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mdrun
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tests
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checkpoint.cpp
utility
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include
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utility
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strconvert.h
mdrun
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tests
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domain_decomposition.cpp
utility
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include
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gromacs
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utility
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message_string_collector.h
mdrun
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tests
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energycomparison.cpp
utility
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include
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gromacs
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utility
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basenetwork.h
mdrun
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tests
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energycomparison.cpp
utility
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include
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gromacs
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utility
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strconvert.h
mdrun
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tests
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ewaldsurfaceterm.cpp
utility
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include
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gromacs
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utility
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basenetwork.h
mdrun
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tests
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ewaldsurfaceterm.cpp
utility
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include
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gromacs
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utility
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filestream.h
mdrun
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tests
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ewaldsurfaceterm.cpp
utility
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include
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gromacs
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utility
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strconvert.h
mdrun
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tests
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freeenergy.cpp
utility
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include
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gromacs
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utility
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filestream.h
mdrun
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tests
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freeenergy.cpp
utility
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include
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gromacs
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utility
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path.h
gmx.cpp
commandline
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cmdlineinit.h
gmx.cpp
commandline
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cmdlinemodulemanager.h
gmx.cpp
trajectoryanalysis
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modules.h
gmx.cpp
selection
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selhelp.h
mdrun
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tests
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helpwriting.cpp
commandline
/
cmdlinehelpcontext.h
mdrun
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tests
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helpwriting.cpp
utility
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include
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gromacs
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utility
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stringstream.h
mdrun
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tests
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helpwriting.cpp
utility
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include
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gromacs
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utility
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textwriter.h
legacymodules.cpp
commandline
/
cmdlinemodule.h
legacymodules.cpp
commandline
/
cmdlinemodulemanager.h
legacymodules.cpp
commandline
/
cmdlineoptionsmodule.h
mdrun
/
mdrun.cpp
utility
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include
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gromacs
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utility
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basenetwork.h
mdrun
/
mdrun.cpp
mdrunutility
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handlerestart.h
mdrun
/
mdrun.cpp
mdrun
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legacymdrunoptions.h
mdrun
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mdrun.cpp
mdrunutility
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logging.h
mdrun
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mdrun.cpp
mdrunutility
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multisim.h
mdrun
/
mdrun.cpp
domdec
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options.h
mdrun
/
mdrun.cpp
commandline
/
pargs.h
mdrun
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mdrun.cpp
utility
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include
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gromacs
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utility
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physicalnodecommunicator.h
mdrun
/
mdrun.cpp
mdrun
/
runner.h
mdrun
/
mdrun.cpp
mdrun
/
simulationcontext.h
mdrun_main.cpp
commandline
/
cmdlinemodule.h
mdrun_main.cpp
commandline
/
cmdlinemodulemanager.h
mdrun
/
mdrun_main.h
utility
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include
/
gromacs
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utility
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gmxmpi.h
mdrun
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tests
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mimic.cpp
utility
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include
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gromacs
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utility
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basenetwork.h
mdrun
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tests
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minimize.cpp
utility
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include
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gromacs
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utility
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basenetwork.h
mdrun
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tests
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moduletest.cpp
utility
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include
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gromacs
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utility
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basenetwork.h
mdrun
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tests
/
moduletest.cpp
utility
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include
/
gromacs
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utility
/
gmxmpi.h
mdrun
/
tests
/
moduletest.cpp
utility
/
include
/
gromacs
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utility
/
physicalnodecommunicator.h
mdrun
/
tests
/
moduletest.cpp
utility
/
include
/
gromacs
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utility
/
textwriter.h
mdrun
/
tests
/
moduletest.h
utility
/
include
/
gromacs
/
utility
/
gmxmpi.h
mdrun
/
tests
/
multisimtest.cpp
utility
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include
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gromacs
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utility
/
basenetwork.h
mdrun
/
tests
/
multisimtest.cpp
utility
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include
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gromacs
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utility
/
path.h
mdrun
/
nonbonded_bench.cpp
utility
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include
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gromacs
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utility
/
arraysize.h
mdrun
/
nonbonded_bench.cpp
nbnxm
/
benchmark
/
bench_setup.h
mdrun
/
nonbonded_bench.cpp
commandline
/
cmdlineoptionsmodule.h
mdrun
/
nonbonded_bench.cpp
ewald
/
ewald_utils.h
mdrun
/
tests
/
nonbonded_bench.cpp
utility
/
include
/
gromacs
/
utility
/
textreader.h
mdrun
/
nonbonded_bench.h
commandline
/
cmdlineoptionsmodule.h
mdrun
/
tests
/
normalmodes.cpp
utility
/
include
/
gromacs
/
utility
/
basenetwork.h
mdrun
/
tests
/
normalmodes.cpp
utility
/
include
/
gromacs
/
utility
/
filestream.h
mdrun
/
tests
/
outputfiles.cpp
utility
/
include
/
gromacs
/
utility
/
path.h
mdrun
/
tests
/
periodicactions.h
utility
/
include
/
gromacs
/
utility
/
strconvert.h
mdrun
/
tests
/
pmetest.cpp
utility
/
include
/
gromacs
/
utility
/
basenetwork.h
mdrun
/
tests
/
pmetest.cpp
utility
/
include
/
gromacs
/
utility
/
cstringutil.h
mdrun
/
tests
/
pmetest.cpp
utility
/
include
/
gromacs
/
utility
/
message_string_collector.h
mdrun
/
tests
/
pmetest.cpp
ewald
/
pme.h
mdrun
/
tests
/
replicaexchange.cpp
utility
/
include
/
gromacs
/
utility
/
basenetwork.h
mdrun
/
tests
/
replicaexchange.cpp
utility
/
include
/
gromacs
/
utility
/
filestream.h
mdrun
/
tests
/
replicaexchange.cpp
utility
/
include
/
gromacs
/
utility
/
path.h
mdrun
/
tests
/
replicaexchange_equivalence.cpp
utility
/
include
/
gromacs
/
utility
/
basenetwork.h
mdrun
/
tests
/
replicaexchange_equivalence.cpp
utility
/
include
/
gromacs
/
utility
/
filestream.h
mdrun
/
tests
/
replicaexchange_equivalence.cpp
utility
/
include
/
gromacs
/
utility
/
path.h
mdrun
/
tests
/
rerun.cpp
utility
/
include
/
gromacs
/
utility
/
strconvert.h
mdrun
/
tests
/
simple_mdrun.cpp
utility
/
include
/
gromacs
/
utility
/
basenetwork.h
mdrun
/
tests
/
simple_mdrun.cpp
utility
/
include
/
gromacs
/
utility
/
filestream.h
mdrun
/
tests
/
simple_mdrun.cpp
utility
/
include
/
gromacs
/
utility
/
strconvert.h
mdrun
/
tests
/
tabulated_bonded_interactions.cpp
utility
/
include
/
gromacs
/
utility
/
textwriter.h
mdrun
/
tests
/
termination.cpp
utility
/
include
/
gromacs
/
utility
/
path.h
mdrun
/
tests
/
termination.cpp
utility
/
include
/
gromacs
/
utility
/
textreader.h
mdrun
/
tests
/
terminationhelper.cpp
utility
/
include
/
gromacs
/
utility
/
path.h
mdrun
/
tests
/
tpitest.cpp
utility
/
include
/
gromacs
/
utility
/
textreader.h
mdrun
/
tests
/
trajectorycomparison.cpp
utility
/
include
/
gromacs
/
utility
/
strconvert.h
mdrun
/
tests
/
virtualsites.cpp
utility
/
include
/
gromacs
/
utility
/
strconvert.h
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