Gromacs  2021
 All Classes Namespaces Files Functions Variables Typedefs Enumerations Enumerator Friends Macros Groups Pages
Class Index
A | B | C | D | E | F | G | H | I | K | L | M | N | O | P | Q | R | S | T | U | V | W | X
  A  
df_history_t   IMDOutputProvider (gmx)   nbnxn_ci_t   HelpWriterContext::Impl::SharedState (gmx)   
DifferentTasksTest (gmx::test::anonymous_namespace{mutex.cpp})   IMdpOptionProvider (gmx)   nbnxn_cj4_t   SignallerBuilder (gmx)   
AbstractAnalysisArrayData (gmx)   Grid::Dimensions (Nbnxm)   IMDSocket (gmx)   nbnxn_cj_t   SignalTest (gmx::test)   
AbstractAnalysisData (gmx)   DimParams (gmx)   IMessageWriter (gmx::anonymous_namespace{exceptions.cpp})   nbnxn_cycle_t   Simd4DBool (gmx)   
AbstractAverageHistogram (gmx)   DipoleData   Update::Impl   nbnxn_excl_t   Simd4Double (gmx)   
AbstractCompositeHelpTopic (gmx)   DirectoryEnumerator (gmx)   ResidueType::Impl   nbnxn_im_ei_t   Simd4FBool (gmx)   
AbstractOption (gmx)   AtomDistribution::DomainAtomGroups   VirtualSitesHandler::Impl (gmx)   nbnxn_sci   Simd4Float (gmx)   
AbstractOptionSection (gmx)   DomainDecompositionBuilder (gmx)   UpdateConstrainGpu::Impl (gmx)   NbnxnPairlistCpu   Simd4Test (gmx::test)   
AbstractOptionSectionHandle (gmx)   DomainDecompositionSpecialCasesTest (anonymous_namespace{domain_decomposition.cpp})   TrajectoryAnalysisSettings::Impl (gmx)   NbnxnPairlistCpuWork   SimdArrayRef (gmx::internal)   
AbstractOptionStorage (gmx)   DomainInfo (gmx)   TrajectoryAnalysisModuleData::Impl (gmx)   NBParamGpu   SimdBaseTest (gmx::test)   
AbstractPlotModule (gmx)   DomainLifetimeWorkload (gmx)   TrajectoryAnalysisModule::Impl (gmx)   NeighborSearchSignaller (gmx)   SimdDataTypes   
AbstractSimpleHelpTopic (gmx)   GridSet::DomainSetup (Nbnxm)   TextTableFormatter::Impl (gmx)   NelderMeadParameters (gmx::anonymous_namespace{neldermead.cpp})   SimdDBool (gmx)   
AbstractTrajectoryAnalysisModuleTestFixture (gmx::test)   DomDecHelper (gmx)   TextReader::Impl (gmx)   NelderMeadSimplex (gmx)   SimdDIBool (gmx)   
accessor_basic (gmx)   DomdecOptions (gmx)   TestReferenceChecker::Impl (gmx::test)   no_delete (gmx)   SimdDInt32 (gmx)   
AffineTransformation (gmx)   DoubleOption (gmx)   TestFileManager::Impl (gmx::test)   registerMdModuleNotification<>::NoCallParameter (gmx)   SimdDInt32Tag (gmx)   
KeyValueTreeTransformRuleBuilder::AfterFrom (gmx)   DoubleOptionInfo (gmx)   MockAnalysisDataModule::Impl (gmx::test)   NoContentsMatch (gmx::test)   SimdDouble (gmx)   
AlignedAllocationPolicy (gmx)   DoubleOptionStorage (gmx)   SelectionParserSymbolTable::Impl (gmx)   nonbonded_verlet_t   SimdDoubleTag (gmx)   
AlignedArray< double, N > (gmx)   
  E  
SelectionParserSymbolIterator::Impl (gmx)   NonbondedBenchmarkInfo (gmx)   SimdFBool (gmx)   
AlignedArray< float, N > (gmx)   SelectionParserSymbol::Impl (gmx)   NoOptionalOutput (gmx::test)   SimdFIBool (gmx)   
Allocator (gmx)   ekinstate_t   SelectionOptionManager::Impl (gmx)   NormalDistribution (gmx)   SimdFInt32 (gmx)   
AllocatorTest (gmx::test)   ElectricField (gmx::anonymous_namespace{electricfield.cpp})   SelectionCollection::Impl (gmx)   NormalModesTest (gmx::test::anonymous_namespace{normalmodes.cpp})   SimdFInt32Tag (gmx)   
AllVsiteBondedInteractions   ElectricFieldDimension (gmx::anonymous_namespace{electricfield.cpp})   RestraintManager::Impl (gmx)   not_null (gmx::compat)   SimdFloat (gmx)   
AnalysisArrayData (gmx)   StatePropagatorData::Element (gmx)   PositionCalculationCollection::Impl (gmx)   NoTextMatch (gmx::test)   SimdFloatingpointUtilTest (gmx::test::anonymous_namespace{simd_floatingpoint_util.cpp})   
AnalysisData (gmx)   FreeEnergyPerturbationData::Element (gmx)   PmePpCommGpu::Impl (gmx)   NotImplementedError (gmx)   SimdFloatTag (gmx)   
AnalysisDataAverageModule (gmx)   EnergyData::Element (gmx)   PmeForceSenderGpu::Impl (gmx)   HardwareTopology::Numa (gmx)   nbnxn_atomdata_t::SimdMasks   
AnalysisDataBinAverageModule (gmx)   ElementNotFoundError (gmx)   PmeCoordinateReceiverGpu::Impl (gmx)   HardwareTopology::NumaNode (gmx)   SimdSetZeroProxy (gmx)   
AnalysisDataDisplacementModule (gmx)   em_state   OptionsAssigner::Impl (gmx)   NumericalSplineTableInput (gmx)   SimdTest (gmx::test)   
AnalysisDataFrameAverageModule (gmx)   EnergyCalculationFrequencyErrors (gmx)   MrcDensityMapOfFloatWriter::Impl (gmx)   NumPmeDomains   SimdTraits (gmx::internal)   
AnalysisDataFrameAverager (gmx)   EnergyComparison (gmx::test)   MrcDensityMapOfFloatReader::Impl (gmx)   
  O  
SimpleHelpTopic (gmx)   
AnalysisDataFrameHeader (gmx)   EnergyData (gmx)   LocalAtomSetManager::Impl (gmx)   SimpleMdrunTest (gmx::test::anonymous_namespace{simple_mdrun.cpp})   
AnalysisDataFrameLocalData (gmx)   EnergyDriftTracker (gmx)   ImdSession::Impl (gmx)   ObservablesHistory   SimulationAlgorithmSetupError (gmx)   
AnalysisDataFrameLocalDataHandle (gmx)   EnergyEvaluator (anonymous_namespace{minimize.cpp})   HelpWriterContext::Impl (gmx)   ObsoleteToolModule (anonymous_namespace{legacymodules.cpp})   SimulationContext (gmx)   
AnalysisDataFrameLocalDataSetHandle (gmx)   EnergyFrame (gmx)   HelpManager::Impl (gmx)   omp_module_nthreads_t   SimulationGroups   
AnalysisDataFrameRef (gmx)   EnergyFrameReader (gmx::test)   HelpLinks::Impl (gmx)   OpenClTraits (gmx)   SimulationInputHandle (gmx)   
AnalysisDataHandle (gmx)   EnergyMinimizationTest (gmx::test::anonymous_namespace{minimize.cpp})   GpuHaloExchange::Impl (gmx)   OpenClTraits< cl_command_queue > (gmx)   SimulationInputHandleImplDeleter (gmx::detail)   
AnalysisDataHandleImpl (gmx::internal)   EnergyOutputTest (gmx::test::anonymous_namespace{energyoutput.cpp})   GpuBonded::Impl (gmx)   OpenClTraits< cl_context > (gmx)   SimulationInstabilityError (gmx)   
AnalysisDataLifetimeModule (gmx)   EnergyOutputTestParameters (gmx::test::anonymous_namespace{energyoutput.cpp})   GaussTransform3D::Impl (gmx)   OpenClTraits< cl_kernel > (gmx)   SimulationRunner (gmx::test)   
AnalysisDataModuleManager (gmx)   EnergySignaller (gmx)   FileNameOptionManager::Impl (gmx)   OpenClTraits< cl_program > (gmx)   SimulationSignal (gmx)   
AnalysisDataModuleParallel (gmx)   gmx_ga2la_t::Entry   DomainDecompositionBuilder::Impl (gmx)   OpenClTraitsBase (gmx)   SimulationSignaller (gmx)   
AnalysisDataModuleSerial (gmx)   EnumerationArray (gmx)   DeviceStreamManager::Impl (gmx)   OptimisationResult (gmx)   SimulationTimeStep (gmx)   
AnalysisDataParallelOptions (gmx)   EnumerationIterator (gmx)   DensityFittingForce::Impl (gmx)   OptionInfo (gmx)   SimulationWorkload (gmx)   
AnalysisDataPlotModule (gmx)   EnumerationWrapper (gmx)   CommandLineParser::Impl (gmx)   OptionManagerContainer (gmx)   SimulatorBuilder (gmx)   
AnalysisDataPlotSettings (gmx)   EnumIndexStore (gmx::internal)   CommandLineModuleManager::Impl (gmx)   Options (gmx)   SimulatorConfig (gmx)   
AnalysisDataPointSetRef (gmx)   EnumOption (gmx)   CommandLineHelpWriter::Impl (gmx)   OptionsAdapter (gmx::anonymous_namespace{pargs.cpp})   SimulatorEnv (gmx)   
AnalysisDataProxy (gmx)   EnumOptionInfo (gmx)   CommandLineHelpContext::Impl (gmx)   OptionsAssigner (gmx)   SimulatorStateData (gmx)   
AnalysisDataSimpleHistogramModule (gmx)   EnumOptionStorage (gmx)   AnalysisDataWeightedHistogramModule::Impl (gmx)   OptionsBehaviorCollection (gmx)   SingleRankChecker (anonymous_namespace{resourcedivision.cpp})   
AnalysisDataStorage (gmx)   ErrorMessage (gmx::anonymous_namespace{exceptions.cpp})   AnalysisDataSimpleHistogramModule::Impl (gmx)   OptionSection (gmx)   Site (gmx)   
AnalysisDataStorageFrame (gmx)   EwaldBoxZScaler   AnalysisDataModuleManager::Impl (gmx)   OptionSectionHandle (gmx)   HardwareTopology::Socket (gmx)   
AnalysisDataStorageFrameData (gmx::internal)   EwaldSurfaceTermTest (gmx::test::anonymous_namespace{ewaldsurfaceterm.cpp})   AnalysisDataLifetimeModule::Impl (gmx)   OptionSectionImpl (gmx::internal)   sort_along_vec_t   
AnalysisDataStorageImpl (gmx::internal)   ExactTextMatch (gmx::test)   AnalysisDataDisplacementModule::Impl (gmx)   OptionsFilter (gmx::anonymous_namespace{cmdlinehelpwriter.cpp})   spheresurfacebin   
AnalysisDataTestFixture (gmx::test)   ExceptionInfo (gmx)   AnalysisData::Impl (gmx)   OptionsImpl (gmx::internal)   SplineTableTest (gmx::test::anonymous_namespace{splinetable.cpp})   
AnalysisDataTestInput (gmx::test)   ExceptionInitializer (gmx)   AbstractCompositeHelpTopic::Impl (gmx)   OptionsIterator (gmx)   StandardInputStream (gmx)   
AnalysisDataTestInputFrame (gmx::test)   ExclusionBlock (gmx)   AbstractAnalysisData::Impl (gmx)   OptionsListFormatter (gmx::anonymous_namespace{cmdlinehelpwriter.cpp})   StartingBehaviorHandler (gmx::anonymous_namespace{handlerestart.cpp})   
AnalysisDataTestInputPointSet (gmx::test)   ExponentialDistribution (gmx)   AtomProperties::Impl   OptionsModifyingIterator (gmx)   StatePropagatorData (gmx)   
AnalysisDataValue (gmx)   ExponentialMovingAverage (gmx)   InconsistentInputError (gmx)   OptionsModifyingTypeVisitor (gmx)   StaticAverageHistogram (gmx::anonymous_namespace{histogram.cpp})   
AnalysisDataVectorPlotModule (gmx)   ExponentialMovingAverageState (gmx)   IndexBlockTest (anonymous_namespace{indexutil.cpp})   OptionsModifyingVisitor (gmx)   StaticDataFrameHeaderChecker (gmx::test::anonymous_namespace{mock_datamodule.cpp})   
AnalysisDataWeightedHistogramModule (gmx)   extents (gmx)   IndexFileWriterModule (gmx::analysismodules::anonymous_namespace{select.cpp})   OptionStorageTemplate (gmx)   StaticDataPointsChecker (gmx::test::anonymous_namespace{mock_datamodule.cpp})   
AnalysisHistogramSettings (gmx)   extents_analyse< 0 > (gmx::detail)   IndexGroupsAndNames (gmx)   OptionStorageTemplateSimple (gmx)   StaticDataPointsStorageChecker (gmx::test::anonymous_namespace{mock_datamodule.cpp})   
AnalysisHistogramSettingsInitializer (gmx)   extents_analyse< R, dynamic_extent, StaticExtents...> (gmx::detail)   INeighborSearchSignallerClient (gmx)   OptionsTypeVisitor (gmx)   StaticLog2 (gmx)   
AnalysisNeighborhood (gmx)   extents_analyse< R, E0, StaticExtents...> (gmx::detail)   InitialConstraintsTest (gmx::test::anonymous_namespace{initialconstraints.cpp})   OptionsVisitor (gmx)   StaticLog2< 0 > (gmx)   
AnalysisNeighborhoodPair (gmx)   ExtractClusterModuleTest (gmx::test::anonymous_namespace{extract_cluster.cpp})   InstallationPrefixInfo (gmx)   OptionTemplate (gmx)   StaticLog2< 1 > (gmx)   
AnalysisNeighborhoodPairSearch (gmx)   
  F  
Int64Option (gmx)   OptionValueConverterSimple (gmx)   StdioTestHelper (gmx::test)   
AnalysisNeighborhoodPositions (gmx)   Int64OptionInfo (gmx)   OptionValueStoreNull (gmx)   StepWorkload (gmx)   
AnalysisNeighborhoodSearch (gmx)   f_thread_t   Int64OptionStorage (gmx)   OuterProductEvaluator (gmx)   StopConditionSignal (gmx)   
AnalysisTemplate   DimParams::FepDimParams (gmx)   IntegerBox (gmx)   OutputAdapterContainer (gmx)   StopConditionTime (gmx)   
AnalyticalSplineTableInput (gmx)   FileIOError (gmx)   IntegerOption (gmx)   OutputFile   StopHandler (gmx)   
AnglePositionIterator (gmx::analysismodules::anonymous_namespace{angle.cpp})   FileIOXdrSerializer (gmx)   IntegerOptionInfo (gmx)   OutputQuantities (gmx::test::anonymous_namespace{bonded.cpp})   StopHandlerBuilder (gmx)   
Any (gmx)   FileNameOption (gmx)   IntegerOptionStorage (gmx)   OutputRequirementOptionDirector (gmx)   StringCompare (gmx)   
AnyOutputSupportedFiles (gmx::test)   FileNameOptionInfo (gmx)   gpu_timers_t::Interaction (Nbnxm)   OutputRequirements (gmx)   StringFormatter (gmx)   
ApicIdLayout (gmx::anonymous_namespace{cpuinfo.cpp})   FileNameOptionManager (gmx)   InteractionListHandle   OutputSelector (gmx)   StringInputStream (gmx)   
APIError (gmx)   FileNameOptionStorage (gmx)   InteractionOfType   OutputSelectorDeathTest (gmx::test)   StringKeywordMatchItem (anonymous_namespace{sm_keywords.cpp})   
ArrayRef (gmx)   FileTypeHandler (gmx::anonymous_namespace{filenameoption.cpp})   InteractionsOfType   
  P  
StringOption (gmx)   
ArrayRefWithPadding (gmx)   FileTypeMapping (gmx::anonymous_namespace{filenameoption.cpp})   InteractiveMD (gmx)   StringOptionInfo (gmx)   
Atom2VsiteBond   FilteringExactTextMatch (gmx::test)   InteractiveMolecularDynamics (gmx)   PaddedVector (gmx)   StringOptionStorage (gmx)   
AtomAndPmeOrderSizedData (gmx::test::anonymous_namespace{pmegathertest.cpp})   FixedCapacityVector (gmx)   InteractiveTestHelper (gmx::test)   PaddedVectorTest (gmx::test)   StringOutputStream (gmx)   
AtomDistribution   FlagsTemplate (gmx)   InterdependentTask (gmx)   PaddingTraits (gmx::detail)   StringTable   
AtomIndex (gmx)   FlagTest (gmx::test)   InternalError (gmx)   PageAlignedAllocationPolicy (gmx)   StringTableBuilder   
AtomIndexExtremes (gmx)   FloatingPointDifference (gmx::test)   InvalidInputError (gmx)   PairDistance (gmx::analysismodules::anonymous_namespace{pairdist.cpp})   StringTableEntry   
AtomIterator   FloatingPointTolerance (gmx::test)   IonSwapping (gmx)   PairDistanceModuleData (gmx::analysismodules::anonymous_namespace{pairdist.cpp})   StringTestBase (gmx::test)   
AtomPair (gmx)   FloatOption (gmx)   IOptionManager (gmx)   PairlistParams   SurfaceAreaCalculator (gmx)   
AtomProperties   FloatOptionInfo (gmx)   IOptionsBehavior (gmx)   PairlistSet   swap_compartment   
AtomProperty   FloatOptionStorage (gmx)   IOptionsContainer (gmx)   PairlistSets   swap_group   
AtomProxy   FloatTypeMatcher (gmx::test)   IOptionsContainerWithSections (gmx)   PairSearch   SwapCoordinates (gmx)   
AtomRange   ForceBuffers (gmx)   IOptionSectionStorage (gmx)   PairsearchWork   SynopsisFormatter (gmx::anonymous_namespace{cmdlinehelpwriter.cpp})   
AtomSizedData (gmx::test::anonymous_namespace{pmegathertest.cpp})   ForceBuffersView (gmx)   IOptionsFormatter (gmx::anonymous_namespace{cmdlinehelpwriter.cpp})   ParallelConsistencyError (gmx)   
  T  
Awh (gmx)   ForceElement (gmx)   IOptionValueStore (gmx)   UniformRealDistribution::param_type (gmx)   
AwhEnergyBlock (gmx)   ForceHelperBuffers   IOutputAdapter (gmx)   UniformIntDistribution::param_type (gmx)   t_bb   
AwhFepLambdaStateTestParameters (gmx::test)   ForceOutputs (gmx)   IProgramContext (gmx)   TabulatedNormalDistribution::param_type (gmx)   t_compare_value   
AwhReader   ForceProviderInput (gmx)   IRestraintPotential (gmx)   NormalDistribution::param_type (gmx)   t_compiler_data   
AwhTestParameters (gmx::test)   ForceProviderOutput (gmx)   ISerializer (gmx)   GammaDistribution::param_type (gmx)   t_conect (gmx::analysismodules::anonymous_namespace{sasa.cpp})   
  B  
ForceProviders (gmx)   ISignaller (gmx)   ExponentialDistribution::param_type (gmx)   t_coordselection   
ForceWithShiftForces (gmx)   ISimulator (gmx)   ParameterizedMdrunTestFixture (gmx::test)   t_edflood (anonymous_namespace{edsam.cpp})   
BalanceRegion   ForceWithVirial (gmx)   ISimulatorElement (gmx)   nbnxn_atomdata_t::Params   t_edvecs (anonymous_namespace{edsam.cpp})   
KeyValueTreeTransformRuleBuilder::Base (gmx)   ForeignLambdaTerms   isIntegralConstant (gmx)   ParrinelloRahmanBarostat (gmx)   t_eigvec (anonymous_namespace{edsam.cpp})   
BaseEntry   FramePairManager (gmx::test)   IsSerializableEnum (gmx)   PartialDeserializedTprFile   t_filenm   
basic_mdspan (gmx)   FreeEnergyParameterTest (gmx::test::anonymous_namespace{freeenergyparameters.cpp})   IsSerializableType (gmx)   partition   t_mapping   
BasicAverageHistogramModule (gmx::internal)   FreeEnergyParameterTestParameters (gmx::test::anonymous_namespace{freeenergyparameters.cpp})   IsVectorOfSerializableType (gmx::test::anonymous_namespace{checkpointdata.cpp})   PbcAiuc   t_matrix   
BasicHistogramImpl (gmx::internal)   FreeEnergyPerturbationData (gmx)   ITemperatureCouplingImpl (gmx)   PeriodicActionsTest (gmx::test::anonymous_namespace{periodicactions.cpp})   t_mdatoms   
BasicVector (gmx)   FreeVolume (gmx::analysismodules::anonymous_namespace{freevolume.cpp})   TestValues::TestValueGenerator::Iterator (gmx::test::anonymous_namespace{checkpointdata.cpp})   PhysicalNodeCommunicator (gmx)   t_methoddata_compare   
BenchmarkSystem (gmx)   functor_wrapper (gmx)   Range::iterator (gmx)   pme_setup_t   t_methoddata_distance   
BerendsenTemperatureCoupling (gmx)   
  G  
ITextBlockMatcher (gmx::test)   PmeBSplineModuliTest (gmx::test::anonymous_namespace{pmebsplinetest.cpp})   t_methoddata_kweval   
Bias (gmx)   ITextBlockMatcherSettings (gmx::test)   PmeForceSenderGpu (gmx)   t_methoddata_kwint   
BiasCoupledToSystem (gmx)   GammaDistribution (gmx)   ITopologyHolderClient (gmx)   PmeGatherTest (gmx::test::anonymous_namespace{pmegathertest.cpp})   t_methoddata_kwreal   
BiasFepLambdaStateTest (gmx::test)   GaussianOn1DLattice (gmx)   ITopologyProvider (gmx)   PmeGpu   t_methoddata_kwstr (anonymous_namespace{sm_keywords.cpp})   
BiasGrid (gmx)   GaussianSpreadKernelParameters (gmx)   ITrajectorySignallerClient (gmx)   PmeGpuAtomParams   t_methoddata_pos   
BiasOutputSetup   GaussTransform3D (gmx)   ITrajectoryWriterClient (gmx)   PmeGpuConstParams   t_methoddata_same   
BiasParams (gmx)   Grid::Geometry (Nbnxm)   IWrapper (gmx::anonymous_namespace{helpwritercontext.cpp})   PmeGpuDynamicParams   t_nbparam   
BiasState (gmx)   GlobalCommandLineHelpContext (gmx)   
  K  
PmeGpuGridParams   t_pargs   
BiasStateTest (gmx::test)   GlobalCommunicationHelper (gmx)   PmeGpuKernelParamsBase   t_partition_item   
BiasTest (gmx::test)   gmx_ana_index_t   KernelBenchOptions (Nbnxm)   PmeGpuProgram   t_pbc   
BiasWriter (gmx)   gmx_ana_indexgrps_t   KernelLaunchConfig   PmeGpuProgramImpl   t_pullcoord   
BinaryInformationSettings (gmx)   gmx_ana_indexmap_t   KeyValueTreeBuilder (gmx)   PmeGpuSettings   t_register_method   
bonded_threading_t   gmx_ana_pos_t   KeyValueTreeObjectArrayBuilder (gmx)   PmeGpuSpecific   t_state   
BondedInteraction   gmx_ana_poscalc_t   KeyValueTreeObjectBuilder (gmx)   PmeGpuStaging   t_swap   
BondedInteractionList   gmx_ana_selcollection_t   KeyValueTreePath (gmx)   PmeLoadBalanceHelper (gmx)   t_symbuf   
BondedInteractionsTest (gmx::test)   gmx_ana_selmethod_help_t   KeyValueTreeTransformRuleBuilder (gmx)   PmePpCommGpu (gmx)   t_UmbrellaHeader   
BooleanOption (gmx)   gmx_ana_selmethod_t   KeyValueTreeTransformRulesScoped (gmx)   PmeShared   t_UmbrellaWindow   
BooleanOptionInfo (gmx)   gmx_ana_selparam_t   KeyValueTreeUniformArrayBuilder (gmx)   PmeSolveTest (gmx::test::anonymous_namespace{pmesolvetest.cpp})   t_xpmelmt   
BooleanOptionStorage (gmx)   gmx_ana_selvalue_t   KeyValueTreeValueBuilder (gmx)   PmeSplineAndSpreadTest (gmx::test::anonymous_namespace{pmesplinespreadtest.cpp})   TabulatedNormalDistribution (gmx)   
BoundingBox (Nbnxm)   gmx_cache_protect_t   KeywordDetailsHelpTopic (gmx::anonymous_namespace{selhelp.cpp})   PmeTest (gmx::test::anonymous_namespace{pmetest.cpp})   Task (gmx)   
BoundingBox1D (Nbnxm)   gmx_device_runtime_data_t   KeywordsHelpTopic (gmx::anonymous_namespace{selhelp.cpp})   PointState (gmx)   TemperatureCouplingData (gmx)   
BoxDeformationHandle (gmx)   gmx_domdec_constraints_t   
  L  
GaussianSpreadKernelParameters::PositionAndAmplitude (gmx)   TerminationHelper (gmx::test)   
TopologyHolder::Builder (gmx)   gmx_domdec_specat_comm_t   PositionCalculationCollection (gmx)   TestDevice (gmx::test)   
  C  
gmx_enerdata_t   LastStepSignaller (gmx)   PotentialPointData (gmx)   TestException (gmx::test)   
gmx_enfrot   layout_right (gmx)   PpRanks   TestFileInputRedirector (gmx::test)   
HardwareTopology::Cache (gmx)   gmx_enfrotgrp   LeapFrogTest (gmx::test::anonymous_namespace{leapfrog.cpp})   PreprocessingAtomTypes   TestFileManager (gmx::test)   
CalculateAcceptanceWeightSimple (gmx::test::anonymous_namespace{expanded.cpp})   gmx_ffparams_t   LeapFrogTestParameters (gmx::test::anonymous_namespace{leapfrog.cpp})   PreprocessingBondAtomType   TestFileOutputRedirector (gmx::test)   
ChainIdFiller   gmx_fft_fftpack   LegacyEnumOption (gmx)   PreprocessResidue   TestHardwareEnvironment (gmx::test)   
CheckpointData (gmx)   gmx_fft_fftw3   LegacyInput (gmx)   PrivateImplPointer (gmx)   TestOptionsProvider (gmx::test)   
CheckpointDataTest (gmx::test::anonymous_namespace{checkpointdata.cpp})   gmx_fft_mkl   LegacyMdrunOptions (gmx)   Profiling (gmx)   TestOptionsRegistry (gmx::test::anonymous_namespace{testoptions.cpp})   
CheckpointError (gmx)   gmx_ga2la_t   LegacySimulator (gmx)   Propagator (gmx)   TestProgramContext (gmx::test::anonymous_namespace{testinit.cpp})   
CheckpointHandler (gmx)   gmx_help_make_index_group   LegacySimulatorData (gmx)   PropagatorBarostatConnection (gmx)   TestReferenceChecker (gmx::test)   
CheckpointHeaderContents   gmx_hw_opt_t   Lincs (gmx)   PropagatorThermostatConnection (gmx)   TestReferenceData (gmx::test)   
CheckpointHelper (gmx)   gmx_kernel_timing_data_t   LincsDeviations (gmx)   PTCouplingArrays (gmx)   TestReferenceDataImpl (gmx::test::internal)   
CheckpointHelperBuilder (gmx)   gmx_localtop_t   ListedForces   pull_group_work_t   TestValues::TestValueGenerator (gmx::test::anonymous_namespace{checkpointdata.cpp})   
CheckpointOptions (gmx)   gmx_molblock_t   ListOfLists (gmx)   DimParams::PullDimParams (gmx)   TestValues (gmx::test::anonymous_namespace{checkpointdata.cpp})   
cl_atomdata   gmx_moltype_t   LocalAtomSet (gmx)   
  Q  
TextFileMatch (gmx::test)   
cl_nbparam_params   gmx_multisim_t   LocalAtomSetManager (gmx)   TextInputFile (gmx)   
ClfftInitializer (gmx)   gmx_pme_comm_n_box_t   LogEntryWriter (gmx)   QuadraticSplineTable (gmx)   TextInputStream (gmx)   
ClHandle (gmx)   gmx_pme_comm_vir_ene_t   LoggerBuilder (gmx)   
  R  
TextLineWrapper (gmx)   
CMainCommandLineModule (gmx::anonymous_namespace{cmdlinemodulemanager.cpp})   gmx_pme_pp   LoggerOwner (gmx)   TextLineWrapperSettings (gmx)   
TextTableFormatter::Impl::ColumnData (gmx)   gmx_potfit   LoggerTestHelper (gmx::test)   Range (gmx)   TextOutputFile (gmx)   
COMInPlaceTest (gmx::test::anonymous_namespace{com.cpp})   gmx_repl_ex   LoggingSignaller (gmx)   RangeError (gmx)   TextOutputStream (gmx)   
CommandLine (gmx::test)   gmx_reverse_top_t   HardwareTopology::LogicalProcessor (gmx)   RangePartitioning (gmx)   TextReader (gmx)   
CommandLineCommonOptionsHolder (gmx)   gmx_sel_evaluate_t   CpuInfo::LogicalProcessor (gmx)   Rdf (gmx::analysismodules::anonymous_namespace{rdf.cpp})   TextReaderTest (gmx::test::anonymous_namespace{textreader.cpp})   
CommandLineHelpContext (gmx)   gmx_sel_lexer_t   LogLevelHelper (gmx)   RdfModuleData (gmx::analysismodules::anonymous_namespace{rdf.cpp})   TextReaderTestParams (gmx::test::anonymous_namespace{textreader.cpp})   
CommandLineHelpModule (gmx)   gmx_sel_mempool_block_t   LogWriteHelper (gmx)   ReadCheckpointDataHolder (gmx)   TextTableFormatter (gmx)   
CommandLineHelpWriter (gmx)   gmx_sel_mempool_t   
  M  
RealFunctionvalueAtCoordinate (gmx)   TextWriter (gmx)   
CommandLineModuleGroup (gmx)   gmx_slabdata   ReferenceFileNames (gmx::test::anonymous_namespace{periodicactions.cpp})   thread_work_t   
CommandLineModuleGroupData (gmx)   gmx_sparsematrix   HardwareTopology::Machine (gmx)   registerMdModuleNotification (gmx)   ThreadingInfo (gmx)   
CommandLineModuleManager (gmx)   gmx_specatsend_t   ManualOutputFile (gmx::test::anonymous_namespace{extract_cluster.cpp})   registerMdModuleNotification< CurrentCallParameter, CallParameter...> (gmx)   ThreeFry2x64 (gmx)   
CommandLineModuleManagerTestBase (gmx::test)   gmx_tng_trajectory   MappedUnionFinder (gmx)   registerMdModuleNotification<> (gmx)   ThreeFry2x64Fast (gmx)   
CommandLineModuleSettings (gmx)   gmx_wallclock_gpu_nbnxn_t   layout_right::mapping (gmx)   RepeatingOptionSection (gmx)   ThreeFry2x64General (gmx)   
CommandLineParser (gmx)   gmx_wallclock_gpu_pme_t   MaxNumFrames (gmx::test)   RepeatingOptionSectionHandle (gmx)   ThrowLocation (gmx)   
CommandLineProgramContext (gmx)   gmx_walltime_accounting   MD5Checksum   RepeatingOptionSectionStorage (gmx)   TimeOptionScaler (gmx::anonymous_namespace{timeunitmanager.cpp})   
CommandLineTestBase (gmx::test)   gpu_plist (Nbnxm)   MDAtoms (gmx)   ReplicaExchangeParameters   TimeUnitBehavior (gmx)   
CommandLineTestHelper (gmx::test)   gpu_timers_t (Nbnxm)   MDLogger (gmx)   SelectionOptionManager::Impl::RequestsClearer (gmx)   TimeUnitManager (gmx)   
CommandsHelpTopic (gmx::anonymous_namespace{cmdlinehelpmodule.cpp})   GpuForceReduction (gmx)   MdModuleNotification (gmx)   ResetHandler (gmx)   TimingOptions (gmx)   
SimdMathTest::CompareSettings (gmx::test)   GpuHaloExchange (gmx)   MDModules (gmx)   ResidueTypeEntry   ToleranceError (gmx)   
CompositeHelpTopic (gmx)   GpuParallel3dFft   MdModulesCheckpointReadingBroadcast (gmx)   RestraintForceProvider (gmx)   KeyValueTreeTransformRuleBuilder::ToObject (gmx)   
CompositeSimulatorElement (gmx)   GpuRegionTimerImpl   MdModulesCheckpointReadingDataOnMaster (gmx)   RestraintManager (gmx)   TopologyData (gmx)   
ComputeGlobalsElement (gmx)   GpuRegionTimerWrapper   MdModulesEnergyOutputToDensityFittingRequestChecker (gmx)   RestraintMDModule (gmx)   TopologyHolder (gmx)   
ConfMatch (gmx::test)   GpuTaskAssignments (gmx)   MdModulesNotifier (gmx)   RestraintMDModuleImpl (gmx)   TopologyInformation (gmx)   
Constraints (gmx)   GpuTaskAssignmentsBuilder (gmx)   MdModulesWriteCheckpointData (gmx)   RootHelpTopic (gmx::anonymous_namespace{cmdlinehelpmodule.cpp})   TopologyManager (gmx::test)   
ConstraintsElement (gmx)   GpuTaskMapping (gmx)   MdrunCompressedXOutputTest (anonymous_namespace{compressed_x_output.cpp})   RstParagraphIterator (gmx)   KeyValueTreeTransformRuleBuilder::ToValue (gmx)   
ConstraintsParam (gmx)   Grid (Nbnxm)   Mdrunner (gmx)   RVecMatcher (gmx::test)   TpiTest (gmx::test::anonymous_namespace{tpitest.cpp})   
ConstraintsTest (gmx::test::anonymous_namespace{constr.cpp})   GridAxis (gmx)   MdrunnerBuilder (gmx)   
  S  
TprAndFileManager (gmx::test)   
ContinuationFramePairManager (gmx::test::anonymous_namespace{exactcontinuation.cpp})   GridPoint (gmx)   MdrunNoAppendContinuationIsExact (gmx::test::anonymous_namespace{exactcontinuation.cpp})   TpxFileHeader   
ConvertTprInfo (gmx)   GridSet (Nbnxm)   MdrunOptions (gmx)   Sasa (gmx::analysismodules::anonymous_namespace{sasa.cpp})   TrajectoryAnalysisCommandLineRunner (gmx)   
CorrelationBlockData::CoordData (gmx)   GridSetData (Nbnxm)   MdrunRerunTest (gmx::test::anonymous_namespace{rerun.cpp})   SasaModuleData (gmx::analysismodules::anonymous_namespace{sasa.cpp})   TrajectoryAnalysisModule (gmx)   
CoordState (gmx)   GridWork (Nbnxm)   MdrunTestFixture (gmx::test)   ScalarDataTypes   TrajectoryAnalysisModuleData (gmx)   
HardwareTopology::Core (gmx)   GromacsException (gmx)   MdrunTestFixtureBase (gmx::test)   SearchCycleCounting   TrajectoryAnalysisModuleDataBasic (gmx::anonymous_namespace{analysismodule.cpp})   
BoundingBox::Corner (Nbnxm)   GromppTest (anonymous_namespace{grompp.cpp})   MembedHolder (gmx)   Selection (gmx)   TrajectoryAnalysisModuleTestFixture (gmx::test)   
DispersionCorrection::Correction   OptionSectionImpl::Group (gmx::internal)   MempoolGroupReserver (anonymous_namespace{evaluate.cpp})   SelectionCollection (gmx)   TrajectoryAnalysisRunnerCommon (gmx)   
CorrelationBlockData (gmx)   
  H  
MempoolSelelemReserver (anonymous_namespace{evaluate.cpp})   SelectionData (gmx::internal)   TrajectoryAnalysisSettings (gmx)   
CorrelationGrid (gmx)   MessageStringCollector (gmx)   SelectionEvaluator (gmx)   TrajectoryComparison (gmx::test)   
CorrelationTensor (gmx)   HardwareTopology (gmx)   MessageStringContext (gmx)   SelectionFileOption (gmx)   TrajectoryElement (gmx)   
CpuInfo (gmx)   HashedMap (gmx)   MessageWriterFileNoThrow (gmx::anonymous_namespace{exceptions.cpp})   SelectionFileOptionInfo (gmx)   TrajectoryElementBuilder (gmx)   
Constraints::CreationHelper (gmx)   HelpExportCompletion (gmx::anonymous_namespace{cmdlinehelpmodule.cpp})   MessageWriterString (gmx::anonymous_namespace{exceptions.cpp})   SelectionFileOptionStorage (gmx)   TrajectoryFileOpener (gmx)   
CrossCorrelationEvaluationHelperValues (gmx::anonymous_namespace{densityfit.cpp})   HelpExportReStructuredText (gmx::anonymous_namespace{cmdlinehelpmodule.cpp})   MessageWriterTextWriter (gmx::anonymous_namespace{exceptions.cpp})   SelectionLocation (gmx)   TrajectoryFrame (gmx)   
CrossCorrelationGradientAtVoxel (gmx::anonymous_namespace{densityfit.cpp})   HelpLinks (gmx)   methoddata_insolidangle   SelectionOption (gmx)   TrajectoryFrameMatchSettings (gmx::test)   
CrystallographicLabels (gmx)   HelpManager (gmx)   methoddata_merge   SelectionOptionBehavior (gmx)   TrajectoryFrameReader (gmx::test)   
cu_atomdata   HelpWriterContext (gmx)   methoddata_permute   SelectionOptionInfo (gmx)   TrajectoryFrameWriter (gmx)   
CubicSplineTable (gmx)   HistogramSize (gmx)   MimicCommunicator (gmx)   SelectionOptionManager (gmx)   TrajectoryFrameWriterTest (gmx::test)   
  D  
history_t   MimicTest (gmx::test)   SelectionOptionStorage (gmx)   TrajectorySignaller (gmx)   
HostAllocationPolicy (gmx)   MindistAction (gmx::anonymous_namespace{nbsearch.cpp})   SelectionParserParameter (gmx)   TrajectoryTolerances (gmx::test)   
DataFileFinder (gmx)   HostAllocatorTest (gmx::test)   MissingElementConnectionError (gmx)   SelectionParserSymbol (gmx)   TranslateAndScale (gmx)   
DataFileInfo (gmx)   HostAllocatorTestNoMem (gmx::test)   MockAverageHistogram (anonymous_namespace{histogram.cpp})   SelectionParserSymbolIterator (gmx)   
  U  
DataFileOptions (gmx)   HostAllocatorTestNoMemCopyable (gmx::test)   MockModule (gmx::test)   SelectionParserSymbolTable (gmx)   
DataStorageRequester (gmx::test::anonymous_namespace{mock_datamodule.cpp})   HostInteractionList (gmx)   MockOption (anonymous_namespace{abstractoptionstorage.cpp})   SelectionParserValue (gmx)   UmbrellaOptions   
dd_corners_t   HostMemoryTest (gmx::test)   MockOptionsModule (gmx::test)   SelectionPosition (gmx)   UniformIntDistribution (gmx)   
DDBalanceRegionHandler   HardwareTopology::HWThread (gmx)   MockOptionStorage (anonymous_namespace{abstractoptionstorage.cpp})   SelectionOptionManager::Impl::SelectionRequest (gmx)   UniformRealDistribution (gmx)   
DDGridSetup   
  I  
ModularSimulator (gmx)   SelectionTopologyProperties (gmx)   UnionFinder (gmx)   
DDPairInteractionRanges   ModularSimulatorAlgorithm (gmx)   SelectionTreeElement (gmx)   UnitCellInfo   
DefaultExecutableEnvironment (gmx::anonymous_namespace{cmdlineprogramcontext.cpp})   IAnalysisDataModule (gmx)   ModularSimulatorAlgorithmBuilder (gmx)   SelelemTemporaryValueAssigner (anonymous_namespace{evaluate.cpp})   Update (gmx)   
DefaultInitializationAllocator (gmx)   ICheckpointHelperClient (gmx)   ModularSimulatorAlgorithmBuilderHelper (gmx)   SelMethodEvalContext (gmx)   UpdateGroupsCog (gmx)   
DefaultInputRedirector (gmx::anonymous_namespace{fileredirector.cpp})   NbnxnPairlistCpuWork::IClusterData   ModularSimulatorError (gmx)   SetAtoms (gmx)   UserInputError (gmx)   
DefaultOutputRedirector (gmx::anonymous_namespace{fileredirector.cpp})   ICommandLineModule (gmx)   ModuleHelpTopic (gmx::anonymous_namespace{cmdlinehelpmodule.cpp})   SetAtomsSupportedFiles (gmx::test)   
  V  
DefaultProgramContext (gmx::anonymous_namespace{programcontext.cpp})   ICommandLineOptionsModule (gmx)   AnalysisDataModuleManager::Impl::ModuleInfo (gmx)   SetAtomsTest (gmx::test)   
DensityFitting (gmx::anonymous_namespace{densityfitting.cpp})   ICommandLineOptionsModuleSettings (gmx)   ModuleSelection (gmx::test)   SetAtomsUnSupportedFiles (gmx::test)   VelocityScalingTemperatureCoupling (gmx)   
DensityFittingAmplitudeLookup (gmx)   IdentityFormatter (gmx)   ModuleTest (gmx::test)   SetBothTimeTest (gmx::test)   VirtualSiteTopology::VirtualSiteAngle   
DensityFittingForce (gmx)   IEnergySignallerClient (gmx)   MoleculeBlockIndices   SetBox (gmx)   VirtualSiteTopology::VirtualSiteBond   
DensityFittingForceProvider (gmx)   IExceptionInfo (gmx::internal)   MoleculeInformation   SetForces (gmx)   VirtualSiteConfiguration   
DensityFittingForceProviderState (gmx)   IExecutableEnvironment (gmx)   MoleculePatch   SetForceSupportedFiles (gmx::test)   VirtualSitesHandler (gmx)   
DensityFittingModuleInfo (gmx)   IFileInputRedirector (gmx)   MoleculePatchDatabase   SetForceUnSupportedFiles (gmx::test)   VirtualSiteTopology   
DensityFittingOptions (gmx)   IFileMatcher (gmx::test)   MoleculeType   SetPrecision (gmx)   VRescaleTemperatureCoupling (gmx)   
DensityFittingOutputProvider (gmx)   IFileMatcherSettings (gmx::test)   MrcDataStatistics (gmx)   SetPrecisionSupportedFiles (gmx::test)   VsiteAtomMapping   
DensityFittingParameters (gmx)   IFileOutputRedirector (gmx)   MrcDensityMapHeader (gmx)   SetPrecisionUnSupportedFiles (gmx::test)   VsiteBondedInteraction   
DensityFittingSimulationParameterSetup (gmx::anonymous_namespace{densityfitting.cpp})   IForceProvider (gmx)   MrcDensityMapOfFloatFromFileReader (gmx)   SetStartTime (gmx)   VsiteBondParameter   
DensityFittingTest (gmx::test)   IHelpExport (gmx::anonymous_namespace{cmdlinehelpmodule.cpp})   MrcDensityMapOfFloatReader (gmx)   SetStartTimeTest (gmx::test)   VsiteThread (gmx)   
DensitySimilarityCrossCorrelation (gmx::anonymous_namespace{densityfit.cpp})   IHelpTopic (gmx)   MrcDensityMapOfFloatWriter (gmx)   SetTimeStep (gmx)   
  W  
DensitySimilarityInnerProduct (gmx::anonymous_namespace{densityfit.cpp})   IKeyValueTreeTransformRules (gmx)   MrcDensitySkewData (gmx)   SetTimeStepTest (gmx::test)   
DensitySimilarityMeasure (gmx)   ILastStepSignallerClient (gmx)   MtsLevel (gmx)   SettleData (gmx)   WholeMoleculeTransform (gmx)   
DensitySimilarityRelativeEntropy (gmx::anonymous_namespace{densityfit.cpp})   ilist_data_t   MultiDimArray (gmx)   SettleTest (gmx::test::anonymous_namespace{settle.cpp})   WorkDivision   
DevelopmentFeatureFlags (gmx)   iListInput (gmx::test::anonymous_namespace{bonded.cpp})   MultiSimTest (gmx::test)   SettleTestParameters (gmx::test::anonymous_namespace{settle.cpp})   WrapperToString (gmx::anonymous_namespace{helpwritercontext.cpp})   
HardwareTopology::Device (gmx)   ILoggingSignallerClient (gmx)   
  N  
SetVelocities (gmx)   WrapperToVector (gmx::anonymous_namespace{helpwritercontext.cpp})   
DeviceDetectionResult (gmx)   ILogTarget (gmx)   SetVelocitySupportedFiles (gmx::test)   WriteCheckpointDataHolder (gmx)   
DeviceInformation   IMDEnergyBlock (gmx)   nb_staging_t   SetVelocityUnSupportedFiles (gmx::test)   
  X  
DeviceStream   IMDHeader (gmx)   NbnxmGpu   shakedata (gmx)   
DeviceStreamManager (gmx)   IMDModule (gmx)   nbnxn_atomdata_output_t   ShakeTest (gmx::anonymous_namespace{shake.cpp})   gpu_timers_t::XFTransfers (Nbnxm)   
DeviceStreamManagerTest (gmx::test::anonymous_namespace{device_stream_manager.cpp})   ImdOptions (gmx)   nbnxn_atomdata_t   GaussianSpreadKernelParameters::Shape (gmx)   XvgMatch (gmx::test)   
A | B | C | D | E | F | G | H | I | K | L | M | N | O | P | Q | R | S | T | U | V | W | X