|
| ekinstate_t | TrajectoryAnalysisModuleData::Impl (gmx) | nbnxn_cj_packed_t (gmx) | SetTimeStepTest (gmx::test) |
| ElectricField (gmx::anonymous_namespace{electricfield.cpp}) | TrajectoryAnalysisModule::Impl (gmx) | nbnxn_cj_t (gmx) | SettleData (gmx) |
| AbstractAnalysisArrayData (gmx) | ElectricFieldDimension (gmx::anonymous_namespace{electricfield.cpp}) | TextTableFormatter::Impl (gmx) | nbnxn_cycle_t (gmx) | SettleGpu (gmx) |
| AbstractAnalysisData (gmx) | ElectricFieldModuleInfo (gmx) | TextReader::Impl (gmx) | nbnxn_excl_t (gmx) | SettleTest (gmx::test::anonymous_namespace{settle.cpp}) |
| AbstractAverageHistogram (gmx) | StatePropagatorData::Element (gmx) | TestReferenceChecker::Impl (gmx::test) | nbnxn_im_ei_t (gmx) | SettleTestParameters (gmx::test::anonymous_namespace{settle.cpp}) |
| AbstractCompositeHelpTopic (gmx) | FreeEnergyPerturbationData::Element (gmx) | TestFileManager::Impl (gmx::test) | nbnxn_sci_t (gmx) | SettleWaterTopology |
| AbstractOption (gmx) | EnergyData::Element (gmx) | MockAnalysisDataModule::Impl (gmx::test) | NbnxnPairlistCpu (gmx) | SetVelocities (gmx) |
| AbstractOptionSection (gmx) | ElementNotFoundError (gmx) | SelectionParserSymbolTable::Impl (gmx) | NBParamGpu (gmx) | SetVelocitySupportedFiles (gmx::test) |
| AbstractOptionSectionHandle (gmx) | em_state | SelectionParserSymbolIterator::Impl (gmx) | NBStagingData (gmx) | SetVelocityUnSupportedFiles (gmx::test) |
| AbstractOptionStorage (gmx) | EnergyAccumulator (gmx) | SelectionParserSymbol::Impl (gmx) | NeighborSearchSignaller (gmx) | shakedata (gmx) |
| AbstractPlotModule (gmx) | EnergyAccumulator< false, true > (gmx) | SelectionOptionManager::Impl (gmx) | NelderMeadParameters (gmx::anonymous_namespace{neldermead.cpp}) | ShakeTest (gmx::test::anonymous_namespace{shake.cpp}) |
| AbstractSimpleHelpTopic (gmx) | EnergyAccumulator< true, true > (gmx) | SelectionCollection::Impl (gmx) | NelderMeadSimplex (gmx) | GaussianSpreadKernelParameters::Shape (gmx) |
| AbstractTrajectoryAnalysisModuleTestFixture (gmx::test) | EnergyAccumulator< useEnergyGroups, false > (gmx) | RestraintManager::Impl (gmx) | NNPotForceProvider (gmx) | HelpWriterContext::Impl::SharedState (gmx) |
| accessor_basic (gmx) | EnergyAccumulatorGetter (gmx::anonymous_namespace{simd_kernel.h}) | PositionCalculationCollection::Impl (gmx) | NNPotMDModule (gmx::anonymous_namespace{nnpot.cpp}) | SignallerBuilder (gmx) |
| AffineTransformation (gmx) | EnergyAccumulatorGetter< false, false > (gmx::anonymous_namespace{simd_kernel.h}) | PmePpCommGpu::Impl (gmx) | NNPotModuleInfo (gmx) | SignalTest (gmx::test) |
| KeyValueTreeTransformRuleBuilder::AfterFrom (gmx) | EnergyAccumulatorGetter< false, true > (gmx::anonymous_namespace{simd_kernel.h}) | PmeLoadBalancing::Impl (gmx) | NNPotParameters (gmx) | Simd4DBool (gmx) |
| AlignedAllocationPolicy (gmx) | EnergyAccumulatorGetter< true, true > (gmx::anonymous_namespace{simd_kernel.h}) | PmeForceSenderGpu::Impl (gmx) | NNPotTopologyPreprocessor (gmx) | Simd4Double (gmx) |
| AlignedArray< double, N > (gmx) | EnergyAnalysisFrame (gmx) | PmeCoordinateReceiverGpu::Impl (gmx) | NNPotTopologyPreprocessorTest (gmx::test) | Simd4FBool (gmx) |
| AlignedArray< float, N > (gmx) | EnergyCalculationFrequencyErrors (gmx) | OptionsAssigner::Impl (gmx) | no_delete (gmx) | Simd4Float (gmx) |
| Allocator (gmx) | EnergyComparison (gmx::test) | ObservablesReducerBuilder::Impl (gmx) | BuildMDModulesNotifier<>::NoCallParameter (gmx) | SimdArrayRef (gmx::internal) |
| AllocatorTest (gmx::test) | EnergyData (gmx) | ObservablesReducer::Impl (gmx) | NoContentsMatch (gmx::test) | SimdBaseTest (gmx::test) |
| AllowAnyRankCount (gmx::test) | EnergyDriftTracker (gmx) | MrcDensityMapOfFloatWriter::Impl (gmx) | nonbonded_verlet_t (gmx) | SimdDBool (gmx) |
| AllVsiteBondedInteractions | EnergyEvaluator (anonymous_namespace{minimize.cpp}) | MrcDensityMapOfFloatReader::Impl (gmx) | NonbondedBenchmarkInfo (gmx) | SimdDIBool (gmx) |
| AnalysisArrayData (gmx) | EnergyFrame (gmx) | MdGpuGraph::Impl (gmx) | NoOptionalOutput (gmx::test) | SimdDInt32 (gmx) |
| AnalysisData (gmx) | EnergyFrameReader (gmx::test) | LocalTopologyChecker::Impl (gmx) | NormalDistribution (gmx) | SimdDInt32Tag (gmx) |
| AnalysisDataAverageModule (gmx) | EnergyFunctionProperties (gmx) | LocalAtomSetManager::Impl (gmx) | NormalModesTest (gmx::test::anonymous_namespace{normalmodes.cpp}) | SimdDouble (gmx) |
| AnalysisDataBinAverageModule (gmx) | EnergyGroupsPerCluster (gmx) | ListedForcesGpu::Impl (gmx) | NoseHooverChainsData (gmx) | SimdDoubleTag (gmx) |
| AnalysisDataDisplacementModule (gmx) | EnergyMinimizationTest (gmx::test::anonymous_namespace{minimize.cpp}) | ImdSession::Impl (gmx) | NoseHooverChainsElement (gmx) | SimdFBool (gmx) |
| AnalysisDataFrameAverageModule (gmx) | EnergyNameUnit (gmx) | HelpWriterContext::Impl (gmx) | NoseHooverGroup (gmx) | SimdFIBool (gmx) |
| AnalysisDataFrameAverager (gmx) | EnergyOutputTest (gmx::test::anonymous_namespace{energyoutput.cpp}) | HelpManager::Impl (gmx) | NoseHooverTemperatureCoupling (gmx) | SimdFInt32 (gmx) |
| AnalysisDataFrameHeader (gmx) | EnergyOutputTestParameters (gmx::test::anonymous_namespace{energyoutput.cpp}) | HelpLinks::Impl (gmx) | not_null (gmx::compat) | SimdFInt32Tag (gmx) |
| AnalysisDataFrameLocalData (gmx) | EnergySignaller (gmx) | GpuHaloExchange::Impl (gmx) | NoTextMatch (gmx::test) | SimdFloat (gmx) |
| AnalysisDataFrameLocalDataHandle (gmx) | EnergyTerm (gmx) | Gpu3dFft::ImplSyclVkfft::Impl (gmx) | NotImplementedError (gmx) | SimdFloatTag (gmx) |
| AnalysisDataFrameLocalDataSetHandle (gmx) | EnsembleTemperature (gmx) | Gpu3dFft::ImplSyclRocfft::Impl (gmx) | NullptrWrapper | nbnxn_atomdata_t::SimdMasks (gmx) |
| AnalysisDataFrameRef (gmx) | gmx_ga2la_t::Entry | Gpu3dFft::ImplOclVkfft::Impl (gmx) | HardwareTopology::Numa (gmx) | SimdSetZeroProxy (gmx) |
| AnalysisDataHandle (gmx) | EnumClassSuitsEnumerationArray (gmx) | Gpu3dFft::ImplHipVkFft::Impl (gmx) | HardwareTopology::NumaNode (gmx) | SimdTraits (gmx::internal) |
| AnalysisDataHandleImpl (gmx::internal) | EnumerationArray (gmx) | Gpu3dFft::ImplHipRocfft::Impl (gmx) | NumericalSplineTableInput (gmx) | SimpleHelpTopic (gmx) |
| AnalysisDataLifetimeModule (gmx) | EnumerationIterator (gmx) | Gpu3dFft::Impl (gmx) | NumPmeDomains | SimpleMdrunTest (gmx::test::anonymous_namespace{simple_mdrun.cpp}) |
| AnalysisDataModuleManager (gmx) | EnumerationWrapper (gmx) | GaussTransform3D::Impl (gmx) | NumRanksPerSimulation (gmx::test) | SimulationAlgorithmSetupError (gmx) |
| AnalysisDataModuleParallel (gmx) | EnumIndexStore (gmx::internal) | FileNameOptionManager::Impl (gmx) | NvshmemManager (gmx) | SimulationContext (gmx) |
| AnalysisDataModuleSerial (gmx) | EnumOption (gmx) | DomainDecompositionBuilder::Impl (gmx) |
| SimulationGroups |
| AnalysisDataParallelOptions (gmx) | EnumOptionInfo (gmx) | DeviceStreamManager::Impl (gmx) | SimulationInputHandle (gmx) |
| AnalysisDataPlotModule (gmx) | EnumOptionStorage (gmx) | DensityFittingForce::Impl (gmx) | ObservablesHistory | SimulationInputHandleImplDeleter (gmx::detail) |
| AnalysisDataPlotSettings (gmx) | EqualCaseInsensitive (gmx) | CommandLineParser::Impl (gmx) | ObservablesReducer (gmx) | SimulationInstabilityError (gmx) |
| AnalysisDataPointSetRef (gmx) | ErrorMessage (gmx::anonymous_namespace{exceptions.cpp}) | CommandLineModuleManager::Impl (gmx) | ObservablesReducerBuilder (gmx) | SimulationParticle |
| AnalysisDataProxy (gmx) | EwaldBoxZScaler | CommandLineHelpWriter::Impl (gmx) | ObservablesReducerIntegrationTest (gmx::test::anonymous_namespace{observablesreducer.cpp}) | SimulationRunner (gmx::test) |
| AnalysisDataSimpleHistogramModule (gmx) | EwaldSurfaceTermTest (gmx::test::anonymous_namespace{ewaldsurfaceterm.cpp}) | CommandLineHelpContext::Impl (gmx) | ObsoleteToolModule (anonymous_namespace{legacymodules.cpp}) | SimulationSignal (gmx) |
| AnalysisDataStorage (gmx) | ExactTextMatch (gmx::test) | AnalysisDataWeightedHistogramModule::Impl (gmx) | Offset (gmx) | SimulationSignaller (gmx) |
| AnalysisDataStorageFrame (gmx) | ExceptionInfo (gmx) | AnalysisDataSimpleHistogramModule::Impl (gmx) | omp_module_nthreads_t | SimulationTimeStep (gmx) |
| AnalysisDataStorageFrameData (gmx::internal) | ExceptionInitializer (gmx) | AnalysisDataModuleManager::Impl (gmx) | OpenClTraits (gmx) | SimulationWorkload (gmx) |
| AnalysisDataStorageImpl (gmx::internal) | ExclusionBlock (gmx) | AnalysisDataLifetimeModule::Impl (gmx) | OpenClTraits< cl_command_queue > (gmx) | SimulatorBuilder (gmx) |
| AnalysisDataTestFixture (gmx::test) | ExclusivePrefixSum (gmx) | AnalysisDataDisplacementModule::Impl (gmx) | OpenClTraits< cl_context > (gmx) | SimulatorConfig (gmx) |
| AnalysisDataTestInput (gmx::test) | ExpandedEnsembleElement (gmx) | AnalysisData::Impl (gmx) | OpenClTraits< cl_kernel > (gmx) | SimulatorEnv (gmx) |
| AnalysisDataTestInputFrame (gmx::test) | ExpandedEnsembleTest (gmx::test::anonymous_namespace{expandedensemble.cpp}) | AbstractCompositeHelpTopic::Impl (gmx) | OpenClTraits< cl_program > (gmx) | SimulatorStateData (gmx) |
| AnalysisDataTestInputPointSet (gmx::test) | ExponentialDistribution (gmx) | AbstractAnalysisData::Impl (gmx) | OpenClTraitsBase (gmx) | MpiComm::SingleRank (gmx) |
| AnalysisDataValue (gmx) | ExponentialMovingAverage (gmx) | ExclusionChecker::Impl | OptimisationResult (gmx) | SingleRankChecker (anonymous_namespace{resourcedivision.cpp}) |
| AnalysisDataVectorPlotModule (gmx) | ExponentialMovingAverageState (gmx) | BalanceRegion::Impl | OptionInfo (gmx) | Site (gmx) |
| AnalysisDataWeightedHistogramModule (gmx) | extents (gmx) | AtomProperties::Impl | OptionManagerContainer (gmx) | SlabCommSetup |
| AnalysisHistogramSettings (gmx) | extents_analyse< 0 > (gmx::detail) | Gpu3dFft::ImplCuFft (gmx) | Options (gmx) | SolveKernelParams |
| AnalysisHistogramSettingsInitializer (gmx) | extents_analyse< R, dynamic_extent, StaticExtents...> (gmx::detail) | Gpu3dFft::ImplCuFftMp (gmx) | OptionsAdapter (gmx::anonymous_namespace{pargs.cpp}) | SolveTest (gmx::test::anonymous_namespace{pmesolvetest.cpp}) |
| AnalysisNeighborhood (gmx) | extents_analyse< R, E0, StaticExtents...> (gmx::detail) | Gpu3dFft::ImplHipRocfft (gmx) | OptionsAssigner (gmx) | SolveTestBody (gmx::test::anonymous_namespace{pmesolvetest.cpp}) |
| AnalysisNeighborhoodPair (gmx) | ExtractClusterModuleTest (gmx::test::anonymous_namespace{extract_cluster.cpp}) | Gpu3dFft::ImplHipVkFft (gmx) | OptionsBehaviorCollection (gmx) | sort_along_vec_t |
| AnalysisNeighborhoodPairSearch (gmx) |
| Gpu3dFft::ImplOcl (gmx) | OptionSection (gmx) | spheresurfacebin |
| AnalysisNeighborhoodPositions (gmx) | Gpu3dFft::ImplOclVkfft (gmx) | OptionSectionHandle (gmx) | SplineAndSpreadTest (gmx::test::anonymous_namespace{pmesplinespreadtest.cpp}) |
| AnalysisNeighborhoodSearch (gmx) | DimParams::FepDimParams (gmx) | Gpu3dFft::ImplSycl (gmx) | OptionSectionImpl (gmx::internal) | SplineAndSpreadTestBody (gmx::test::anonymous_namespace{pmesplinespreadtest.cpp}) |
| AnalysisTemplate | FepStateSetting (gmx) | Gpu3dFft::ImplSyclBbfft (gmx) | OptionsFilter (gmx::anonymous_namespace{cmdlinehelpwriter.cpp}) | SplineCoefficients |
| AnalyticalSplineTableInput (gmx) | FEPStateValue | Gpu3dFft::ImplSyclMkl (gmx) | OptionsImpl (gmx::internal) | SplineData (gmx::test::anonymous_namespace{pmegathertest.cpp}) |
| AndersenTemperatureCoupling (gmx) | FileIOError (gmx) | Gpu3dFft::ImplSyclRocfft (gmx) | OptionsIterator (gmx) | splinedata_t |
| AnglePositionIterator (gmx::analysismodules::anonymous_namespace{angle.cpp}) | FileNameOption (gmx) | Gpu3dFft::ImplSyclVkfft (gmx) | OptionsListFormatter (gmx::anonymous_namespace{cmdlinehelpwriter.cpp}) | SplineTableTest (gmx::test::anonymous_namespace{splinetable.cpp}) |
| Any (gmx) | FileNameOptionInfo (gmx) | InconsistentInputError (gmx) | OptionsModifyingIterator (gmx) | StandardInputStream (gmx) |
| AnyOutputSupportedFiles (gmx::test) | FileNameOptionManager (gmx) | IndexBlockTest (gmx::test::anonymous_namespace{indexutil.cpp}) | OptionsModifyingTypeVisitor (gmx) | StartingBehaviorHandler (gmx::anonymous_namespace{handlerestart.cpp}) |
| ApicIdLayout (gmx::anonymous_namespace{cpuinfo.cpp}) | FileNameOptionStorage (gmx) | IndexFileWriterModule (gmx::analysismodules::anonymous_namespace{select.cpp}) | OptionsModifyingVisitor (gmx) | StatePropagatorData (gmx) |
| ApicInfo (gmx::anonymous_namespace{cpuinfo.cpp}) | FileTypeHandler (gmx::anonymous_namespace{filenameoption.cpp}) | IndexGroup | OptionStorageTemplate (gmx) | StaticAverageHistogram (gmx::anonymous_namespace{histogram.cpp}) |
| APIError (gmx) | FilteringExactTextMatch (gmx::test) | IndexGroupsAndNames (gmx) | OptionStorageTemplateSimple (gmx) | StaticDataFrameHeaderChecker (gmx::test::anonymous_namespace{mock_datamodule.cpp}) |
| ArrayRef (gmx) | FirstOrderPressureCoupling (gmx) | INeighborSearchSignallerClient (gmx) | OptionsTypeVisitor (gmx) | StaticDataPointsChecker (gmx::test::anonymous_namespace{mock_datamodule.cpp}) |
| ArrayRefWithPadding (gmx) | FixedCapacityVector (gmx) | InitialConstraintsTest (gmx::test::anonymous_namespace{initialconstraints.cpp}) | OptionsVisitor (gmx) | StaticDataPointsStorageChecker (gmx::test::anonymous_namespace{mock_datamodule.cpp}) |
| Atom2VsiteBond | FlagsTemplate (gmx) | INNPotModel (gmx) | OptionTemplate (gmx) | StaticLocalStorage |
| AtomData (gmx::test::anonymous_namespace{freeenergykernel.cpp}) | FlagTest (gmx::test) | InstallationPrefixInfo (gmx) | OptionValueConverterSimple (gmx) | StaticLocalStorageTest (gmx::test::anonymous_namespace{sycl_kernel_utils.cpp}) |
| AtomDistribution | FloatingPointDifference (gmx::test) | Int64Option (gmx) | OptionValueStoreNull (gmx) | StaticLog2 (gmx) |
| AtomicStructureFactor (gmx) | FloatingPointTolerance (gmx::test) | Int64OptionInfo (gmx) | OuterProductEvaluator (gmx) | StaticLog2< 0 > (gmx) |
| AtomIndex (gmx) | FloatOption (gmx) | Int64OptionStorage (gmx) | OutputAdapterContainer (gmx) | StaticLog2< 1 > (gmx) |
| AtomIndexExtremes (gmx) | FloatOptionInfo (gmx) | IntegerBox (gmx) | OutputFile | StdioTestHelper (gmx::test) |
| AtomIndexSet | FloatOptionStorage (gmx) | IntegerOption (gmx) | OutputQuantities (gmx::test::anonymous_namespace{pairs.cpp}) | StepValueParams (gmx::test::anonymous_namespace{h5md_timedatablock.cpp}) |
| AtomInfoWithinMoleculeBlock (gmx) | FloatTypeMatcher (gmx::test) | IntegerOptionInfo (gmx) | OutputQuantities (gmx::test::anonymous_namespace{freeenergykernel.cpp}) | StepValues (gmx::test::anonymous_namespace{h5md_timedatablock.cpp}) |
| AtomInMolblock | FmmForceProviderBuilder (gmx) | IntegerOptionStorage (gmx) | OutputQuantities (gmx::test::anonymous_namespace{bonded.cpp}) | StepWorkload (gmx) |
| AtomIterator | FmmMDModule (gmx::anonymous_namespace{fmm_mdmodule.cpp}) | GpuTimers::Interaction (gmx) | OutputRequirementOptionDirector (gmx) | StopConditionSignal (gmx) |
| AtomPair (gmx) | FmmMdpOptions (gmx) | InteractionDefinitions | OutputRequirements (gmx) | StopConditionTime (gmx) |
| AtomPair (anonymous_namespace{lincs.cpp}) | FmmMdpValidator (gmx) | InteractionList | OutputSelector (gmx) | StopHandler (gmx) |
| AtomPairlist (gmx) | FmmModuleInfo (gmx) | InteractionListHandle | OutputSelectorDeathTest (gmx::test) | StopHandlerBuilder (gmx) |
| AtomProperties | ForceBuffers (gmx) | InteractionOfType |
| StringCompare (gmx) |
| AtomProperty | ForceBuffersView (gmx) | InteractionsOfType | StringDataSetType (gmx::test::anonymous_namespace{h5md_fixeddataset.cpp}) |
| AtomProxy | ForceElement (gmx) | InteractiveMD (gmx) | HardwareTopology::Package (gmx) | StringFormatter (gmx) |
| AtomRange | ForceHelperBuffers | InteractiveMolecularDynamics (gmx) | PackedJClusterList (gmx) | StringInputStream (gmx) |
| AtomsAdjacencyListElement | ForceOutputs (gmx) | InteractiveMolecularDynamicsModuleInfo (gmx) | PackHaloExternal | StringKeywordMatchItem (anonymous_namespace{sm_keywords.cpp}) |
| AtomToThreadMap | ForceProviderInput (gmx) | InteractiveTestHelper (gmx::test) | PackHaloInternal | StringOption (gmx) |
| Awh (gmx) | ForceProviderOutput (gmx) | InterdependentTask (gmx) | PaddedVector (gmx) | StringOptionInfo (gmx) |
| AwhEnergyBlock (gmx) | ForceProviders (gmx) | InternalError (gmx) | PaddedVectorTest (gmx::test) | StringOptionStorage (gmx) |
| AwhParams (gmx) | ForceWithShiftForces (gmx) | InvalidInputError (gmx) | PaddingTraits (gmx::detail) | StringOutputStream (gmx) |
| AwhReader | ForceWithVirial (gmx) | IonSwapping (gmx) | PageAlignedAllocationPolicy (gmx) | StringTable |
| AwhTestParameters (gmx::test) | ForeignLambdaTerms | IOptionManager (gmx) | PairDistance (gmx::analysismodules::anonymous_namespace{pairdist.cpp}) | StringTableBuilder |
|
| FormatFunctorForInt (gmx::test::anonymous_namespace{naming.cpp}) | IOptionsBehavior (gmx) | PairDistanceModuleData (gmx::analysismodules::anonymous_namespace{pairdist.cpp}) | StringTableEntry |
| FormatterVariant (gmx::test::detail) | IOptionsContainer (gmx) | PairDistValue (gmx) | StringTestBase (gmx::test) |
| BalanceRegion | FormatterVariant< Enum, typename std::enable_if_t< std::is_enum_v< Enum > > > (gmx::test::detail) | IOptionsContainerWithSections (gmx) | pairHash (gmx) | StringToEnumValueConverter (gmx) |
| KeyValueTreeTransformRuleBuilder::Base (gmx) | FramePairManager (gmx::test) | IOptionSectionStorage (gmx) | PairlistParams (gmx) | StringTypes (gmx::test::anonymous_namespace{h5md_fixeddataset.cpp}) |
| BaseEntry | FreeEnergyDispatch (gmx) | IOptionsFormatter (gmx::anonymous_namespace{cmdlinehelpwriter.cpp}) | PairlistSet (gmx) | Subscriber (gmx::test::anonymous_namespace{observablesreducer.cpp}) |
| basic_mdspan (gmx) | FreeEnergyParameterTest (gmx::test::anonymous_namespace{freeenergyparameters.cpp}) | IOptionValueStore (gmx) | PairlistSets (gmx) | ObservablesReducerBuilder::Impl::Subscription (gmx) |
| BasicAverageHistogramModule (gmx::internal) | FreeEnergyParameterTestParameters (gmx::test::anonymous_namespace{freeenergyparameters.cpp}) | IOutputAdapter (gmx) | PairSearch (gmx) | SuccessListener (gmx::test::anonymous_namespace{testinit.cpp}) |
| BasicHistogramImpl (gmx::internal) | FreeEnergyPerturbationData (gmx) | IProgramContext (gmx) | PairsearchWork (gmx) | SurfaceAreaCalculator (gmx) |
| BasicMatrix3x3 (gmx) | FreeVolume (gmx::analysismodules::anonymous_namespace{freevolume.cpp}) | IRestraintPotential (gmx) | ParallelConsistencyError (gmx) | swap_compartment |
| BasicVector (gmx) | FrictionMetricTest (gmx::test) | ISerializer (gmx) | UniformRealDistribution::param_type (gmx) | SwapCoordinates (gmx) |
| BenchmarkSystem (gmx) | functor_wrapper (gmx) | ISignaller (gmx) | UniformIntDistribution::param_type (gmx) | SwapCoordinatesModuleInfo (gmx) |
| BerendsenTemperatureCoupling (gmx) | FusedGpuHaloExchange (gmx) | ISimulator (gmx) | TabulatedNormalDistribution::param_type (gmx) | SynopsisFormatter (gmx::anonymous_namespace{cmdlinehelpwriter.cpp}) |
| Bias (gmx) |
| ISimulatorElement (gmx) | NormalDistribution::param_type (gmx) | SystemMomenta |
| BiasCoupledToSystem (gmx) | isIntegralConstant (gmx) | GammaDistribution::param_type (gmx) | SystemMomentum |
| BiasFepLambdaStateTest (gmx::test) | GammaDistribution (gmx) | IsSerializableEnum (gmx) | ExponentialDistribution::param_type (gmx) |
|
| BiasGrid (gmx) | GatherTest (gmx::test::anonymous_namespace{pmegathertest.cpp}) | IsSerializableType (gmx) | ParameterizedMdrunTestFixture (gmx::test) |
| BiasOutputSetup | GatherTestBody (gmx::test::anonymous_namespace{pmegathertest.cpp}) | IsTuple (gmx::test::detail) | nbnxn_atomdata_t::Params (gmx) | t_bb |
| BiasParams (gmx) | GaussianOn1DLattice (gmx) | IsTuple< std::tuple< Ts...> > (gmx::test::detail) | ParamsToFormatterVariants (gmx::test::detail) | t_compare_value |
| BiasState (gmx) | GaussianSpreadKernelParameters (gmx) | IsVectorOfSerializableType (gmx::test::anonymous_namespace{checkpointdata.cpp}) | ParamsToFormatterVariants< std::tuple< Ts...> > (gmx::test::detail) | t_compiler_data |
| BiasStateTest (gmx::test) | GaussTransform3D (gmx) | ITemperatureCouplingImpl (gmx) | ParrinelloRahmanBarostat (gmx) | t_conect (gmx::analysismodules::anonymous_namespace{sasa.cpp}) |
| BiasTest (gmx::test) | Grid::Geometry (gmx) | TestValues::TestValueGenerator::Iterator (gmx::test::anonymous_namespace{checkpointdata.cpp}) | PartialDeserializedTprFile | t_coordselection |
| BiasWriter (gmx) | GlobalCommandLineHelpContext (gmx) | Range::iterator (gmx) | partition | t_edflood (anonymous_namespace{edsam.cpp}) |
| BinaryInformationSettings (gmx) | GlobalCommunicationHelper (gmx) | ITextBlockMatcher (gmx::test) | PbcAiuc | t_edvecs (anonymous_namespace{edsam.cpp}) |
| bonded_threading_t | gmx_ana_index_t | ITextBlockMatcherSettings (gmx::test) | PdbAtomEntry | t_eigvec (anonymous_namespace{edsam.cpp}) |
| BondedInteraction | gmx_ana_indexgrps_t | ITopologyHolderClient (gmx) | PeriodicActionsTest (gmx::test) | t_filenm |
| BondedInteractionList | gmx_ana_indexmap_t | ITopologyProvider (gmx) | PerLambdaInformation (gmx::test::anonymous_namespace{expandedensemble.cpp}) | t_forcetable |
| BondedInteractionsTest (gmx::test) | gmx_ana_pos_t | ITrajectorySignallerClient (gmx) | PhysicalNodeCommunicator (gmx) | t_idef |
| BooleanOption (gmx) | gmx_ana_poscalc_t | ITrajectoryWriterClient (gmx) | PlainPairlist (gmx) | t_ilist |
| BooleanOptionInfo (gmx) | gmx_ana_selcollection_t | IWrapper (gmx::anonymous_namespace{helpwritercontext.cpp}) | PlainPairlistRanges (gmx) | t_interaction_function |
| BooleanOptionStorage (gmx) | gmx_ana_selmethod_help_t |
| PlainPairlistTest (gmx::test::anonymous_namespace{plainpairlist.cpp}) | t_iparams |
| BoolType (gmx) | gmx_ana_selmethod_t | PlanSetupData (gmx) | t_mapping |
| BoundingBox (gmx) | gmx_ana_selparam_t | JClusterList (gmx) | PlumedForceProvider (gmx) | t_matrix |
| BoundingBox1D (gmx) | gmx_ana_selvalue_t | AtomPairlist::JEntry (gmx) | PlumedInputFilename (gmx) | t_mdatoms |
| BoxDeformationHandle (gmx) | gmx_cache_protect_t (gmx) |
| PlumedMDModule (gmx::anonymous_namespace{plumedMDModule_stub.cpp}) | t_methoddata_compare |
| BoxDeformationTest (gmx::test::anonymous_namespace{boxdeformation.cpp}) | gmx_cmap_t | PlumedMDModule (gmx::anonymous_namespace{plumedMDModule.cpp}) | t_methoddata_distance |
| TopologyHolder::Builder (gmx) | gmx_cmapdata_t | KernelInputParameters (gmx::test::anonymous_namespace{kernel_test.cpp}) | PlumedModuleInfo (gmx) | t_methoddata_kweval |
| BuildMDModulesNotifier (gmx) | gmx_device_runtime_data_t | KernelLaunchConfig | pme_grid_comm_t | t_methoddata_kwint |
| BuildMDModulesNotifier< CurrentCallParameter, CallParameter...> (gmx) | gmx_domdec_constraints_t | KernelName (gmx::test::anonymous_namespace{sycl_kernel_utils.cpp}) | pme_overlap_t | t_methoddata_kwreal |
| BuildMDModulesNotifier<> (gmx) | gmx_domdec_specat_comm_t | KernelOptions (gmx::test::anonymous_namespace{plainpairlist.cpp}) | pme_setup_t (gmx) | t_methoddata_kwstr (anonymous_namespace{sm_keywords.cpp}) |
|
| gmx_domdec_zone_size_t (gmx) | KernelOptions (gmx::test::anonymous_namespace{kernel_test.cpp}) | PmeAndFftGrids | t_methoddata_pos |
| gmx_enerdata_t | KeyValueTreeBuilder (gmx) | PmeAtomComm | t_methoddata_same |
| HardwareTopology::Cache (gmx) | gmx_enfrot | KeyValueTreeObjectArrayBuilder (gmx) | PmeBSplineModuliTest (gmx::test::anonymous_namespace{pmebsplinetest.cpp}) | t_nbparam |
| CacheLineAlignedFlag (gmx) | gmx_enfrotgrp | KeyValueTreeObjectBuilder (gmx) | PmeCoordinateReceiverGpu (gmx) | t_oriresdata |
| CalculateAcceptanceWeightSimple (gmx::test::anonymous_namespace{expanded.cpp}) | gmx_ffparams_t | KeyValueTreePath (gmx) | PmeForceSenderGpu (gmx) | t_pargs |
| CalcVerletBufferParameters (gmx) | gmx_fft_fftpack | KeyValueTreeTransformRuleBuilder (gmx) | PmeGpu | t_partition_item |
| cellInfo (gmx) | gmx_fft_fftw3 | KeyValueTreeTransformRulesScoped (gmx) | PmeGpuAtomParams | t_pbc |
| ChainIdFiller | gmx_fft_mkl | KeyValueTreeUniformArrayBuilder (gmx) | PmeGpuConstParams | t_pullcoord |
| CheckpointData (gmx) | gmx_ga2la_t | KeyValueTreeValueBuilder (gmx) | PmeGpuDynamicParams | t_register_method |
| CheckpointDataTest (gmx::test::anonymous_namespace{checkpointdata.cpp}) | gmx_help_make_index_group | KeywordDetailsHelpTopic (gmx::anonymous_namespace{selhelp.cpp}) | PmeGpuGridParams | t_state |
| CheckpointError (gmx) | gmx_hw_opt_t | KeywordsHelpTopic (gmx::anonymous_namespace{selhelp.cpp}) | PmeGpuHaloExchange | t_swapgrp |
| CheckpointHandler (gmx) | gmx_kernel_timing_data_t |
| PmeGpuKernelParams | t_symbuf |
| CheckpointHeaderContents | gmx_localtop_t | PmeGpuProgram | t_UmbrellaHeader |
| CheckpointHelper (gmx) | gmx_molblock_t | LambdaInformation (gmx::test::anonymous_namespace{expandedensemble.cpp}) | PmeGpuProgramImpl | t_UmbrellaWindow |
| CheckpointHelperBuilder (gmx) | gmx_moltype_t | LangevinTest (gmx::test::anonymous_namespace{langevin.cpp}) | PmeGpuSettings | t_xpmelmt |
| CheckpointOptions (gmx) | gmx_multisim_t | LangevinTestParameters (gmx::test::anonymous_namespace{langevin.cpp}) | PmeGpuSpecific | TabulatedNormalDistribution (gmx) |
| cl_nbparam_params (gmx) | gmx_pme_comm_n_box_t | LastStepSignaller (gmx) | PmeGpuStaging | Task (anonymous_namespace{lincs.cpp}) |
| ClfftInitializer (gmx) | gmx_pme_comm_vir_ene_t | layout_right (gmx) | pmegrid_t | TemperatureCouplingData (gmx) |
| ClHandle (gmx) | gmx_pme_pp | LeapFrogKernel | pmegrids_t | TerminationHelper (gmx::test) |
| CMainCommandLineModule (gmx::anonymous_namespace{cmdlinemodulemanager.cpp}) | gmx_pme_t | LeapFrogTest (gmx::test::anonymous_namespace{leapfrog.cpp}) | PmeLoadBalanceHelper (gmx) | TestDevice (gmx::test) |
| TextTableFormatter::Impl::ColumnData (gmx) | gmx_potfit | LeapFrogTestParameters (gmx::test::anonymous_namespace{leapfrog.cpp}) | PmeLoadBalancing (gmx) | TestDimensions (gmx::test::anonymous_namespace{h5md_fixeddataset.cpp}) |
| ColvarProxyGromacs (gmx) | gmx_repl_ex | LegacyEnumOption (gmx) | PmePpCommGpu (gmx) | TestDimensions (gmx::test::anonymous_namespace{h5md_datasetbase.cpp}) |
| ColvarsForceProvider (gmx) | gmx_reverse_top_t | LegacyInput (gmx) | PmeShared | TestException (gmx::test) |
| ColvarsForceProviderState (gmx) | gmx_sel_evaluate_t | LegacyMdrunOptions (gmx) | PmeSolve | TestFileInputRedirector (gmx::test) |
| ColvarsMDModule (gmx::anonymous_namespace{colvarsMDModule_stub.cpp}) | gmx_sel_lexer_t | LegacySimulator (gmx) | PmeSolveKernel | TestFileManager (gmx::test) |
| ColvarsMDModule (gmx::anonymous_namespace{colvarsMDModule.cpp}) | gmx_sel_mempool_block_t | LegacySimulatorData (gmx) | PmeTest (gmx::test::anonymous_namespace{pmetest.cpp}) | TestFileOutputRedirector (gmx::test) |
| ColvarsModuleInfo (gmx) | gmx_sel_mempool_t | LennardJonesCalculator (gmx) | PointState (gmx) | TestFrameDimensions (gmx::test::anonymous_namespace{h5md_framedataset.cpp}) |
| ColvarsOptions (gmx) | gmx_slabdata | LennardJonesCalculator< calculateEnergies, InteractionModifiers::ForceSwitch > (gmx) | GaussianSpreadKernelParameters::PositionAndAmplitude (gmx) | TestHardwareEnvironment (gmx::test) |
| ColvarsPreProcessor (gmx) | gmx_sparsematrix | LennardJonesCalculator< calculateEnergies, InteractionModifiers::PotSwitch > (gmx) | PositionCalculationCollection (gmx) | TestOptionsProvider (gmx::test) |
| ColvarsSimulationsParameters (gmx) | gmx_specatsend_t | LennardJonesCalculator< false, InteractionModifiers::PotShift > (gmx) | PosixMemstream (gmx::test) | TestOptionsRegistry (gmx::test::anonymous_namespace{testoptions.cpp}) |
| COMInPlaceTest (gmx::test::anonymous_namespace{com.cpp}) | gmx_tng_trajectory | LennardJonesCalculator< true, InteractionModifiers::PotShift > (gmx) | PotentialPointData (gmx) | TestParticleInsertion (gmx) |
| CommandLine (gmx::test) | gmx_wallclock_gpu_nbnxn_t | Lincs (gmx) | PpCommManager (gmx) | TestProgramContext (gmx::test::anonymous_namespace{testinit.cpp}) |
| CommandLineCommonOptionsHolder (gmx) | gmx_wallclock_gpu_pme_t | LincsDeviations (gmx) | PpForceCommManager (gmx) | TestReferenceChecker (gmx::test) |
| CommandLineHelpContext (gmx) | gmx_walltime_accounting | LincsGpu (gmx) | PpRanks | TestReferenceData (gmx::test) |
| CommandLineHelpModule (gmx) | GmxAnaTestBase (gmx::test) | LinkFrontierAtom (gmx) | PpRanksSendFInfo | TestReferenceDataImpl (gmx::test::internal) |
| CommandLineHelpWriter (gmx) | Gpu3dFft (gmx) | ListedForces | PrefixFormatter (gmx::test) | TestSystem (gmx::test) |
| CommandLineModuleGroup (gmx) | GpuAwareMpiTest (gmx::test::anonymous_namespace{gpu_aware_mpi.cpp}) | ListInput (gmx::test::anonymous_namespace{pairs.cpp}) | PreprocessingAtomTypes | TestSystem (gmx::test::anonymous_namespace{pmegathertest.cpp}) |
| CommandLineModuleGroupData (gmx) | GpuConfigurationCapabilities (gmx) | ListInput (gmx::test::anonymous_namespace{freeenergykernel.cpp}) | PreprocessingBondAtomType | TestValues::TestValueGenerator (gmx::test::anonymous_namespace{checkpointdata.cpp}) |
| CommandLineModuleManager (gmx) | GpuFepHostData (gmx) | ListOfLists (gmx) | PreprocessResidue | TestValues (gmx::test::anonymous_namespace{checkpointdata.cpp}) |
| CommandLineModuleManagerTestBase (gmx::test) | GpuFeplist (gmx) | LocalAtomSet (gmx) | PrintReplicaExchangeParametersToString (gmx::test) | TextFileMatch (gmx::test) |
| CommandLineModuleSettings (gmx) | GpuForceReduction (gmx) | LocalAtomSetManager (gmx) | ProcessFrameConversion (gmx) | TextInputFile (gmx) |
| CommandLineParser (gmx) | GpuHaloExchange (gmx) | LocalSettleData | HardwareTopology::ProcessingUnit (gmx) | TextInputStream (gmx) |
| CommandLineProgramContext (gmx) | GpuHaloExchangeNvshmemHelper (gmx) | LocalTopologyChecker (gmx) | Profiling (gmx) | TextLineWrapper (gmx) |
| CommandLineTestBase (gmx::test) | GpuPairlist (gmx) | LogEntryWriter (gmx) | Propagator (gmx) | TextLineWrapperSettings (gmx) |
| CommandLineTestHelper (gmx::test) | GpuPairlistSorting (gmx) | LoggerBuilder (gmx) | PropagatorConnection (gmx) | TextOutputFile (gmx) |
| CommandsHelpTopic (gmx::anonymous_namespace{cmdlinehelpmodule.cpp}) | GpuRegionTimerImpl | LoggerOwner (gmx) | PropagatorTag (gmx) | TextOutputStream (gmx) |
| CommSetup (gmx) | GpuRegionTimerWrapper | LoggerTestHelper (gmx::test) | PTCouplingArrays (gmx) | TextReader (gmx) |
| CompileTimeStringJoin (gmx) | GpuTaskAssignments (gmx) | LoggingSignaller (gmx) | pull_coord_work_t | TextReaderTest (gmx::test::anonymous_namespace{textreader.cpp}) |
| CompositeHelpTopic (gmx) | GpuTaskAssignmentsBuilder (gmx) | HardwareTopology::LogicalProcessor (gmx) | pull_group_work_t | TextReaderTestParams (gmx::test::anonymous_namespace{textreader.cpp}) |
| CompositeSimulatorElement (gmx) | GpuTaskMapping (gmx) | CpuInfo::LogicalProcessor (gmx) | PullCoordExpressionParser (gmx) | TextTableFormatter (gmx) |
| ComputeDebyeScattering (gmx) | GpuTimers (gmx) | LogLevelHelper (gmx) | DimParams::PullDimParams (gmx) | TextWriter (gmx) |
| ComputeGlobalsElement (gmx) | Grid (gmx) | LogWriteHelper (gmx) | PullElement (gmx) | thread_work_t |
| ComSumContents | GridAxis (gmx) |
| PullIntegrationTest (gmx::test::anonymous_namespace{pull.cpp}) | ThreadedCellIndexer (gmx) |
| ConfMatch (gmx::test) | DomainCommBackward::GridClusterRange (gmx) |
| ThreadedForceBuffer (gmx) |
| Constraints (gmx) | GridColumnInfo (gmx::anonymous_namespace{domainpaircomm.cpp}) | HardwareTopology::Machine (gmx) | ThreadForceBuffer (gmx) |
| ConstraintsElement (gmx) | GridConverter | ManualOutputFile (gmx::test::anonymous_namespace{extract_cluster.cpp}) | QMInputFileName (gmx) | ThreadingInfo (gmx) |
| ConstraintsParam (gmx) | GridDimensions (gmx) | MappedUnionFinder (gmx) | QMMM (gmx::anonymous_namespace{qmmm.cpp}) | ThreeFry2x64 (gmx) |
| ConstraintsTest (gmx::test::anonymous_namespace{constr.cpp}) | GridPoint (gmx) | layout_right::mapping (gmx) | QMMMForceProvider (gmx) | ThreeFry2x64Fast (gmx) |
| ConstraintsVerifier (gmx::test::anonymous_namespace{constr.cpp}) | GridSet (gmx) | Matrix3x3ToString (gmx::test::anonymous_namespace{parrinellorahman.cpp}) | QMMMForceProviderState (gmx) | ThreeFry2x64General (gmx) |
| ContinuationFramePairManager (gmx::test::anonymous_namespace{exactcontinuation.cpp}) | GridSetData (gmx) | MaxNumFrames (gmx::test) | QMMMInputGenerator (gmx) | ThrowLocation (gmx) |
| ConvertTprInfo (gmx) | GridWork (gmx) | MDAtoms (gmx) | QMMMModuleInfo (gmx) | TimeOptionScaler (gmx::anonymous_namespace{timeunitmanager.cpp}) |
| ConvertTprNoVelocityTest (gmx::test::anonymous_namespace{convert-tpr-fixture.h}) | GromacsException (gmx) | MDLogger (gmx) | QMMMOptions (gmx) | TimeStep (gmx) |
| CorrelationBlockData::CoordData (gmx) | GromppMtsOpts (gmx) | MDModules (gmx) | QMMMOutputProvider (gmx::anonymous_namespace{qmmm.cpp}) | TimeUnitBehavior (gmx) |
| CoordinatesAndBoxPreprocessed (gmx) | GromppTest (anonymous_namespace{grompp.cpp}) | MDModulesAtomsRedistributedSignal (gmx) | QMMMParameters (gmx) | TimeUnitManager (gmx) |
| CoordState (gmx) | OptionSectionImpl::Group (gmx::internal) | MDModulesCheckpointReadingBroadcast (gmx) | QMMMSimulationParameterSetup (gmx::anonymous_namespace{qmmm.cpp}) | TimingOptions (gmx) |
| HardwareTopology::Core (gmx) | GyrateModuleTest (gmx::test) | MDModulesCheckpointReadingDataOnMain (gmx) | QuadraticSplineTable (gmx) | TimingTest (gmx::test::anonymous_namespace{timing.cpp}) |
| BoundingBox::Corner (gmx) |
| MdModulesCoulombTypeInfo (gmx) |
| ToleranceError (gmx) |
| DispersionCorrection::Correction | MDModulesDirectProvider (gmx) | KeyValueTreeTransformRuleBuilder::ToObject (gmx) |
| CorrelationBlockData (gmx) | H5md (gmx) | MDModulesEnergyOutputToDensityFittingRequestChecker (gmx) | Range (gmx) | TopologyData (gmx) |
| CorrelationGrid (gmx) | H5mdCloser (gmx) | MDModulesEnergyOutputToNNPotRequestChecker (gmx) | RangeError (gmx) | TopologyHolder (gmx) |
| CorrelationTensor (gmx) | H5mdDataSetBase (gmx) | MDModulesEnergyOutputToQMMMRequestChecker (gmx) | RangePartitioning (gmx) | TopologyInformation (gmx) |
| CoulombCalculator (gmx) | H5mdDataSetBaseBasicVectorTest (gmx::test::anonymous_namespace{h5md_datasetbase.cpp}) | MDModuleSetupError (gmx) | ObservablesReducerIntegrationTest::RankData (gmx::test::anonymous_namespace{observablesreducer.cpp}) | TopologyManager (gmx::test) |
| CoulombCalculator< KernelCoulombType::EwaldAnalytical > (gmx) | H5mdDataSetBaseTest (gmx::test::anonymous_namespace{h5md_datasetbase.cpp}) | MDModulesNotifier (gmx) | Rdf (gmx::analysismodules::anonymous_namespace{rdf.cpp}) | TorchModel (gmx) |
| CoulombCalculator< KernelCoulombType::EwaldTabulated > (gmx) | H5mdDataSetBuilder (gmx) | MDModulesNotifiers (gmx) | RdfModuleData (gmx::analysismodules::anonymous_namespace{rdf.cpp}) | KeyValueTreeTransformRuleBuilder::ToValue (gmx) |
| CoulombCalculator< KernelCoulombType::RF > (gmx) | H5mdDataSetBuilderTestBase (gmx::test::anonymous_namespace{h5md_datasetbuilder.cpp}) | MDModulesPairlistConstructedSignal (gmx) | ReadCheckpointDataHolder (gmx) | TpiTest (gmx::test::anonymous_namespace{tpitest.cpp}) |
| interaction_const_t::CoulombSettings | H5mdFixedDataSet (gmx) | MDModulesWriteCheckpointData (gmx) | RealFunctionvalueAtCoordinate (gmx) | TprAndFileManager (gmx::test) |
| CpuInfo (gmx) | H5mdFrameDataSet (gmx) | MdrunCompressedXOutputTest (anonymous_namespace{compressed_x_output.cpp}) | ReduceKernel | TpxFileHeader |
| Constraints::CreationHelper (gmx) | H5mdFrameDataSetBuilder (gmx) | MdRunInputFilename (gmx) | RefDataFilenameMaker (gmx::test) | TrajectoryAnalysisCommandLineRunner (gmx) |
| CromerMannParameters (gmx) | H5mdParticleBlock (gmx) | Mdrunner (gmx) | ReferenceDataTestEventListener (gmx::test::anonymous_namespace{refdata.cpp}) | TrajectoryAnalysisModule (gmx) |
| CrossCorrelationEvaluationHelperValues (gmx::anonymous_namespace{densityfit.cpp}) | H5mdParticleBlockBuilder (gmx) | MdrunnerBuilder (gmx) | ReferenceFileNames (gmx::test) | TrajectoryAnalysisModuleData (gmx) |
| CrossCorrelationGradientAtVoxel (gmx::anonymous_namespace{densityfit.cpp}) | H5mdScalarFrameDataSet (gmx) | MdrunNoAppendContinuationIsExact (gmx::test::anonymous_namespace{exactcontinuation.cpp}) | StatePropagatorData::ReferenceTemperatureHelper (gmx) | TrajectoryAnalysisModuleDataBasic (gmx::anonymous_namespace{analysismodule.cpp}) |
| CrystallographicLabels (gmx) | H5mdTestBase (gmx::test) | MdrunOptions (gmx) | ReferenceTemperatureManager (gmx) | TrajectoryAnalysisModuleTestFixture (gmx::test) |
| CubicSplineTable (gmx) | H5mdTimeDataBlock (gmx) | MdrunRerunTest (gmx::test::anonymous_namespace{rerun.cpp}) | RepeatingOptionSection (gmx) | TrajectoryAnalysisRunnerCommon (gmx) |
| Cutoffs (gmx) | H5mdTimeDataBlockBuilder (gmx) | MdrunTestFixture (gmx::test) | RepeatingOptionSectionHandle (gmx) | TrajectoryAnalysisSettings (gmx) |
|
| H5mdTypeTest (gmx::test::anonymous_namespace{h5md_type.cpp}) | MdrunTestFixtureBase (gmx::test) | RepeatingOptionSectionStorage (gmx) | TrajectoryComparison (gmx::test) |
| HaloExchange (gmx) | MembedHolder (gmx) | ReplicaExchangeParameters | TrajectoryElement (gmx) |
| DataFileFinder (gmx) | HaloExchangeTest (gmx::test::anonymous_namespace{haloexchange_mpi.cpp}) | MempoolGroupReserver (anonymous_namespace{evaluate.cpp}) | SelectionOptionManager::Impl::RequestsClearer (gmx) | TrajectoryElementBuilder (gmx) |
| DataFileInfo (gmx) | HaloExchangeTestData (gmx::test::anonymous_namespace{haloexchange_mpi.cpp}) | MempoolSelelemReserver (anonymous_namespace{evaluate.cpp}) | RequireEvenRankCountWithAtLeastFourRanks (gmx::test::anonymous_namespace{threadaffinity_mpi.cpp}) | TrajectoryFileOpener (gmx) |
| DataFileOptions (gmx) | HaloExchangeTestParameters (gmx::test::anonymous_namespace{haloexchange_mpi.cpp}) | MessageStringCollector (gmx) | RequireMinimumRankCount (gmx::test) | TrajectoryFrame (gmx) |
| DataSetDimensions (gmx::test::anonymous_namespace{h5md_datasetbuilder.cpp}) | HaloMpiRequests (gmx) | MessageStringContext (gmx) | RequireRankCount (gmx::test) | TrajectoryFrameMatchSettings (gmx::test) |
| DataStorageRequester (gmx::test::anonymous_namespace{mock_datamodule.cpp}) | HardwareTopology (gmx) | MessageWriterFileNoThrow (gmx::anonymous_namespace{exceptions.cpp}) | ResetHandler (gmx) | TrajectoryFrameReader (gmx::test) |
| dd_corners_t | HashAnArray (anonymous_namespace{device_management_common.cpp}) | MessageWriterString (gmx::anonymous_namespace{exceptions.cpp}) | ResInfo (gmx::analysismodules::anonymous_namespace{dssp.cpp}) | TrajectoryFrameWriter (gmx) |
| DDBalanceRegionHandler | HashedMap (gmx) | MessageWriterTextWriter (gmx::anonymous_namespace{exceptions.cpp}) | RestraintForceProvider (gmx) | TrajectoryFrameWriterTest (gmx::test) |
| DDGridSetup | HbondModuleTest (gmx::test) | methoddata_insolidangle | RestraintManager (gmx) | TrajectorySignaller (gmx) |
| DefaultExecutableEnvironment (gmx::anonymous_namespace{cmdlineprogramcontext.cpp}) | HbondStorage (gmx::analysismodules::anonymous_namespace{hbond.cpp}) | methoddata_merge | RestraintMDModule (gmx) | TrajectoryTolerances (gmx::test) |
| DefaultInitializationAllocator (gmx) | HbondStorageFrame (gmx::analysismodules::anonymous_namespace{hbond.cpp}) | methoddata_permute | RestraintMDModuleImpl (gmx) | TranslateAndScale (gmx) |
| DefaultInputRedirector (gmx::anonymous_namespace{fileredirector.cpp}) | HelpExportCompletion (gmx::anonymous_namespace{cmdlinehelpmodule.cpp}) | MimicCommunicator (gmx) | ReverseTopOptions |
|
| DefaultOutputRedirector (gmx::anonymous_namespace{fileredirector.cpp}) | HelpExportReStructuredText (gmx::anonymous_namespace{cmdlinehelpmodule.cpp}) | MimicTest (gmx::test) | RocfftInitializer (gmx) |
| DefaultProgramContext (gmx::anonymous_namespace{programcontext.cpp}) | HelpLinks (gmx) | MindistAction (gmx::anonymous_namespace{nbsearch.cpp}) | RocfftPlan (gmx) | UmbrellaOptions |
| DensityFitting (gmx::anonymous_namespace{densityfitting.cpp}) | HelpManager (gmx) | MissingElementConnectionError (gmx) | RootHelpTopic (gmx::anonymous_namespace{cmdlinehelpmodule.cpp}) | UnderlyingType (detail) |
| DensityFittingAmplitudeLookup (gmx) | HelpWriterContext (gmx) | MockAverageHistogram (gmx::test::anonymous_namespace{histogram.cpp}) | RotationTest (gmx::test::anonymous_namespace{pull_rotation.cpp}) | UniformIntDistribution (gmx) |
| DensityFittingForce (gmx) | HistogramSize (gmx) | MockHardwareTopologyTest (gmx::test::anonymous_namespace{mockhardwaretopology.cpp}) | RstParagraphIterator (gmx) | UniformRealDistribution (gmx) |
| DensityFittingForceProvider (gmx) | history_t | MockModule (gmx::test) | RVecMatcher (gmx::test) | UnionFinder (gmx) |
| DensityFittingForceProviderState (gmx) | HostAllocationPolicy (gmx) | MockOption (gmx::test::anonymous_namespace{abstractoptionstorage.cpp}) |
| UnitCellInfo |
| DensityFittingModuleInfo (gmx) | HostAllocatorTest (gmx::test) | MockOptionsModule (gmx::test) | UnpackAndAddHaloInternal |
| DensityFittingOptions (gmx) | HostAllocatorTestNoMem (gmx::test) | MockOptionStorage (gmx::test::anonymous_namespace{abstractoptionstorage.cpp}) | SansDebye (gmx) | UnpackHaloExternal |
| DensityFittingOutputProvider (gmx) | HostAllocatorTestNoMemCopyable (gmx::test) | ModularSimulator (gmx) | Sasa (gmx::analysismodules::anonymous_namespace{sasa.cpp}) | UnsignedInt64Option (gmx) |
| DensityFittingParameters (gmx) | HostInteractionList (gmx) | ModularSimulatorAlgorithm (gmx) | SasaModuleData (gmx::analysismodules::anonymous_namespace{sasa.cpp}) | UnsignedInt64OptionInfo (gmx) |
| DensityFittingSimulationParameterSetup (gmx::anonymous_namespace{densityfitting.cpp}) | HostMemoryTest (gmx::test) | ModularSimulatorAlgorithmBuilder (gmx) | SaxsDebye (gmx) | UnsignedInt64OptionStorage (gmx) |
| DensityFittingTest (gmx::test) |
| ModularSimulatorAlgorithmBuilderHelper (gmx) | ScalarDataTypes (gmx) | UnsignedIntegerOption (gmx) |
| DensitySimilarityCrossCorrelation (gmx::anonymous_namespace{densityfit.cpp}) | ModularSimulatorError (gmx) | ScalingMatrix (gmx) | UnsignedIntegerOptionInfo (gmx) |
| DensitySimilarityInnerProduct (gmx::anonymous_namespace{densityfit.cpp}) | IAnalysisDataModule (gmx) | ModuleHelpTopic (gmx::anonymous_namespace{cmdlinehelpmodule.cpp}) | ScatteringModule (gmx::test::anonymous_namespace{scattering.cpp}) | UnsignedIntegerOptionStorage (gmx) |
| DensitySimilarityMeasure (gmx) | ICheckpointHelperClient (gmx) | AnalysisDataModuleManager::Impl::ModuleInfo (gmx) | ScopedIndenter (gmx) | Update (gmx) |
| DensitySimilarityRelativeEntropy (gmx::anonymous_namespace{densityfit.cpp}) | NbnxmPairlistCpuWork::IClusterData (gmx) | ModuleSelection (gmx::test) | SearchCycleCounting (gmx) | UpdateGroups (gmx) |
| DevelopmentFeatureFlags (gmx) | ICommandLineModule (gmx) | ModuleTest (gmx::test) | SecondaryStructures (gmx::analysismodules::anonymous_namespace{dssp.cpp}) | UpdateGroupsCog (gmx) |
| HardwareTopology::Device (gmx) | ICommandLineOptionsModule (gmx) | MolecularTopologyAtomIndices | SecondaryStructuresData (gmx::analysismodules::anonymous_namespace{dssp.cpp}) | UpdateGroupsTest (gmx::test::anonymous_namespace{updategroups.cpp}) |
| DeviceDetectionResult (gmx) | ICommandLineOptionsModuleSettings (gmx) | MoleculeBlockIndices | Selection (gmx) | UserInputError (gmx) |
| DeviceFloat4 | IdentityFormatter (gmx) | MoleculeData (gmx::analysismodules::anonymous_namespace{msd.cpp}) | SelectionCollection (gmx) | UserInputTest (gmx::test) |
| DeviceInformation | IDomDecHelperClient (gmx) | MoleculeInformation | SelectionData (gmx::internal) |
|
| DeviceInt3 | IEnergyAnalysis (gmx) | MoleculePatch | SelectionEvaluator (gmx) |
| DeviceInt4 | IEnergySignallerClient (gmx) | MoleculePatchDatabase | SelectionFileOption (gmx) | interaction_const_t::VanDerWaalsSettings |
| DeviceStream | AtomPairlist::IEntry (gmx) | MoleculeType | SelectionFileOptionInfo (gmx) | VelocityScalingTemperatureCoupling (gmx) |
| DeviceStreamManager (gmx) | IExceptionInfo (gmx::internal) | MpiComm (gmx) | SelectionFileOptionStorage (gmx) | VirtualSiteTest::VirtualSite (gmx::test::anonymous_namespace{virtualsites.cpp}) |
| DeviceStreamManagerTest (gmx::test::anonymous_namespace{device_stream_manager.cpp}) | IExecutableEnvironment (gmx) | MrcDataStatistics (gmx) | SelectionLocation (gmx) | VirtualSiteTopology::VirtualSiteAngle |
| df_history_t | IFileInputRedirector (gmx) | MrcDensityMapHeader (gmx) | SelectionOption (gmx) | VirtualSiteTopology::VirtualSiteBond |
| DiagonalMasker (gmx) | IFileMatcher (gmx::test) | MrcDensityMapOfFloatFromFileReader (gmx) | SelectionOptionBehavior (gmx) | VirtualSiteConfiguration |
| DiagonalMasker< nR, kernelLayout, KernelLayoutClusterRatio::JSizeEqualsISize > (gmx) | IFileMatcherSettings (gmx::test) | MrcDensityMapOfFloatReader (gmx) | SelectionOptionInfo (gmx) | VirtualSitesHandler (gmx) |
| DiagonalMasker< nR, kernelLayout, KernelLayoutClusterRatio::JSizeIsDoubleISize > (gmx) | IFileOutputRedirector (gmx) | MrcDensityMapOfFloatWriter (gmx) | SelectionOptionManager (gmx) | VirtualSiteTopology |
| DiagonalMasker< nR, kernelLayout, KernelLayoutClusterRatio::JSizeIsHalfISize > (gmx) | IFmmOptions (gmx) | MrcDensitySkewData (gmx) | SelectionOptionStorage (gmx) | VRescaleTemperatureCoupling (gmx) |
| DimParams (gmx) | IForceProvider (gmx) | Msd (gmx::analysismodules) | SelectionParserParameter (gmx) | VsiteAtomMapping |
| DipoleData (gmx) | IFrameConverter (gmx) | MsdData::MsdColumnProxy (gmx::analysismodules::anonymous_namespace{msd.cpp}) | SelectionParserSymbol (gmx) | VsiteBondedInteraction |
| DirectoryEnumerator (gmx) | IHelpExport (gmx::anonymous_namespace{cmdlinehelpmodule.cpp}) | MsdCoordinateManager (gmx::analysismodules::anonymous_namespace{msd.cpp}) | SelectionParserSymbolIterator (gmx) | VsiteBondParameter |
| DistanceCalculationInfo (gmx::anonymous_namespace{domainpaircomm.cpp}) | IHelpTopic (gmx) | MsdData (gmx::analysismodules::anonymous_namespace{msd.cpp}) | SelectionParserSymbolTable (gmx) | VSiteTest (gmx::test::anonymous_namespace{vsite.cpp}) |
| DistancesSquared (gmx::anonymous_namespace{domainpaircomm.cpp}) | IKeyValueTreeTransformRules (gmx) | MsdGroupData (gmx::analysismodules::anonymous_namespace{msd.cpp}) | SelectionParserValue (gmx) | VsiteThread (gmx) |
| AtomDistribution::DomainAtomGroups | ILastStepSignallerClient (gmx) | MsdMatcher (gmx::test::anonymous_namespace{msd.cpp}) | SelectionPosition (gmx) | VsiteTypeAndSign |
| DomainCommBackward (gmx) | ilist_data_t | MtsLevel (gmx) | SelectionOptionManager::Impl::SelectionRequest (gmx) |
|
| DomainCommForward (gmx) | iListInput (gmx::test::anonymous_namespace{bonded.cpp}) | MttkBoxScaling (gmx) | SelectionTopologyProperties (gmx) |
| DomainDecompositionBuilder (gmx) | IListIterator | MttkData (gmx) | SelectionTreeElement (gmx) | wallcc_t |
| DomainInfo (gmx) | IListProxy | MttkElement (gmx) | SelelemTemporaryValueAssigner (anonymous_namespace{evaluate.cpp}) | WarningHandler |
| DomainLifetimeWorkload (gmx) | IListRange | MttkPropagatorConnection (gmx) | SelMethodEvalContext (gmx) | WaterMolecule |
| DomainPairComm (gmx) | ILoggingSignallerClient (gmx) | MttkPropagatorConnectionDetails (gmx) | SeparatePmeRanksPermitted (gmx) | WholeMoleculeTransform (gmx) |
| GridSet::DomainSetup (gmx) | ILogTarget (gmx) | MultiDimArray (gmx) | SetAtoms (gmx) | WithDims (gmx::test::anonymous_namespace{h5md_fixeddataset.cpp}) |
| DomDecHelper (gmx) | IMDEnergyBlock (gmx) | MultiSimTest (gmx::test) | SetAtomsSupportedFiles (gmx::test) | WithFrameDims (gmx::test::anonymous_namespace{h5md_framedataset.cpp}) |
| DomDecHelperBuilder (gmx) | IMDHeader (gmx) |
| SetAtomsTest (gmx::test) | WorkDivision |
| DomdecOptions (gmx) | IMDModule (gmx) | SetAtomsUnSupportedFiles (gmx::test) | WrapperToString (gmx::anonymous_namespace{helpwritercontext.cpp}) |
| DomDecSpecialCasesTest (anonymous_namespace{domain_decomposition.cpp}) | ImdOptions (gmx) | NameOfTestFromTuple (gmx::test) | SetBothTimeTest (gmx::test) | WrapperToVector (gmx::anonymous_namespace{helpwritercontext.cpp}) |
| DomdecZones (gmx) | IMDOutputProvider (gmx) | NBAtomDataGpu (gmx) | SetBox (gmx) | WriteCheckpointDataHolder (gmx) |
| DoubleOption (gmx) | IMdpOptionProvider (gmx) | NbnxmGpu (gmx) | SetForces (gmx) |
|
| DoubleOptionInfo (gmx) | IMDSocket (gmx) | NbnxmKernel (gmx) | SetForceSupportedFiles (gmx::test) |
| DoubleOptionStorage (gmx) | IMessageWriter (gmx::anonymous_namespace{exceptions.cpp}) | NbnxmKernelBenchOptions (gmx) | SetForceUnSupportedFiles (gmx::test) | XdrSerializer (gmx) |
| DsspModuleTest (gmx::test::anonymous_namespace{dssp.cpp}) | Update::Impl | NbnxmKernelPruneOnly (gmx) | SetPrecision (gmx) | XdrSerializerTest (gmx::test::anonymous_namespace{xdr_serializer.cpp}) |
| DsspStorage (gmx::analysismodules::anonymous_namespace{dssp.cpp}) | SwapCoords::Impl | NbnxmKernelTest (gmx::test::anonymous_namespace{kernel_test.cpp}) | SetPrecisionSupportedFiles (gmx::test) | GpuTimers::XFTransfers (gmx) |
| DsspStorageFrame (gmx::analysismodules::anonymous_namespace{dssp.cpp}) | gmx_reverse_top_t::Impl | NbnxmPairlistCpuWork (gmx) | SetPrecisionUnSupportedFiles (gmx::test) | XvgMatch (gmx::test) |
|
| VirtualSitesHandler::Impl (gmx) | nbnxn_atomdata_output_t (gmx) | SetStartTime (gmx) |
|
| UpdateConstrainGpu::Impl (gmx) | nbnxn_atomdata_t (gmx) | SetStartTimeTest (gmx::test) |
| EdrOutputFilename (gmx) | TrajectoryAnalysisSettings::Impl (gmx) | nbnxn_ci_t (gmx) | SetTimeStep (gmx) | ZoneCorners (gmx) |
| | | | |
1.8.5
