Here is a list of all documented class members with links to the class documentation for each member:

- d -

• data : gmx_sparsematrix , gmx::PaddedVector< T, Allocator > , gmx::FixedCapacityVector< typename, size_t > , gmx::EnumerationArray< EnumType, DataType, ArraySize > , gmx::FixedCapacityVector< typename, size_t > , gmx::basic_mdspan< ElementType, Extents, LayoutPolicy, AccessorPolicy > , gmx::ArrayRef< typename > , gmx::EnumerationArray< EnumType, DataType, ArraySize >
• DataFileFinder : gmx::DataFileOptions , gmx::DataFileFinder
• DataFileInfo() : gmx::DataFileInfo
• DataFileOptions() : gmx::DataFileOptions
• dataFinished() : gmx::AnalysisDataAverageModule , gmx::AnalysisDataFrameAverageModule , gmx::AnalysisDataDisplacementModule , gmx::AnalysisDataSimpleHistogramModule , gmx::AnalysisDataWeightedHistogramModule , gmx::AnalysisDataBinAverageModule , gmx::AnalysisDataLifetimeModule , gmx::AbstractPlotModule , gmx::IAnalysisDataModule , gmx::AnalysisDataModuleSerial , gmx::AnalysisDataModuleParallel
• dataHandle() : gmx::TrajectoryAnalysisModuleData
• dataMode_ : gmx::MrcDensityMapHeader
• DataProperty : gmx::AnalysisDataModuleManager
• dataPropertyAboutToChange() : gmx::AnalysisDataModuleManager
• datasetCount() : gmx::TrajectoryAnalysisModule
• dataSetCount() : gmx::test::AnalysisDataTestInput , gmx::AbstractAnalysisData
• datasetFromIndex() : gmx::TrajectoryAnalysisModule
• datasetFromName() : gmx::TrajectoryAnalysisModule
• dataSetIndex() : gmx::test::AnalysisDataTestInputPointSet , gmx::AnalysisDataPointSetRef
• datasetNames() : gmx::TrajectoryAnalysisModule
• dataStarted() : gmx::IAnalysisDataModule , gmx::AnalysisDataModuleSerial , gmx::AnalysisDataAverageModule , gmx::AnalysisDataFrameAverageModule , gmx::AnalysisDataDisplacementModule , gmx::AnalysisDataBinAverageModule , gmx::AnalysisDataLifetimeModule , gmx::AbstractPlotModule
• dataStatistics_ : gmx::MrcDensityMapHeader
• dd_nc : CheckpointHeaderContents
• DDBalanceRegionHandler() : DDBalanceRegionHandler
• ddBondedChecking : gmx::DomdecOptions
• ddp_count : t_state
• ddp_count_cg_gl : t_state
• deallocate() : gmx::Allocator< T, AllocationPolicy >
• debug : gmx::MDLogger
• decay() : gmx::accessor_basic< ElementType >
• decideIfCheckpointingThisStep() : gmx::CheckpointHandler
• defaultBasename() : gmx::FileNameOption
• defaultEnumIndex() : gmx::StringOption
• defaultExtension() : gmx::FileNameOptionInfo
• defaultFloatTolerance() : gmx::test::FloatingPointTolerance
• defaultNiceLevel() : gmx::CommandLineModuleSettings
• defaultRealTolerance() : gmx::test::FloatingPointTolerance
• defaultSelectionText() : gmx::SelectionOption
• defaultTolerance : gmx::CubicSplineTable , gmx::QuadraticSplineTable
• defaultType() : gmx::FileNameOption
• defaultValue() : gmx::OptionTemplate< T, U > , gmx::BooleanOptionInfo
• defaultValueIfSet() : gmx::OptionTemplate< T, U >
• defaultValueIfSetExists() : gmx::AbstractOptionStorage
• defaultValues() : gmx::AbstractOptionStorage , gmx::OptionStorageTemplate< T > , gmx::OptionInfo
• defaultValuesAsStrings() : gmx::AbstractOptionStorage , gmx::OptionStorageTemplate< T > , gmx::OptionInfo
• deform : gmx::BoxDeformationHandle , gmx::Update
• dekindl : ekinstate_t
• delta : gmx::shakedata
• delta_t : gmx::SimulationTimeStep
• deltaH() : ForeignLambdaTerms
• density : gmx::DensitySimilarityMeasure
• densityDataCopy() : gmx::MrcDensityMapOfFloatFromFileReader
• DensityFittingForce() : gmx::DensityFittingForce
• DensitySimilarityMeasure() : gmx::DensitySimilarityMeasure
• derivative : gmx::AnalyticalSplineTableInput , gmx::NumericalSplineTableInput
• desc : gmx::NumericalSplineTableInput , t_pargs , t_mapping , gmx::AnalyticalSplineTableInput
• description() : gmx::AbstractOptionStorage , gmx::OptionTemplate< T, U >
• deserialize() : gmx::ReadCheckpointDataHolder
• detect() : gmx::CpuInfo , gmx::HardwareTopology
• dev : gmx::HardwareTopology::Device
• deviceId : gmx::HardwareTopology::Device
• deviceId_ : gmx::GpuTaskMapping
• deviceIdsAssigned() : gmx::GpuTaskAssignments
• deviceInfo() : gmx::DeviceStreamManager
• devices : gmx::HardwareTopology::Machine
• DeviceStream() : DeviceStream
• DeviceStreamManager() : gmx::DeviceStreamManager
• deviceVendor : DeviceInformation
• dfhist : t_state
• dHH : SettleWaterTopology
• didOutput() : gmx::TextTableFormatter
• difference_type : gmx::basic_mdspan< ElementType, Extents, LayoutPolicy, AccessorPolicy > , gmx::FixedCapacityVector< typename, size_t > , gmx::ArrayRef< typename >
• Dihedrals : ListedForces
• dim : t_pbc
• dir_ : gmx::DataFileInfo
• DirectoryEnumerator() : gmx::DirectoryEnumerator
• disableInputOptionChecking() : gmx::FileNameOptionManager
• disablePmeRanks() : gmx::SeparatePmeRanksPermitted
• disableUnusedEntriesCheck() : gmx::test::TestReferenceChecker
• discard() : gmx::ThreeFry2x64General< rounds, internalCounterBits >
• dispatchFreeEnergyKernels() : nonbonded_verlet_t
• dispatchNonbondedKernel() : nonbonded_verlet_t
• dispatchPruneKernel() : PairlistSets
• dispatchPruneKernelCpu() : nonbonded_verlet_t
• dispatchPruneKernelGpu() : nonbonded_verlet_t
• displayName() : gmx::CommandLineProgramContext , gmx::IProgramContext
• disre_initf : history_t
• disre_rm3tav : history_t
• distance2() : gmx::AnalysisNeighborhoodPair
• distance_squared_tolerance : gmx::shakedata
• distribution_type : gmx::GammaDistribution< RealType >::param_type , gmx::TabulatedNormalDistribution< RealType, tableBits >::param_type , gmx::UniformRealDistribution< RealType >::param_type , gmx::UniformIntDistribution< IntType >::param_type , gmx::ExponentialDistribution< RealType >::param_type , gmx::NormalDistribution< RealType >::param_type
• dlbOption : gmx::DomdecOptions
• dlbScaling : gmx::DomdecOptions
• doBool() : gmx::ISerializer
• doBoolArray() : gmx::ISerializer
• doCheckpoint() : df_history_t , ekinstate_t
• doEnumArrayAsInt() : gmx::ISerializer
• doEnumAsInt() : gmx::ISerializer
• dOH : SettleWaterTopology
• domain : gmx::HardwareTopology::Device
• DomainDecompositionBuilder() : gmx::DomainDecompositionBuilder
• domdecOptions : gmx::LegacyMdrunOptions
• doMembed() : gmx::MembedHolder
• done() : gmx::AbstractAverageHistogram
• doNeighborSearch : gmx::StepWorkload
• dot() : gmx::BasicVector< ValueType >
• double_prec : CheckpointHeaderContents
• DoubleOption() : gmx::DoubleOption
• DoubleOptionInfo() : gmx::DoubleOptionInfo
• DoubleOptionStorage : gmx::DoubleOption
• DTensors : t_oriresdata
• DTensorsEnsembleAv : t_oriresdata
• DTensorsTimeAndEnsembleAv : t_oriresdata
• DTensorsTimeAveragedHistory() : t_oriresdata
• dummy : gmx_cache_protect_t
• dummySelection_ : gmx::test::ModuleTest
• dummyTopology_ : gmx::test::ModuleTest
• dump() : gmx::ReadCheckpointDataHolder
• dvdl_lin : gmx_enerdata_t
• dvdl_nonlin : gmx_enerdata_t
• dx() : gmx::AnalysisDataPointSetRef , gmx::test::AnalysisDataTestInputFrame , gmx::AnalysisNeighborhoodPair , gmx::AnalysisDataFrameRef , gmx::AnalysisDataFrameHeader
• dy() : gmx::AnalysisDataFrameRef , gmx::AnalysisDataPointSetRef
• dynamicMask() : gmx::SelectionOption