- p -
- packCoordinateSendBuffer()
: gmx::DomainCommBackward
- paddedArrayRef()
: gmx::ArrayRefWithPadding< typename >
- paddedConstArrayRef()
: gmx::ArrayRefWithPadding< typename >
- paddedSize()
: gmx::PaddedVector< T, Allocator >
- PaddedVector()
: gmx::PaddedVector< T, Allocator >
- pairlistInnerRadius()
: gmx::nonbonded_verlet_t
- pairlistIsSimple()
: gmx::nonbonded_verlet_t
- pairlistOuterRadius()
: gmx::nonbonded_verlet_t
- pairlistSet()
: gmx::PairlistSets
- pairlistSets()
: gmx::nonbonded_verlet_t
- PairlistSets()
: gmx::PairlistSets
- PairSearch()
: gmx::PairSearch
- paragraphBreak()
: gmx::HelpWriterContext
- ParallelConsistencyError()
: gmx::ParallelConsistencyError
- parallelDataStarted()
: gmx::IAnalysisDataModule
, gmx::AnalysisDataModuleParallel
, gmx::AnalysisDataSimpleHistogramModule
, gmx::AnalysisDataWeightedHistogramModule
- parallelizationFactor()
: gmx::AnalysisDataParallelOptions
- parallelSelection()
: gmx::TrajectoryAnalysisModuleData
- parallelSelections()
: gmx::TrajectoryAnalysisModuleData
- param()
: gmx::UniformIntDistribution< IntType >
, gmx::UniformRealDistribution< RealType >
, gmx::ExponentialDistribution< RealType >
, gmx::GammaDistribution< RealType >
, gmx::NormalDistribution< RealType >
, gmx::TabulatedNormalDistribution< RealType, tableBits >
- param_type()
: gmx::ExponentialDistribution< RealType >::param_type
, gmx::GammaDistribution< RealType >::param_type
, gmx::NormalDistribution< RealType >::param_type
, gmx::TabulatedNormalDistribution< RealType, tableBits >::param_type
, gmx::UniformIntDistribution< IntType >::param_type
, gmx::UniformRealDistribution< RealType >::param_type
- parametersAllMasses1()
: gmx::SettleData
- parametersMassWeighted()
: gmx::SettleData
- params()
: gmx::PairlistSets
- parse()
: gmx::CommandLineParser
- parseFromFile()
: gmx::SelectionCollection
- parseFromStdin()
: gmx::SelectionCollection
- parseFromString()
: gmx::SelectionCollection
- parseInteractive()
: gmx::SelectionCollection
- parseRequestedFromFile()
: gmx::SelectionOptionManager
- parseRequestedFromStdin()
: gmx::SelectionOptionManager
- parseRequestedFromString()
: gmx::SelectionOptionManager
- partialCleanUp()
: MoleculeInformation
- particleName()
: SimulationParticle
- particleTypeNameA()
: SimulationParticle
- particleTypeNameB()
: SimulationParticle
- pbcType()
: gmx::TopologyInformation
- PdbAtomEntry()
: PdbAtomEntry
- permitSeparatePmeRanks()
: gmx::SeparatePmeRanksPermitted
- PhysicalNodeCommunicator()
: gmx::PhysicalNodeCommunicator
- pinningPolicy()
: gmx::HostAllocationPolicy
, gmx::ForceBuffers
- plotFormat()
: gmx::AnalysisDataPlotSettings
- plotSettings()
: gmx::TrajectoryAnalysisSettings
- PmeForceSenderGpu()
: gmx::PmeForceSenderGpu
- PmeGpuProgram()
: PmeGpuProgram
- PmePpCommGpu()
: gmx::PmePpCommGpu
- PmeSolve()
: PmeSolve
- pointsAdded()
: gmx::IAnalysisDataModule
, gmx::AnalysisDataModuleSerial
, gmx::AnalysisDataModuleParallel
, gmx::AnalysisDataAverageModule
, gmx::AnalysisDataFrameAverageModule
, gmx::AnalysisDataDisplacementModule
, gmx::AnalysisDataSimpleHistogramModule
, gmx::AnalysisDataWeightedHistogramModule
, gmx::AnalysisDataBinAverageModule
, gmx::AnalysisDataLifetimeModule
, gmx::AbstractPlotModule
, gmx::AnalysisDataPlotModule
, gmx::AnalysisDataVectorPlotModule
- pointSet()
: gmx::test::AnalysisDataTestInputFrame
, gmx::AnalysisDataFrameRef
- pointSetCount()
: gmx::test::AnalysisDataTestInputFrame
, gmx::AnalysisDataFrameRef
- pop_back()
: gmx::KeyValueTreePath
, gmx::FixedCapacityVector< typename, size_t >
- pop_last()
: gmx::KeyValueTreePath
- popIEntryWhenEmpty()
: t_nblist
- posCount()
: gmx::Selection
- position()
: gmx::Selection
- PotentialPointData()
: gmx::PotentialPointData
- prepareAndTransformCoordinates()
: gmx::ProcessFrameConversion
- prepareAndWriteFrame()
: gmx::TrajectoryFrameWriter
- prepareAtomPositions()
: gmx::INNPotModel
, gmx::TorchModel
- prepareTest()
: gmx::test::SetPrecisionSupportedFiles
, gmx::test::SetAtomsSupportedFiles
, gmx::test::AnyOutputSupportedFiles
, gmx::test::NoOptionalOutput
, gmx::test::OutputSelectorDeathTest
, gmx::test::SetVelocitySupportedFiles
, gmx::test::SetVelocityUnSupportedFiles
, gmx::test::SetForceSupportedFiles
, gmx::test::SetForceUnSupportedFiles
, gmx::test::SetPrecisionUnSupportedFiles
, gmx::test::SetAtomsUnSupportedFiles
- prependContext()
: gmx::GromacsException
- preprocess()
: gmx::NNPotTopologyPreprocessor
- PreprocessingAtomTypes()
: PreprocessingAtomTypes
- present()
: gmx::AnalysisDataFrameRef
, gmx::test::AnalysisDataTestInputPointSet
, gmx::AnalysisDataPointSetRef
- presentAllData()
: gmx::test::AnalysisDataTestFixture
- presentDataFrame()
: gmx::test::AnalysisDataTestFixture
- printDebugInfo()
: gmx::Selection
- printInfo()
: gmx::Selection
- printStringTableStorageToFile()
: StringTable
- printTree()
: gmx::SelectionCollection
- printXvgrInfo()
: gmx::SelectionCollection
- process()
: gmx::OutputRequirementOptionDirector
- processAll()
: gmx::AbstractOptionStorage
, gmx::OptionStorageTemplate< T >
- processFrame()
: gmx::SetVelocities
, gmx::SetAtoms
, gmx::SetBox
, gmx::SetTimeStep
, gmx::SetForces
, gmx::IOutputAdapter
, gmx::SetPrecision
, gmx::OutputSelector
, gmx::SetStartTime
- ProcessFrameConversion()
: gmx::ProcessFrameConversion
- processId()
: gmx::BinaryInformationSettings
- processSet()
: gmx::OptionStorageTemplate< T >
, gmx::AbstractOptionStorage
- processSetValues()
: gmx::OptionStorageTemplate< T >
- processValue()
: gmx::OptionStorageTemplateSimple< T >
- Profiling()
: gmx::Profiling
- programName()
: gmx::IProgramContext
, gmx::CommandLineProgramContext
- prop()
: AtomProperties
- ptype()
: SimulationParticle
- PullCoordExpressionParser()
: gmx::PullCoordExpressionParser
- push_back()
: InteractionList
, gmx::JClusterList
, gmx::FixedCapacityVector< typename, size_t >
, gmx::PackedJClusterList
- pushBack()
: gmx::ListOfLists< typename >
- pushBackListOfSize()
: gmx::ListOfLists< typename >
- putAtomsOnGrid()
: gmx::nonbonded_verlet_t
- putOnGrid()
: gmx::PairSearch