gmx::test::anonymous_namespace{dssp.cpp}::DsspModuleTestDsspNB Class Reference

Inheritance diagram for gmx::test::anonymous_namespace{dssp.cpp}::DsspModuleTestDsspNB:

Collaboration diagram for gmx::test::anonymous_namespace{dssp.cpp}::DsspModuleTestDsspNB:

Description

Test fixture for the dssp analysis module.

Additional Inherited Members
Public Member Functions inherited from gmx::test::AbstractTrajectoryAnalysisModuleTestFixture
void	setTopology (const char *filename)
	Sets the topology file to use for the test. More...
void	setTrajectory (const char *filename)
	Sets the trajectory file to use for the test. More...
void	includeDataset (const char *name)
	Includes only specified dataset for the test. More...
void	excludeDataset (const char *name)
	Excludes specified dataset from the test. More...
void	setDatasetTolerance (const char *name, const FloatingPointTolerance &tolerance)
	Sets a custom tolerance for checking a dataset. More...
void	runTest (const CommandLine &args)
	Runs the analysis module with the given additional options. More...
Public Member Functions inherited from gmx::test::CommandLineTestBase
void	setInputFile (const char *option, const char *filename)
	Sets an input file. More...
void	setInputFile (const char *option, const std::string &filename)
	Sets an input file. More...
void	setModifiableInputFile (const char *option, const char *filename)
	Sets an input file that may be modified. The file is copied to a temporary file, which is used as the test input. More...
void	setModifiableInputFile (const char *option, const std::string &filename)
	Sets an input file that may be modified. The file is copied to a temporary file, which is used as the test input. More...
void	setInputFileContents (const char *option, const char *extension, const std::string &contents)
	Generates and sets an input file. More...
void	setInputFileContents (const char *option, const char *extension, const ArrayRef< const char *const > &contents)
	Generates and sets an input file. More...
std::string	setOutputFile (const char *option, const char *filename, const ITextBlockMatcherSettings &matcher)
	Sets an output file whose name is passed via an option and adds it to the set of tested files. More...
std::string	setOutputFile (const char *option, const char *filename, const IFileMatcherSettings &matcher)
std::string	setOutputFileWithGeneratedName (const char *filename, const ITextBlockMatcherSettings &matcher)
	Sets an output file whose name is generated by the tool and adds it to the set of tested files. More...
std::string	setOutputFileWithGeneratedName (std::string &&filename, const ITextBlockMatcherSettings &matcher)
	Sets an output file whose name is generated by the tool and adds it to the set of tested files. More...
std::string	setOutputFileWithGeneratedName (const char *filename, const IFileMatcherSettings &matcher)
	Sets an output file whose name is generated by the tool and adds it to the set of tested files. More...
std::string	setOutputFileWithGeneratedName (std::string &&filename, const IFileMatcherSettings &matcher)
	Sets an output file whose name is generated by the tool and adds it to the set of tested files. More...
std::string	setInputAndOutputFile (const char *option, const char *filename, const ITextBlockMatcherSettings &matcher)
	Sets a file parameter that is used for input and modified as output. The input file is copied to a temporary file that is used as input and can be modified.
std::string	setInputAndOutputFile (const char *option, const char *filename, const IFileMatcherSettings &matcher)
	Sets a file parameter that is used for input and modified as output. The input file is copied to a temporary file that is used as input and can be modified. More...
CommandLine &	commandLine ()
	Returns the internal CommandLine object used to construct the command line for the test. More...
TestFileManager &	fileManager ()
	Returns the internal TestFileManager object used to manage the files. More...
TestReferenceChecker	rootChecker ()
	Returns the root reference data checker. More...
void	setDefaultTolerance (const FloatingPointTolerance &tolerance)
	Sets the tolerance for floating-point comparisons. More...
void	testWriteHelp (ICommandLineModule *module)
	Checks the output of writeHelp() against reference data.
void	checkOutputFiles ()
	Checks output files added with setOutputFile() against reference data. More...
Protected Member Functions inherited from gmx::test::TrajectoryAnalysisModuleTestFixture< gmx::analysismodules::DsspInfo >
TrajectoryAnalysisModulePointer	createModule () override
	Constructs the analysis module to be tested.

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The documentation for this class was generated from the following file:

• src/gromacs/trajectoryanalysis/tests/dssp.cpp