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gmx::test::HbondModuleTest Class Reference
+ Inheritance diagram for gmx::test::HbondModuleTest:
+ Collaboration diagram for gmx::test::HbondModuleTest:

Description

Test fixture for the hbond analysis module.

Additional Inherited Members

- Public Member Functions inherited from gmx::test::AbstractTrajectoryAnalysisModuleTestFixture
void setTopology (const char *filename)
 Sets the topology file to use for the test. More...
 
void setTrajectory (const char *filename)
 Sets the trajectory file to use for the test. More...
 
void includeDataset (const char *name)
 Includes only specified dataset for the test. More...
 
void excludeDataset (const char *name)
 Excludes specified dataset from the test. More...
 
void setDatasetTolerance (const char *name, const FloatingPointTolerance &tolerance)
 Sets a custom tolerance for checking a dataset. More...
 
void runTest (const CommandLine &args)
 Runs the analysis module with the given additional options. More...
 
- Public Member Functions inherited from gmx::test::CommandLineTestBase
void setInputFile (const char *option, const char *filename)
 Sets an input file. More...
 
void setInputFile (const char *option, const std::string &filename)
 Sets an input file. More...
 
void setModifiableInputFile (const char *option, const char *filename)
 Sets an input file that may be modified. The file is copied to a temporary file, which is used as the test input. More...
 
void setModifiableInputFile (const char *option, const std::string &filename)
 Sets an input file that may be modified. The file is copied to a temporary file, which is used as the test input. More...
 
void setInputFileContents (const char *option, const char *extension, const std::string &contents)
 Generates and sets an input file. More...
 
void setInputFileContents (const char *option, const char *extension, const ArrayRef< const char *const > &contents)
 Generates and sets an input file. More...
 
std::string setOutputFile (const char *option, const char *filename, const ITextBlockMatcherSettings &matcher)
 Sets an output file whose name is passed via an option and adds it to the set of tested files. More...
 
std::string setOutputFile (const char *option, const char *filename, const IFileMatcherSettings &matcher)
 
std::string setOutputFileWithGeneratedName (const char *filename, const ITextBlockMatcherSettings &matcher)
 Sets an output file whose name is generated by the tool and adds it to the set of tested files. More...
 
std::string setOutputFileWithGeneratedName (std::string &&filename, const ITextBlockMatcherSettings &matcher)
 Sets an output file whose name is generated by the tool and adds it to the set of tested files. More...
 
std::string setOutputFileWithGeneratedName (const char *filename, const IFileMatcherSettings &matcher)
 Sets an output file whose name is generated by the tool and adds it to the set of tested files. More...
 
std::string setOutputFileWithGeneratedName (std::string &&filename, const IFileMatcherSettings &matcher)
 Sets an output file whose name is generated by the tool and adds it to the set of tested files. More...
 
std::string setInputAndOutputFile (const char *option, const char *filename, const ITextBlockMatcherSettings &matcher)
 Sets a file parameter that is used for input and modified as output. The input file is copied to a temporary file that is used as input and can be modified.
 
std::string setInputAndOutputFile (const char *option, const char *filename, const IFileMatcherSettings &matcher)
 Sets a file parameter that is used for input and modified as output. The input file is copied to a temporary file that is used as input and can be modified. More...
 
CommandLinecommandLine ()
 Returns the internal CommandLine object used to construct the command line for the test. More...
 
TestFileManagerfileManager ()
 Returns the internal TestFileManager object used to manage the files. More...
 
TestReferenceChecker rootChecker ()
 Returns the root reference data checker. More...
 
void setDefaultTolerance (const FloatingPointTolerance &tolerance)
 Sets the tolerance for floating-point comparisons. More...
 
void testWriteHelp (ICommandLineModule *module)
 Checks the output of writeHelp() against reference data.
 
void checkOutputFiles ()
 Checks output files added with setOutputFile() against reference data. More...
 
- Protected Member Functions inherited from gmx::test::TrajectoryAnalysisModuleTestFixture< gmx::analysismodules::HbondInfo >
TrajectoryAnalysisModulePointer createModule () override
 Constructs the analysis module to be tested.
 

The documentation for this class was generated from the following file: