|
| CommandLineParser (gmx) | NbnxnPairlistCpuWork::IClusterData | NbnxnPairlistCpu | SetVelocities (gmx) |
| ConstraintsParam (gmx) | ICommandLineModule (gmx) | NbnxnPairlistCpuWork | SimulationAlgorithmSetupError (gmx) |
| AbstractAnalysisArrayData (gmx) | ConvertTprInfo (gmx) | ICommandLineOptionsModule (gmx) | NonbondedBenchmarkInfo (gmx) | SimulationGroups |
| AbstractAnalysisData (gmx) | CoulombCalculator (gmx) | ICommandLineOptionsModuleSettings (gmx) | NormalDistribution (gmx) | SimulationInputHandle |
| AbstractAverageHistogram (gmx) | CoulombCalculator< KernelCoulombType::EwaldAnalytical > (gmx) | IdentityFormatter (gmx) | NotImplementedError (gmx) | SimulationInstabilityError (gmx) |
| AbstractOption (gmx) | CoulombCalculator< KernelCoulombType::EwaldTabulated > (gmx) | IFrameConverter (gmx) |
| SimulationParticle |
| AbstractOptionSection (gmx) | CoulombCalculator< KernelCoulombType::RF > (gmx) | IListIterator | SimulationSignal (gmx) |
| AbstractOptionSectionHandle (gmx) |
| IListProxy | OptionInfo (gmx) | SimulationSignaller (gmx) |
| AbstractPlotModule (gmx) | IListRange | Options (gmx) | SimulatorConfig (gmx) |
| AmdPackedFloat3 | DataFileFinder (gmx) | InconsistentInputError (gmx) | OptionSection (gmx) | SimulatorEnv (gmx) |
| AnalysisArrayData (gmx) | DataFileInfo (gmx) | IndexGroup | OptionSectionHandle (gmx) | SimulatorStateData (gmx) |
| AnalysisData (gmx) | DataFileOptions (gmx) | InstallationPrefixInfo (gmx) | OptionTemplate (gmx) | StaticLog2 (gmx) |
| AnalysisDataAverageModule (gmx) | df_history_t | Int64Option (gmx) | OutputRequirementOptionDirector (gmx) | StaticLog2< 0 > (gmx) |
| AnalysisDataBinAverageModule (gmx) | DiagonalMasker (gmx) | Int64OptionInfo (gmx) | OutputRequirements (gmx) | StaticLog2< 1 > (gmx) |
| AnalysisDataDisplacementModule (gmx) | DiagonalMasker< nR, kernelLayout, DiagonalMaskType::JSizeEqualsISize > (gmx) | IntegerOption (gmx) | OutputSelector (gmx) | StringFormatter (gmx) |
| AnalysisDataFrameAverageModule (gmx) | DiagonalMasker< nR, kernelLayout, DiagonalMaskType::JSizeIsDoubleISize > (gmx) | IntegerOptionInfo (gmx) |
| StringOption (gmx) |
| AnalysisDataFrameHeader (gmx) | DiagonalMasker< nR, kernelLayout, DiagonalMaskType::JSizeIsHalfISize > (gmx) | InteractionListHandle | StringOptionInfo (gmx) |
| AnalysisDataFrameRef (gmx) | Grid::Dimensions (Nbnxm) | InteractiveMD (gmx) | PackedJClusterList | StringTable |
| AnalysisDataHandle (gmx) | DoubleOption (gmx) | InternalError (gmx) | PaddedVector (gmx) | StringTableEntry |
| AnalysisDataLifetimeModule (gmx) | DoubleOptionInfo (gmx) | InvalidInputError (gmx) | PaddingTraits (gmx::detail) | StringToEnumValueConverter (gmx) |
| AnalysisDataModuleParallel (gmx) |
| IonSwapping (gmx) | PairlistSets |
|
| AnalysisDataModuleSerial (gmx) | IOptionManager (gmx) | PairSearch |
| AnalysisDataPlotModule (gmx) | ElementNotFoundError (gmx) | IOptionsBehavior (gmx) | PairsearchWork | t_filenm |
| AnalysisDataPlotSettings (gmx) | EnergyFunctionProperties (Nbnxm) | IOptionsContainer (gmx) | ParallelConsistencyError (gmx) | t_mapping |
| AnalysisDataPointSetRef (gmx) | EnumOption (gmx) | IOptionsContainerWithSections (gmx) | UniformRealDistribution::param_type (gmx) | t_matrix |
| AnalysisDataSimpleHistogramModule (gmx) | EnumOptionInfo (gmx) | IOutputAdapter (gmx) | UniformIntDistribution::param_type (gmx) | t_mdatoms |
| AnalysisDataValue (gmx) | EqualCaseInsensitive (gmx) | IProgramContext (gmx) | TabulatedNormalDistribution::param_type (gmx) | t_oriresdata |
| AnalysisDataVectorPlotModule (gmx) | ExceptionInfo (gmx) | IRestraintPotential (gmx) | NormalDistribution::param_type (gmx) | t_pargs |
| AnalysisDataWeightedHistogramModule (gmx) | ExceptionInitializer (gmx) | IsSerializableEnum (gmx) | GammaDistribution::param_type (gmx) | t_pbc |
| AnalysisHistogramSettings (gmx) | ExponentialDistribution (gmx) | Range::iterator (gmx) | ExponentialDistribution::param_type (gmx) | t_state |
| AnalysisHistogramSettingsInitializer (gmx) |
| ITopologyProvider (gmx) | PartialDeserializedTprFile | t_xpmelmt |
| AnalysisNeighborhood (gmx) |
| PbcAiuc | TabulatedNormalDistribution (gmx) |
| AnalysisNeighborhoodPair (gmx) | FEPStateValue | PdbAtomEntry | TextLineWrapper (gmx) |
| AnalysisNeighborhoodPairSearch (gmx) | FileIOError (gmx) | JClusterList | PotentialPointData (gmx) | TextLineWrapperSettings (gmx) |
| AnalysisNeighborhoodPositions (gmx) | FileNameOption (gmx) |
| ProcessFrameConversion (gmx) | ThreeFry2x64 (gmx) |
| AnalysisNeighborhoodSearch (gmx) | FileNameOptionInfo (gmx) | Profiling (gmx) | ThreeFry2x64Fast (gmx) |
| APIError (gmx) | FileNameOptionManager (gmx) | LegacyEnumOption (gmx) | PullCoordExpressionParser (gmx) | ThreeFry2x64General (gmx) |
| ArrayRef (gmx) | FixedCapacityVector (gmx) | LegacyInput (gmx) |
| TimeUnitBehavior (gmx) |
| ArrayRefWithPadding (gmx) | FlagsTemplate (gmx) | LennardJonesCalculator (gmx) | TimeUnitManager (gmx) |
| AtomIterator | FloatOption (gmx) | LennardJonesCalculator< calculateEnergies, InteractionModifiers::ForceSwitch > (gmx) | Range (gmx) | ToleranceError (gmx) |
| AtomPair (gmx) | FloatOptionInfo (gmx) | LennardJonesCalculator< calculateEnergies, InteractionModifiers::PotSwitch > (gmx) | RangeError (gmx) | TopologyData (gmx) |
| AtomProperties | ForceHelperBuffers | LennardJonesCalculator< false, InteractionModifiers::PotShift > (gmx) | RangePartitioning (gmx) | TrajectoryAnalysisCommandLineRunner (gmx) |
| AtomProxy | ForeignLambdaTerms | LennardJonesCalculator< true, InteractionModifiers::PotShift > (gmx) | RepeatingOptionSection (gmx) | TrajectoryAnalysisModule (gmx) |
| AtomRange |
| ListOfLists (gmx) | RepeatingOptionSectionHandle (gmx) | TrajectoryAnalysisModuleData (gmx) |
| AtomsAdjacencyListElement | LocalSettleData |
| TrajectoryAnalysisSettings (gmx) |
|
| GammaDistribution (gmx) |
| TrajectoryFileOpener (gmx) |
| gmx_ana_index_t | Selection (gmx) | TrajectoryFrameWriter (gmx) |
| BalanceRegion | gmx_ana_indexmap_t | MembedHolder (gmx) | SelectionCollection (gmx) |
|
| BasicVector (gmx) | gmx_ana_pos_t | MissingElementConnectionError (gmx) | SelectionOption (gmx) |
| BenchmarkSystem (gmx) | gmx_cache_protect_t | ModularSimulatorError (gmx) | SelectionOptionBehavior (gmx) | UniformIntDistribution (gmx) |
| BooleanOption (gmx) | gmx_domdec_constraints_t | MoleculeBlockIndices | SelectionOptionInfo (gmx) | UniformRealDistribution (gmx) |
| BooleanOptionInfo (gmx) | gmx_enerdata_t | MtsLevel (gmx) | SelectionOptionManager (gmx) | UserInputError (gmx) |
| BoolType (gmx) | gmx_ffparams_t |
| SelectionPosition (gmx) |
|
| BoxDeformationHandle (gmx) | gmx_localtop_t | SelectionTopologyProperties (gmx) |
|
| gmx_molblock_t | NbnxmKernel | SetAtoms (gmx) | WarningHandler |
| gmx_moltype_t | nbnxn_cj_packed_t | SetBox (gmx) | WaterMolecule |
| CheckpointData (gmx) | gmx_nodecomm_t | nbnxn_cj_t | SetForces (gmx) | |
| CheckpointError (gmx) | gmx_sparsematrix | nbnxn_cycle_t | SetPrecision (gmx) | |
| CheckpointHeaderContents | GromacsException (gmx) | nbnxn_excl_t | SetStartTime (gmx) | |
| CommandLineHelpWriter (gmx) | GromppMtsOpts (gmx) | nbnxn_im_ei_t | SetTimeStep (gmx) | |
| CommandLineModuleSettings (gmx) |
| nbnxn_sci | SettleWaterTopology | |
| | | |
| IAnalysisDataModule (gmx) | | | |
| | | | |
1.8.5
