modules Directory Reference

Directory dependency graph for modules:

Files
file	angle.cpp
	Implements gmx::analysismodules::Angle.
file	angle.h
	Declares trajectory analysis module for angle calculations.
file	convert_trj.cpp
	Implements gmx::analysismodules::ConvertTrj.
file	convert_trj.h
	Declares trajectory analysis module for trajectory conversion.
file	distance.cpp
	Implements gmx::analysismodules::Distance.
file	distance.h
	Declares trajectory analysis module for distance calculations.
file	dssp.cpp
	Implements gmx::analysismodules::Dssp.
file	dssp.h
	Declares trajectory analysis module for secondary structure asignment.
file	extract_cluster.cpp
	Implements gmx::analysismodules::ExtractCluster.
file	extract_cluster.h
	Declares trajectory analysis module for extracting frames corresponding to clusters.
file	freevolume.cpp
	Implements gmx::analysismodules::Freevolume.
file	freevolume.h
	Declares trajectory analysis module for free volume calculations.
file	gyrate.cpp
	Implements gmx::analysismodules::Gyrate.
file	gyrate.h
	Declares trajectory analysis module for distance calculations.
file	hbond.cpp
	Implements gmx::analysismodules::Hbond2.
file	hbond.h
	Declares trajectory analysis module for computation and analyzation of hydrogen bonds.
file	isotope.cpp
	Declares helper functions for assigning isotops from atom names.
file	isotope.h
	Declares helper functions for assigning isotops from atom names.
file	msd.cpp
	Defines the trajectory analysis module for mean squared displacement calculations.
file	msd.h
	Declares trajectory analysis module for Mean Squared Displacement calculations.
file	pairdist.cpp
	Implements gmx::analysismodules::PairDistance.
file	pairdist.h
	Declares trajectory analysis module for pairwise distance calculations.
file	rdf.cpp
	Implements gmx::analysismodules::Rdf.
file	rdf.h
	Declares trajectory analysis module for RDF calculations.
file	sasa.cpp
	Implements gmx::analysismodules::Sasa.
file	sasa.h
	Declares trajectory analysis module for surface area calculations.
file	scattering-debye-sans.cpp
	Implements class for SANS Debye Scattering.
file	scattering-debye-sans.h
	Declares class for SANS Debye Scattering.
file	scattering-debye-saxs.cpp
	Implements class for SAXS Debye Scattering.
file	scattering-debye-saxs.h
	Declares class for SAXS Debye Scattering.
file	scattering-debye.cpp
	Implementation of base class for Debye Scattering.
file	scattering-debye.h
	Declares base class for Debye Scattering.
file	scattering.cpp
	Implements gmx::analysismodules::scattering.
file	scattering.h
	Declares trajectory analysis module for small angle scattering calculations.
file	scatteringfactors.cpp
	Implements helper functions for reading structure factors from datafile.
file	scatteringfactors.h
	Declares helper functions for reading structure factors from datafile.
file	select.cpp
	Implements gmx::analysismodules::Select.
file	select.h
	Declares trajectory analysis module for basic selection information.
file	surfacearea.cpp
file	surfacearea.h
file	trajectory.cpp
	Implements gmx::analysismodules::Trajectory.
file	trajectory.h
	Declares trajectory analysis module for basic trajectory information.
file	unionfind.h
	Implements gmx::UnionFinder and gmx::MappedUnionFinder.