|
| DevelopmentFeatureFlags (gmx) | IMDModule (gmx) | NoTextMatch (gmx::test) | SimdDBool (gmx) |
| HardwareTopology::Device (gmx) | IMDOutputProvider (gmx) | NotImplementedError (gmx) | SimdDIBool (gmx) |
| AbstractAnalysisArrayData (gmx) | DeviceInformation | IMdpOptionProvider (gmx) | HardwareTopology::Numa (gmx) | SimdDInt32 (gmx) |
| AbstractAnalysisData (gmx) | DeviceStream | InconsistentInputError (gmx) | HardwareTopology::NumaNode (gmx) | SimdDInt32Tag (gmx) |
| AbstractAverageHistogram (gmx) | DeviceStreamManager (gmx) | IndexGroup | NumericalSplineTableInput (gmx) | SimdDouble (gmx) |
| AbstractCompositeHelpTopic (gmx) | df_history_t | InstallationPrefixInfo (gmx) | NumPmeDomains | SimdDoubleTag (gmx) |
| AbstractOption (gmx) | DiagonalMasker (gmx) | Int64Option (gmx) |
| SimdFBool (gmx) |
| AbstractOptionSection (gmx) | DiagonalMasker< nR, kernelLayout, DiagonalMaskType::JSizeEqualsISize > (gmx) | Int64OptionInfo (gmx) | SimdFIBool (gmx) |
| AbstractOptionSectionHandle (gmx) | DiagonalMasker< nR, kernelLayout, DiagonalMaskType::JSizeIsDoubleISize > (gmx) | IntegerOption (gmx) | ObservablesHistory | SimdFInt32 (gmx) |
| AbstractOptionStorage (gmx) | DiagonalMasker< nR, kernelLayout, DiagonalMaskType::JSizeIsHalfISize > (gmx) | IntegerOptionInfo (gmx) | ObservablesReducer (gmx) | SimdFInt32Tag (gmx) |
| AbstractPlotModule (gmx) | Grid::Dimensions (Nbnxm) | InteractionListHandle | ObservablesReducerBuilder (gmx) | SimdFloat (gmx) |
| AbstractSimpleHelpTopic (gmx) | DirectoryEnumerator (gmx) | InteractionOfType | OpenClTraits (gmx) | SimdFloatTag (gmx) |
| accessor_basic (gmx) | DomainDecompositionBuilder (gmx) | InteractionsOfType | OpenClTraits< cl_command_queue > (gmx) | SimdSetZeroProxy (gmx) |
| AffineTransformation (gmx) | DomainLifetimeWorkload (gmx) | InteractiveMD (gmx) | OpenClTraits< cl_context > (gmx) | SimdTraits (gmx::internal) |
| KeyValueTreeTransformRuleBuilder::AfterFrom (gmx) | DomdecOptions (gmx) | InteractiveTestHelper (gmx::test) | OpenClTraits< cl_kernel > (gmx) | SimpleHelpTopic (gmx) |
| AlignedAllocationPolicy (gmx) | DoubleOption (gmx) | InternalError (gmx) | OpenClTraits< cl_program > (gmx) | SimulationAlgorithmSetupError (gmx) |
| AlignedArray< double, N > (gmx) | DoubleOptionInfo (gmx) | InvalidInputError (gmx) | OpenClTraitsBase (gmx) | SimulationContext (gmx) |
| AlignedArray< float, N > (gmx) |
| IonSwapping (gmx) | OptionInfo (gmx) | SimulationGroups |
| Allocator (gmx) | IOptionManager (gmx) | OptionManagerContainer (gmx) | SimulationInputHandle |
| AllocatorTest (gmx::test) | ekinstate_t | IOptionsBehavior (gmx) | Options (gmx) | SimulationInstabilityError (gmx) |
| AmdPackedFloat3 | ElementNotFoundError (gmx) | IOptionsContainer (gmx) | OptionsAssigner (gmx) | SimulationParticle |
| AnalysisArrayData (gmx) | EnergyCalculationFrequencyErrors (gmx) | IOptionsContainerWithSections (gmx) | OptionsBehaviorCollection (gmx) | SimulationSignal (gmx) |
| AnalysisData (gmx) | EnergyFunctionProperties (Nbnxm) | IOutputAdapter (gmx) | OptionSection (gmx) | SimulationSignaller (gmx) |
| AnalysisDataAverageModule (gmx) | gmx_ga2la_t::Entry | IProgramContext (gmx) | OptionSectionHandle (gmx) | SimulationTimeStep (gmx) |
| AnalysisDataBinAverageModule (gmx) | EnumerationArray (gmx) | IRestraintPotential (gmx) | OptionsIterator (gmx) | SimulationWorkload (gmx) |
| AnalysisDataDisplacementModule (gmx) | EnumerationIterator (gmx) | ISerializer (gmx) | OptionsModifyingIterator (gmx) | SimulatorBuilder (gmx) |
| AnalysisDataFrameAverageModule (gmx) | EnumerationWrapper (gmx) | isIntegralConstant (gmx) | OptionsModifyingTypeVisitor (gmx) | SimulatorConfig (gmx) |
| AnalysisDataFrameHeader (gmx) | EnumOption (gmx) | IsSerializableEnum (gmx) | OptionsModifyingVisitor (gmx) | SimulatorEnv (gmx) |
| AnalysisDataFrameRef (gmx) | EnumOptionInfo (gmx) | Range::iterator (gmx) | OptionStorageTemplate (gmx) | SimulatorStateData (gmx) |
| AnalysisDataHandle (gmx) | EqualCaseInsensitive (gmx) | ITextBlockMatcher (gmx::test) | OptionStorageTemplateSimple (gmx) | Site (gmx) |
| AnalysisDataLifetimeModule (gmx) | EwaldBoxZScaler | ITextBlockMatcherSettings (gmx::test) | OptionsTypeVisitor (gmx) | StandardInputStream (gmx) |
| AnalysisDataModuleManager (gmx) | ExactTextMatch (gmx::test) | ITopologyProvider (gmx) | OptionsVisitor (gmx) | StaticLog2 (gmx) |
| AnalysisDataModuleParallel (gmx) | ExceptionInfo (gmx) |
| OptionTemplate (gmx) | StaticLog2< 0 > (gmx) |
| AnalysisDataModuleSerial (gmx) | ExceptionInitializer (gmx) | OptionValueConverterSimple (gmx) | StaticLog2< 1 > (gmx) |
| AnalysisDataParallelOptions (gmx) | ExclusionBlock (gmx) | JClusterList | OutputAdapterContainer (gmx) | StdioTestHelper (gmx::test) |
| AnalysisDataPlotModule (gmx) | ExponentialDistribution (gmx) |
| OutputRequirementOptionDirector (gmx) | StepWorkload (gmx) |
| AnalysisDataPlotSettings (gmx) | ExponentialMovingAverage (gmx) | OutputRequirements (gmx) | StopConditionSignal (gmx) |
| AnalysisDataPointSetRef (gmx) | ExponentialMovingAverageState (gmx) | KeyValueTreeBuilder (gmx) | OutputSelector (gmx) | StopConditionTime (gmx) |
| AnalysisDataSimpleHistogramModule (gmx) | extents (gmx) | KeyValueTreeObjectArrayBuilder (gmx) | OutputSelectorDeathTest (gmx::test) | StopHandler (gmx) |
| AnalysisDataStorage (gmx) | extents_analyse< 0 > (gmx::detail) | KeyValueTreeObjectBuilder (gmx) |
| StopHandlerBuilder (gmx) |
| AnalysisDataStorageFrame (gmx) | extents_analyse< R, dynamic_extent, StaticExtents...> (gmx::detail) | KeyValueTreePath (gmx) | StringCompare (gmx) |
| AnalysisDataTestFixture (gmx::test) | extents_analyse< R, E0, StaticExtents...> (gmx::detail) | KeyValueTreeTransformRuleBuilder (gmx) | HardwareTopology::Package (gmx) | StringFormatter (gmx) |
| AnalysisDataTestInput (gmx::test) |
| KeyValueTreeTransformRulesScoped (gmx) | PackedJClusterList | StringInputStream (gmx) |
| AnalysisDataTestInputFrame (gmx::test) | KeyValueTreeUniformArrayBuilder (gmx) | PaddedVector (gmx) | StringOption (gmx) |
| AnalysisDataTestInputPointSet (gmx::test) | FEPStateValue | KeyValueTreeValueBuilder (gmx) | PaddingTraits (gmx::detail) | StringOptionInfo (gmx) |
| AnalysisDataValue (gmx) | FileIOError (gmx) |
| PageAlignedAllocationPolicy (gmx) | StringOutputStream (gmx) |
| AnalysisDataVectorPlotModule (gmx) | FileNameOption (gmx) | PairlistSets | StringTable |
| AnalysisDataWeightedHistogramModule (gmx) | FileNameOptionInfo (gmx) | layout_right (gmx) | PairSearch | StringTableBuilder |
| AnalysisHistogramSettings (gmx) | FileNameOptionManager (gmx) | LegacyEnumOption (gmx) | PairsearchWork | StringTableEntry |
| AnalysisHistogramSettingsInitializer (gmx) | FilteringExactTextMatch (gmx::test) | LegacyInput (gmx) | ParallelConsistencyError (gmx) | StringTestBase (gmx::test) |
| AnalysisNeighborhood (gmx) | FixedCapacityVector (gmx) | LegacyMdrunOptions (gmx) | UniformRealDistribution::param_type (gmx) | StringToEnumValueConverter (gmx) |
| AnalysisNeighborhoodPair (gmx) | FlagsTemplate (gmx) | LennardJonesCalculator (gmx) | UniformIntDistribution::param_type (gmx) |
|
| AnalysisNeighborhoodPairSearch (gmx) | FlagTest (gmx::test) | LennardJonesCalculator< calculateEnergies, InteractionModifiers::ForceSwitch > (gmx) | TabulatedNormalDistribution::param_type (gmx) |
| AnalysisNeighborhoodPositions (gmx) | FloatingPointDifference (gmx::test) | LennardJonesCalculator< calculateEnergies, InteractionModifiers::PotSwitch > (gmx) | NormalDistribution::param_type (gmx) | t_filenm |
| AnalysisNeighborhoodSearch (gmx) | FloatingPointTolerance (gmx::test) | LennardJonesCalculator< false, InteractionModifiers::PotShift > (gmx) | GammaDistribution::param_type (gmx) | t_mapping |
| AnalyticalSplineTableInput (gmx) | FloatOption (gmx) | LennardJonesCalculator< true, InteractionModifiers::PotShift > (gmx) | ExponentialDistribution::param_type (gmx) | t_matrix |
| Any (gmx) | FloatOptionInfo (gmx) | ListedForces | PartialDeserializedTprFile | t_mdatoms |
| AnyOutputSupportedFiles (gmx::test) | ForceBuffers (gmx) | ListOfLists (gmx) | PbcAiuc | t_oriresdata |
| APIError (gmx) | ForceBuffersView (gmx) | LocalAtomSet (gmx) | PdbAtomEntry | t_pargs |
| ArrayRef (gmx) | ForceHelperBuffers | LocalAtomSetManager (gmx) | PhysicalNodeCommunicator (gmx) | t_pbc |
| ArrayRefWithPadding (gmx) | ForceOutputs (gmx) | LocalSettleData | PmeForceSenderGpu (gmx) | t_state |
| AtomIterator | ForceProviderInput (gmx) | LocalTopologyChecker (gmx) | PmeGpuProgram | t_symbuf |
| AtomPair (gmx) | ForceProviderOutput (gmx) | LogEntryWriter (gmx) | PmePpCommGpu (gmx) | t_xpmelmt |
| AtomProperties | ForceProviders (gmx) | LoggerBuilder (gmx) | GaussianSpreadKernelParameters::PositionAndAmplitude (gmx) | TabulatedNormalDistribution (gmx) |
| AtomProxy | ForceWithShiftForces (gmx) | LoggerOwner (gmx) | PotentialPointData (gmx) | TestException (gmx::test) |
| AtomRange | ForceWithVirial (gmx) | LoggerTestHelper (gmx::test) | PpRanks | TestFileInputRedirector (gmx::test) |
| AtomsAdjacencyListElement | ForeignLambdaTerms | HardwareTopology::LogicalProcessor (gmx) | PreprocessingAtomTypes | TestFileManager (gmx::test) |
| Awh (gmx) |
| CpuInfo::LogicalProcessor (gmx) | PreprocessingBondAtomType | TestFileOutputRedirector (gmx::test) |
|
| LogLevelHelper (gmx) | PreprocessResidue | TestOptionsProvider (gmx::test) |
| GammaDistribution (gmx) |
| ProcessFrameConversion (gmx) | TestReferenceChecker (gmx::test) |
| BalanceRegion | GaussianSpreadKernelParameters (gmx) | HardwareTopology::ProcessingUnit (gmx) | TestReferenceData (gmx::test) |
| basic_mdspan (gmx) | GaussTransform3D (gmx) | HardwareTopology::Machine (gmx) | Profiling (gmx) | TextFileMatch (gmx::test) |
| BasicVector (gmx) | GlobalCommandLineHelpContext (gmx) | MappedUnionFinder (gmx) | PullCoordExpressionParser (gmx) | TextInputFile (gmx) |
| BenchmarkSystem (gmx) | gmx_ana_index_t | layout_right::mapping (gmx) |
| TextInputStream (gmx) |
| BinaryInformationSettings (gmx) | gmx_ana_indexmap_t | MDAtoms (gmx) | TextLineWrapper (gmx) |
| BondedInteraction | gmx_ana_pos_t | MDLogger (gmx) | QMInputFileName (gmx) | TextLineWrapperSettings (gmx) |
| BondedInteractionList | gmx_cache_protect_t | MDModules (gmx) | QuadraticSplineTable (gmx) | TextOutputFile (gmx) |
| BooleanOption (gmx) | gmx_domdec_constraints_t | MDModulesCheckpointReadingBroadcast (gmx) |
| TextOutputStream (gmx) |
| BooleanOptionInfo (gmx) | gmx_enerdata_t | MDModulesCheckpointReadingDataOnMain (gmx) | TextReader (gmx) |
| BoolType (gmx) | gmx_ffparams_t | MDModulesEnergyOutputToDensityFittingRequestChecker (gmx) | Range (gmx) | TextTableFormatter (gmx) |
| BoxDeformationHandle (gmx) | gmx_ga2la_t | MDModulesEnergyOutputToQMMMRequestChecker (gmx) | RangeError (gmx) | TextWriter (gmx) |
| BuildMDModulesNotifier< CurrentCallParameter, CallParameter...> (gmx) | gmx_localtop_t | MDModulesNotifier (gmx) | RangePartitioning (gmx) | ThreeFry2x64 (gmx) |
|
| gmx_molblock_t | MDModulesNotifiers (gmx) | ReadCheckpointDataHolder (gmx) | ThreeFry2x64Fast (gmx) |
| gmx_moltype_t | MDModulesWriteCheckpointData (gmx) | RepeatingOptionSection (gmx) | ThreeFry2x64General (gmx) |
| HardwareTopology::Cache (gmx) | gmx_multisim_t | MdRunInputFilename (gmx) | RepeatingOptionSectionHandle (gmx) | TimeUnitBehavior (gmx) |
| CheckpointData (gmx) | gmx_nodecomm_t | Mdrunner (gmx) | ReplicaExchangeParameters | TimeUnitManager (gmx) |
| CheckpointError (gmx) | gmx_sparsematrix | MdrunnerBuilder (gmx) | ResetHandler (gmx) | ToleranceError (gmx) |
| CheckpointHandler (gmx) | GpuHaloExchange (gmx) | MembedHolder (gmx) | RestraintManager (gmx) | KeyValueTreeTransformRuleBuilder::ToObject (gmx) |
| CheckpointHeaderContents | GpuRegionTimerImpl | MessageStringCollector (gmx) | RestraintMDModule (gmx) | TopologyData (gmx) |
| ClfftInitializer (gmx) | GpuRegionTimerWrapper | MessageStringContext (gmx) |
| TopologyInformation (gmx) |
| ClHandle (gmx) | GpuTaskAssignments (gmx) | MissingElementConnectionError (gmx) | KeyValueTreeTransformRuleBuilder::ToValue (gmx) |
| CommandLine (gmx::test) | GpuTaskAssignmentsBuilder (gmx) | ModularSimulator (gmx) | Selection (gmx) | TprAndFileManager (gmx::test) |
| CommandLineHelpContext (gmx) | GpuTaskMapping (gmx) | ModularSimulatorError (gmx) | SelectionCollection (gmx) | TpxFileHeader |
| CommandLineHelpWriter (gmx) | GromacsException (gmx) | ModuleSelection (gmx::test) | SelectionFileOption (gmx) | TrajectoryAnalysisCommandLineRunner (gmx) |
| CommandLineModuleGroup (gmx) | GromppMtsOpts (gmx) | ModuleTest (gmx::test) | SelectionFileOptionInfo (gmx) | TrajectoryAnalysisModule (gmx) |
| CommandLineModuleManager (gmx) |
| MoleculeBlockIndices | SelectionOption (gmx) | TrajectoryAnalysisModuleData (gmx) |
| CommandLineModuleSettings (gmx) | MoleculeInformation | SelectionOptionBehavior (gmx) | TrajectoryAnalysisSettings (gmx) |
| CommandLineParser (gmx) | HardwareTopology (gmx) | MoleculePatch | SelectionOptionInfo (gmx) | TrajectoryFileOpener (gmx) |
| CommandLineProgramContext (gmx) | HashedMap (gmx) | MoleculePatchDatabase | SelectionOptionManager (gmx) | TrajectoryFrameWriter (gmx) |
| CommandLineTestBase (gmx::test) | HelpLinks (gmx) | MrcDataStatistics (gmx) | SelectionPosition (gmx) | TranslateAndScale (gmx) |
| CommandLineTestHelper (gmx::test) | HelpManager (gmx) | MrcDensityMapHeader (gmx) | SelectionTopologyProperties (gmx) |
|
| CompositeHelpTopic (gmx) | HelpWriterContext (gmx) | MrcDensityMapOfFloatFromFileReader (gmx) | SeparatePmeRanksPermitted (gmx) |
| ConfMatch (gmx::test) | history_t | MrcDensityMapOfFloatReader (gmx) | SetAtoms (gmx) | UniformIntDistribution (gmx) |
| Constraints (gmx) | HostAllocationPolicy (gmx) | MrcDensityMapOfFloatWriter (gmx) | SetAtomsSupportedFiles (gmx::test) | UniformRealDistribution (gmx) |
| ConstraintsParam (gmx) |
| MrcDensitySkewData (gmx) | SetAtomsUnSupportedFiles (gmx::test) | UnionFinder (gmx) |
| ConvertTprInfo (gmx) | MtsLevel (gmx) | SetBox (gmx) | Update (gmx) |
| CoordinatesAndBoxPreprocessed (gmx) | IAnalysisDataModule (gmx) | MultiDimArray (gmx) | SetForces (gmx) | UpdateGroups (gmx) |
| HardwareTopology::Core (gmx) | NbnxnPairlistCpuWork::IClusterData |
| SetForceSupportedFiles (gmx::test) | UpdateGroupsCog (gmx) |
| CoulombCalculator (gmx) | ICommandLineModule (gmx) | SetForceUnSupportedFiles (gmx::test) | UserInputError (gmx) |
| CoulombCalculator< KernelCoulombType::EwaldAnalytical > (gmx) | ICommandLineOptionsModule (gmx) | NbnxmKernel | SetPrecision (gmx) |
|
| CoulombCalculator< KernelCoulombType::EwaldTabulated > (gmx) | ICommandLineOptionsModuleSettings (gmx) | nbnxn_cj_packed_t | SetPrecisionSupportedFiles (gmx::test) |
| CoulombCalculator< KernelCoulombType::RF > (gmx) | IdentityFormatter (gmx) | nbnxn_cj_t | SetPrecisionUnSupportedFiles (gmx::test) | VirtualSitesHandler (gmx) |
| CpuInfo (gmx) | IExecutableEnvironment (gmx) | nbnxn_cycle_t | SetStartTime (gmx) |
|
| CrystallographicLabels (gmx) | IFileInputRedirector (gmx) | nbnxn_excl_t | SetTimeStep (gmx) |
| CubicSplineTable (gmx) | IFileMatcher (gmx::test) | nbnxn_im_ei_t | SettleData (gmx) | WarningHandler |
|
| IFileMatcherSettings (gmx::test) | nbnxn_sci | SettleWaterTopology | WaterMolecule |
| IFileOutputRedirector (gmx) | NbnxnPairlistCpu | SetVelocities (gmx) | WholeMoleculeTransform (gmx) |
| DataFileFinder (gmx) | IForceProvider (gmx) | NbnxnPairlistCpuWork | SetVelocitySupportedFiles (gmx::test) | WriteCheckpointDataHolder (gmx) |
| DataFileInfo (gmx) | IFrameConverter (gmx) | no_delete (gmx) | SetVelocityUnSupportedFiles (gmx::test) |
|
| DataFileOptions (gmx) | IHelpTopic (gmx) | NoContentsMatch (gmx::test) | shakedata (gmx) |
| DDBalanceRegionHandler | IKeyValueTreeTransformRules (gmx) | nonbonded_verlet_t | GaussianSpreadKernelParameters::Shape (gmx) | XvgMatch (gmx::test) |
| DefaultInitializationAllocator (gmx) | IListIterator | NonbondedBenchmarkInfo (gmx) | Simd4DBool (gmx) | |
| DensityFittingForce (gmx) | IListProxy | NoOptionalOutput (gmx::test) | Simd4Double (gmx) | |
| DensityFittingModuleInfo (gmx) | IListRange | NormalDistribution (gmx) | Simd4FBool (gmx) | |
| DensitySimilarityMeasure (gmx) | ILogTarget (gmx) | not_null (gmx::compat) | Simd4Float (gmx) | |
| | | | |
1.8.5
