utility
/
smalloc.h
tests
/
gpp_atomtype.cpp
legacy
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include
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gromacs
/
topology
/
symtab.h
gpp_atomtype.cpp
legacy
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include
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gromacs
/
topology
/
symtab.h
gpp_atomtype.h
legacy
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include
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gromacs
/
utility
/
real.h
tests
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gpp_bond_atomtype.cpp
legacy
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include
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gromacs
/
utility
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enumerationhelpers.h
gpp_bond_atomtype.cpp
legacy
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include
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gromacs
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utility
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smalloc.h
tests
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gpp_bond_atomtype.cpp
legacy
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include
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gromacs
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topology
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symtab.h
gpp_bond_atomtype.cpp
legacy
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include
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gromacs
/
topology
/
symtab.h
gpp_nextnb.cpp
legacy
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include
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gromacs
/
utility
/
gmxassert.h
gpp_nextnb.cpp
legacy
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include
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gromacs
/
utility
/
smalloc.h
grompp.cpp
legacy
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include
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gromacs
/
utility
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exceptions.h
grompp.cpp
legacy
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include
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gromacs
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math
/
functions.h
grompp.cpp
legacy
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include
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gromacs
/
utility
/
futil.h
grompp.cpp
legacy
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include
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gromacs
/
utility
/
gmxassert.h
grompp.cpp
legacy
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include
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gromacs
/
utility
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listoflists.h
grompp.cpp
legacy
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include
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gromacs
/
mdtypes
/
md_enums.h
grompp.cpp
legacy
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include
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gromacs
/
utility
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smalloc.h
grompp.cpp
legacy
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include
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gromacs
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topology
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symtab.h
tests
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grompp_directives.cpp
legacy
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include
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gromacs
/
utility
/
futil.h
grompp_impl.h
legacy
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include
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gromacs
/
utility
/
basedefinitions.h
grompp_impl.h
legacy
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include
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gromacs
/
utility
/
exceptions.h
grompp_impl.h
legacy
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include
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gromacs
/
utility
/
listoflists.h
grompp_impl.h
legacy
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include
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gromacs
/
utility
/
real.h
h_db.cpp
legacy
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include
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gromacs
/
utility
/
futil.h
h_db.cpp
legacy
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include
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gromacs
/
utility
/
smalloc.h
h_db.cpp
legacy
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include
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gromacs
/
utility
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stringutil.h
h_db.h
legacy
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include
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gromacs
/
utility
/
arrayref.h
hackblock.cpp
legacy
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include
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gromacs
/
utility
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arrayref.h
hackblock.cpp
legacy
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include
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gromacs
/
utility
/
enumerationhelpers.h
hackblock.cpp
legacy
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include
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gromacs
/
utility
/
exceptions.h
hackblock.cpp
legacy
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include
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gromacs
/
utility
/
gmxassert.h
hackblock.cpp
legacy
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include
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gromacs
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mdtypes
/
md_enums.h
hackblock.cpp
legacy
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include
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gromacs
/
utility
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smalloc.h
hackblock.cpp
legacy
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include
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gromacs
/
topology
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symtab.h
hackblock.h
legacy
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include
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gromacs
/
utility
/
enumerationhelpers.h
hizzie.cpp
legacy
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include
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gromacs
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math
/
functions.h
hizzie.cpp
legacy
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include
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gromacs
/
utility
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smalloc.h
hizzie.cpp
legacy
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include
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gromacs
/
topology
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symtab.h
hizzie.h
legacy
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include
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gromacs
/
utility
/
real.h
insert_molecules.cpp
legacy
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include
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gromacs
/
options
/
basicoptions.h
insert_molecules.cpp
legacy
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include
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gromacs
/
utility
/
enumerationhelpers.h
insert_molecules.cpp
legacy
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include
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gromacs
/
utility
/
exceptions.h
insert_molecules.cpp
legacy
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include
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gromacs
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options
/
filenameoption.h
insert_molecules.cpp
legacy
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include
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gromacs
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math
/
functions.h
insert_molecules.cpp
legacy
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include
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gromacs
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options
/
ioptionscontainer.h
insert_molecules.cpp
legacy
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include
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gromacs
/
selection
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nbsearch.h
insert_molecules.cpp
legacy
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include
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gromacs
/
selection
/
selection.h
insert_molecules.cpp
legacy
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include
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gromacs
/
selection
/
selectioncollection.h
insert_molecules.cpp
legacy
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include
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gromacs
/
selection
/
selectionoption.h
insert_molecules.cpp
legacy
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include
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gromacs
/
selection
/
selectionoptionbehavior.h
insert_molecules.cpp
legacy
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include
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gromacs
/
utility
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smalloc.h
insert_molecules.cpp
legacy
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include
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gromacs
/
topology
/
symtab.h
makeexclusiondistances.h
legacy
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include
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gromacs
/
utility
/
real.h
nm2type.cpp
legacy
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include
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gromacs
/
utility
/
futil.h
nm2type.cpp
legacy
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include
/
gromacs
/
mdtypes
/
md_enums.h
nm2type.cpp
legacy
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include
/
gromacs
/
utility
/
smalloc.h
pdb2gmx.cpp
legacy
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include
/
gromacs
/
options
/
basicoptions.h
pdb2gmx.cpp
legacy
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include
/
gromacs
/
utility
/
enumerationhelpers.h
pdb2gmx.cpp
legacy
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include
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gromacs
/
utility
/
exceptions.h
pdb2gmx.cpp
legacy
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include
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gromacs
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options
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filenameoption.h
tests
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pdb2gmx.cpp
legacy
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include
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gromacs
/
utility
/
futil.h
pdb2gmx.cpp
legacy
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include
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gromacs
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options
/
ioptionscontainer.h
pdb2gmx.cpp
legacy
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include
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gromacs
/
utility
/
smalloc.h
tests
/
pdb2gmx.cpp
legacy
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include
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gromacs
/
utility
/
stringutil.h
pdb2gmx.cpp
legacy
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include
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gromacs
/
utility
/
stringutil.h
pdb2gmx.cpp
legacy
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include
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gromacs
/
topology
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symtab.h
pdb2top.cpp
legacy
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include
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gromacs
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utility
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enumerationhelpers.h
pdb2top.cpp
legacy
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include
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gromacs
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utility
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exceptions.h
pdb2top.cpp
legacy
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include
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gromacs
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math
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functions.h
pdb2top.cpp
legacy
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include
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gromacs
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utility
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futil.h
pdb2top.cpp
legacy
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include
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gromacs
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utility
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programcontext.h
pdb2top.cpp
legacy
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include
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gromacs
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utility
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smalloc.h
pdb2top.cpp
legacy
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include
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gromacs
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utility
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stringutil.h
pdb2top.cpp
legacy
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include
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gromacs
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topology
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symtab.h
pdb2top.h
legacy
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include
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gromacs
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utility
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enumerationhelpers.h
pgutil.h
legacy
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include
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gromacs
/
utility
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arrayref.h
pgutil.h
legacy
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include
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gromacs
/
utility
/
basedefinitions.h
pgutil.h
legacy
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include
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gromacs
/
utility
/
real.h
readir.cpp
legacy
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include
/
gromacs
/
utility
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arrayref.h
readir.cpp
legacy
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include
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gromacs
/
utility
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exceptions.h
readir.cpp
legacy
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include
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gromacs
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math
/
functions.h
readir.cpp
legacy
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include
/
gromacs
/
utility
/
gmxassert.h
readir.cpp
legacy
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include
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gromacs
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selection
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indexutil.h
readir.cpp
legacy
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include
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gromacs
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mdtypes
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md_enums.h
readir.cpp
legacy
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include
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gromacs
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options
/
options.h
readir.cpp
legacy
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include
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gromacs
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utility
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smalloc.h
tests
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readir.cpp
legacy
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include
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gromacs
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utility
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stringutil.h
readir.cpp
legacy
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include
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gromacs
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utility
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stringutil.h
readir.cpp
legacy
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include
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gromacs
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topology
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symtab.h
tests
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readir.cpp
legacy
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include
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gromacs
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utility
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unique_cptr.h
readir.h
legacy
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include
/
gromacs
/
utility
/
arrayref.h
readir.h
legacy
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include
/
gromacs
/
utility
/
real.h
readpull.cpp
legacy
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include
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gromacs
/
utility
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arrayref.h
readpull.cpp
legacy
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include
/
gromacs
/
utility
/
basedefinitions.h
readpull.cpp
legacy
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include
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gromacs
/
utility
/
exceptions.h
readpull.cpp
legacy
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include
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gromacs
/
utility
/
futil.h
readpull.cpp
legacy
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include
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gromacs
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mdtypes
/
md_enums.h
readpull.cpp
legacy
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include
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gromacs
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utility
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smalloc.h
readpull.cpp
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include
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gromacs
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utility
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stringutil.h
readrot.cpp
legacy
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include
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gromacs
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utility
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arrayref.h
readrot.cpp
legacy
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include
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gromacs
/
utility
/
futil.h
readrot.cpp
legacy
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include
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gromacs
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mdtypes
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md_enums.h
readrot.cpp
legacy
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include
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gromacs
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utility
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smalloc.h
readrot.cpp
legacy
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include
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gromacs
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utility
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stringutil.h
resall.cpp
legacy
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include
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gromacs
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utility
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enumerationhelpers.h
resall.cpp
legacy
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include
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gromacs
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utility
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futil.h
resall.cpp
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include
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gromacs
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topology
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symtab.h
resall.h
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include
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gromacs
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utility
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arrayref.h
solvate.cpp
legacy
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include
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gromacs
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math
/
functions.h
tests
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solvate.cpp
legacy
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include
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gromacs
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utility
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futil.h
solvate.cpp
legacy
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include
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gromacs
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utility
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futil.h
solvate.cpp
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include
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gromacs
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utility
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gmxassert.h
solvate.cpp
legacy
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include
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gromacs
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selection
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nbsearch.h
solvate.cpp
legacy
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include
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gromacs
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utility
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smalloc.h
specbond.cpp
legacy
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include
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gromacs
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utility
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arrayref.h
specbond.cpp
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include
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gromacs
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utility
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smalloc.h
specbond.cpp
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include
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gromacs
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topology
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symtab.h
specbond.h
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include
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gromacs
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topology
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symtab.h
ter_db.cpp
legacy
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include
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gromacs
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utility
/
enumerationhelpers.h
ter_db.cpp
legacy
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include
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gromacs
/
utility
/
exceptions.h
ter_db.cpp
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include
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gromacs
/
utility
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futil.h
ter_db.cpp
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include
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gromacs
/
utility
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smalloc.h
ter_db.cpp
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include
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gromacs
/
utility
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stringutil.h
tomorse.cpp
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include
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gromacs
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utility
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futil.h
tomorse.cpp
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include
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gromacs
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utility
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smalloc.h
tests
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topdirs.cpp
legacy
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include
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gromacs
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utility
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enumerationhelpers.h
topdirs.cpp
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include
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gromacs
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utility
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enumerationhelpers.h
topdirs.cpp
legacy
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include
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gromacs
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utility
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smalloc.h
topio.cpp
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include
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gromacs
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utility
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enumerationhelpers.h
topio.cpp
legacy
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include
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gromacs
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utility
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futil.h
topio.cpp
legacy
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include
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gromacs
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utility
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gmxassert.h
topio.cpp
legacy
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include
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gromacs
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mdtypes
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md_enums.h
topio.cpp
legacy
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include
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gromacs
/
utility
/
pleasecite.h
topio.cpp
legacy
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include
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gromacs
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utility
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smalloc.h
topio.cpp
legacy
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include
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gromacs
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utility
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stringutil.h
topio.cpp
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include
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gromacs
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topology
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symtab.h
topio.h
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include
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gromacs
/
utility
/
real.h
toppush.cpp
legacy
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include
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gromacs
/
utility
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arrayref.h
toppush.cpp
legacy
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include
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gromacs
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utility
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enumerationhelpers.h
toppush.cpp
legacy
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include
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gromacs
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math
/
functions.h
toppush.cpp
legacy
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include
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gromacs
/
utility
/
gmxassert.h
toppush.cpp
legacy
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include
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gromacs
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mdtypes
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md_enums.h
toppush.cpp
legacy
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include
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gromacs
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utility
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smalloc.h
toppush.cpp
legacy
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include
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gromacs
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utility
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stringutil.h
toppush.cpp
legacy
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include
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gromacs
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topology
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symtab.h
toppush.h
legacy
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include
/
gromacs
/
utility
/
real.h
topshake.cpp
legacy
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include
/
gromacs
/
utility
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smalloc.h
toputil.cpp
legacy
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include
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