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src
gromacs
mdrun
mdrun → api Relation
File in src/gromacs/mdrun
Includes file in api
legacymdrunoptions.cpp
legacy
/
include
/
gromacs
/
utility
/
arrayref.h
legacymdrunoptions.cpp
legacy
/
include
/
gromacs
/
math
/
functions.h
legacysimulator.cpp
legacy
/
include
/
gromacs
/
utility
/
exceptions.h
legacysimulator.cpp
legacy
/
include
/
gromacs
/
mdtypes
/
md_enums.h
legacysimulator.h
legacy
/
include
/
gromacs
/
utility
/
basedefinitions.h
legacysimulator.h
legacy
/
include
/
gromacs
/
utility
/
real.h
md.cpp
legacy
/
include
/
gromacs
/
utility
/
basedefinitions.h
md.cpp
legacy
/
include
/
gromacs
/
math
/
functions.h
md.cpp
legacy
/
include
/
gromacs
/
mdtypes
/
md_enums.h
md.cpp
legacy
/
include
/
gromacs
/
utility
/
real.h
md.cpp
legacy
/
include
/
gromacs
/
utility
/
smalloc.h
mdmodules.cpp
legacy
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include
/
gromacs
/
options
/
options.h
mdmodules.cpp
legacy
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include
/
gromacs
/
utility
/
smalloc.h
membedholder.cpp
legacy
/
include
/
gromacs
/
utility
/
real.h
membedholder.h
legacy
/
include
/
gromacs
/
utility
/
real.h
mimic.cpp
legacy
/
include
/
gromacs
/
utility
/
basedefinitions.h
mimic.cpp
legacy
/
include
/
gromacs
/
math
/
functions.h
mimic.cpp
legacy
/
include
/
gromacs
/
mdtypes
/
md_enums.h
mimic.cpp
legacy
/
include
/
gromacs
/
utility
/
real.h
minimize.cpp
legacy
/
include
/
gromacs
/
utility
/
exceptions.h
minimize.cpp
legacy
/
include
/
gromacs
/
math
/
functions.h
minimize.cpp
legacy
/
include
/
gromacs
/
mdtypes
/
md_enums.h
minimize.cpp
legacy
/
include
/
gromacs
/
utility
/
smalloc.h
replicaexchange.cpp
legacy
/
include
/
gromacs
/
utility
/
enumerationhelpers.h
replicaexchange.cpp
legacy
/
include
/
gromacs
/
mdtypes
/
md_enums.h
replicaexchange.cpp
legacy
/
include
/
gromacs
/
utility
/
pleasecite.h
replicaexchange.cpp
legacy
/
include
/
gromacs
/
utility
/
smalloc.h
replicaexchange.h
legacy
/
include
/
gromacs
/
utility
/
basedefinitions.h
replicaexchange.h
legacy
/
include
/
gromacs
/
utility
/
real.h
rerun.cpp
legacy
/
include
/
gromacs
/
utility
/
basedefinitions.h
rerun.cpp
legacy
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include
/
gromacs
/
utility
/
exceptions.h
rerun.cpp
legacy
/
include
/
gromacs
/
math
/
functions.h
rerun.cpp
legacy
/
include
/
gromacs
/
mdtypes
/
md_enums.h
rerun.cpp
legacy
/
include
/
gromacs
/
utility
/
real.h
runner.cpp
legacy
/
include
/
gromacs
/
utility
/
exceptions.h
runner.cpp
legacy
/
include
/
gromacs
/
math
/
functions.h
runner.cpp
legacy
/
include
/
gromacs
/
utility
/
gmxassert.h
runner.cpp
legacy
/
include
/
gromacs
/
mdtypes
/
md_enums.h
runner.cpp
legacy
/
include
/
gromacs
/
utility
/
pleasecite.h
runner.cpp
legacy
/
include
/
gromacs
/
utility
/
programcontext.h
runner.cpp
legacy
/
include
/
gromacs
/
restraint
/
restraintpotential.h
runner.cpp
legacy
/
include
/
gromacs
/
utility
/
smalloc.h
runner.cpp
legacy
/
include
/
gromacs
/
utility
/
stringutil.h
runner.h
legacy
/
include
/
gromacs
/
utility
/
arrayref.h
runner.h
legacy
/
include
/
gromacs
/
utility
/
basedefinitions.h
runner.h
legacy
/
include
/
gromacs
/
utility
/
real.h
shellfc.cpp
legacy
/
include
/
gromacs
/
utility
/
arrayref.h
shellfc.cpp
legacy
/
include
/
gromacs
/
math
/
functions.h
shellfc.cpp
legacy
/
include
/
gromacs
/
utility
/
gmxassert.h
shellfc.cpp
legacy
/
include
/
gromacs
/
mdtypes
/
md_enums.h
shellfc.h
legacy
/
include
/
gromacs
/
utility
/
enumerationhelpers.h
simulationcontext.cpp
legacy
/
include
/
gromacs
/
utility
/
gmxassert.h
tpi.cpp
legacy
/
include
/
gromacs
/
utility
/
gmxassert.h
tpi.cpp
legacy
/
include
/
gromacs
/
mdtypes
/
md_enums.h
tpi.cpp
legacy
/
include
/
gromacs
/
utility
/
smalloc.h
tpi.cpp
legacy
/
include
/
gromacs
/
utility
/
stringutil.h
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