- a -
- absoluteTolerance()
: gmx::test::FloatingPointTolerance
- AbstractAnalysisArrayData()
: gmx::AbstractAnalysisArrayData
- AbstractAnalysisData()
: gmx::AbstractAnalysisData
- AbstractAverageHistogram()
: gmx::AbstractAverageHistogram
- AbstractOption()
: gmx::AbstractOption
- AbstractOptionStorage()
: gmx::AbstractOptionStorage
- AbstractPlotModule()
: gmx::AbstractPlotModule
- acceptOptions()
: gmx::OptionsIterator
, gmx::OptionsModifyingIterator
- acceptSubSections()
: gmx::OptionsIterator
, gmx::OptionsModifyingIterator
- add()
: gmx::OptionManagerContainer
- addColumn()
: gmx::TextTableFormatter
- addColumnHelpTextBlock()
: gmx::TextTableFormatter
- addColumnLine()
: gmx::TextTableFormatter
- addColumnModule()
: gmx::AbstractAnalysisData
- addCurrentExceptionAsNested()
: gmx::ExceptionInitializer
- addDefaultFileNameOption()
: gmx::FileNameOptionManager
- addExistingFile()
: gmx::test::TestFileInputRedirector
- addFrame()
: gmx::test::AnalysisDataTestInput
- addFrameWithValueAndError()
: gmx::test::AnalysisDataTestInput
- addFrameWithValues()
: gmx::test::AnalysisDataTestInput
- addHelpTopic()
: gmx::CommandLineModuleManager
- addLink()
: gmx::HelpLinks
- addManager()
: gmx::Options
- addModule()
: gmx::CommandLineModuleGroup
, gmx::AbstractAnalysisData
, gmx::AnalysisDataModuleManager
, gmx::CommandLineModuleManager
- addModuleCMain()
: gmx::CommandLineModuleManager
- addModuleGroup()
: gmx::CommandLineModuleManager
- addModuleWithDescription()
: gmx::CommandLineModuleGroup
- addNested()
: gmx::ExceptionInitializer
- addOption()
: gmx::Options
, gmx::test::CommandLine
- addOptions()
: gmx::AnalysisDataPlotSettings
- addPointSet()
: gmx::test::AnalysisDataTestInputFrame
- addPointSetWithValueAndError()
: gmx::test::AnalysisDataTestInputFrame
- addPointSetWithValues()
: gmx::test::AnalysisDataTestInputFrame
- addReferenceCheckerModule()
: gmx::test::AnalysisDataTestFixture
- addStaticCheckerModule()
: gmx::test::AnalysisDataTestFixture
- addStaticColumnCheckerModule()
: gmx::test::AnalysisDataTestFixture
- addStaticParallelCheckerModule()
: gmx::test::AnalysisDataTestFixture
- addStaticStorageCheckerModule()
: gmx::test::AnalysisDataTestFixture
- addSubSection()
: gmx::Options
- addSubTopic()
: gmx::AbstractCompositeHelpTopic
- addTimeUnitOption()
: gmx::TimeUnitManager
- addValue()
: gmx::test::AnalysisDataTestInputPointSet
, gmx::OptionStorageTemplate< T >
- addValueWithError()
: gmx::test::AnalysisDataTestInputPointSet
- allocateValues()
: gmx::AbstractAnalysisArrayData
- allowedValues()
: gmx::StringOptionInfo
- allowEmpty()
: gmx::SelectionOption
- allowMissing()
: gmx::FileNameOption
, gmx::FileNameOptionInfo
- allowMultiple()
: gmx::OptionTemplate< T, U >
- allPresent()
: gmx::AnalysisDataPointSetRef
, gmx::AnalysisDataFrameRef
- AnalysisArrayData()
: gmx::AnalysisArrayData
- AnalysisData()
: gmx::AnalysisData
- AnalysisDataBinAverageModule()
: gmx::AnalysisDataBinAverageModule
- AnalysisDataFrameHeader()
: gmx::AnalysisDataFrameHeader
- AnalysisDataFrameRef()
: gmx::AnalysisDataFrameRef
- AnalysisDataHandle()
: gmx::AnalysisDataHandle
- AnalysisDataParallelOptions()
: gmx::AnalysisDataParallelOptions
- AnalysisDataPlotModule()
: gmx::AnalysisDataPlotModule
- AnalysisDataPlotSettings()
: gmx::AnalysisDataPlotSettings
- AnalysisDataPointSetRef()
: gmx::AnalysisDataPointSetRef
- AnalysisDataSimpleHistogramModule()
: gmx::AnalysisDataSimpleHistogramModule
- AnalysisDataStorage()
: gmx::AnalysisDataStorage
- AnalysisDataTestInput()
: gmx::test::AnalysisDataTestInput
- AnalysisDataValue()
: gmx::AnalysisDataValue
- AnalysisDataVectorPlotModule()
: gmx::AnalysisDataVectorPlotModule
- AnalysisDataWeightedHistogramModule()
: gmx::AnalysisDataWeightedHistogramModule
- AnalysisHistogramSettings()
: gmx::AnalysisHistogramSettings
- AnalysisHistogramSettingsInitializer()
: gmx::AnalysisHistogramSettingsInitializer
- AnalysisNeighborhood()
: gmx::AnalysisNeighborhood
- AnalysisNeighborhoodPair()
: gmx::AnalysisNeighborhoodPair
- AnalysisNeighborhoodPairSearch()
: gmx::AnalysisNeighborhoodPairSearch
- AnalysisNeighborhoodPositions()
: gmx::AnalysisNeighborhoodPositions
- AnalysisNeighborhoodSearch()
: gmx::AnalysisNeighborhoodSearch
- analyzeFrame()
: gmx::TrajectoryAnalysisModule
- APIError()
: gmx::APIError
- append()
: gmx::MessageStringCollector
, gmx::test::CommandLine
- appendLegend()
: gmx::AbstractPlotModule
- appendValue()
: gmx::OptionsAssigner
, gmx::AbstractOptionStorage
- applyModule()
: gmx::AbstractAnalysisData
, gmx::AnalysisDataModuleManager
- arg()
: gmx::test::CommandLine
- argc()
: gmx::test::CommandLine
- argv()
: gmx::test::CommandLine
- ArrayRef()
: gmx::ArrayRef< T >
- arrayRefFromArray()
: gmx::ArrayRef< T >
- arrayRefFromPointers()
: gmx::ArrayRef< T >
- arrayRefFromVector()
: gmx::ArrayRef< T >
- as_vec()
: gmx::BasicVector< ValueType >
- asAbsolute()
: gmx::test::FloatingPointDifference
- asUlps()
: gmx::test::FloatingPointDifference
- at()
: gmx::ArrayRef< T >
, gmx::ConstArrayRef< T >
- atomCount()
: gmx::SelectionPosition
, gmx::Selection
- atomIndices()
: gmx::Selection
, gmx::SelectionPosition
- average()
: gmx::AnalysisDataAverageModule
- averager()
: gmx::AnalysisDataWeightedHistogramModule
, gmx::AnalysisDataSimpleHistogramModule