futil.h File Reference

#include <climits>
#include <cstdio>
#include <filesystem>
#include <string>
#include "gromacs/utility/basedefinitions.h"
#include "gromacs/utility/fileptr.h"

Include dependency graph for futil.h:

Description

Low-level wrappers for OS-specific file handling with some GROMACS customizations.

Typedefs
typedef int64_t	gmx_off_t
	GROMACS definition to use instead of off_t. More...

Functions
void	gmx_disable_file_buffering ()
	Turn off buffering for output files (which is default) for debugging purposes. More...
void	gmx_set_max_backup_count (int count)
	Enables backups with the specified number of maximum backups. More...
bool	gmx_fexist (const std::filesystem::path &fname)
	Check whether a path exists. More...
void	make_backup (const std::filesystem::path &file)
	Makes a backup of file if the file exists.
FILE *	gmx_ffopen (const std::filesystem::path &file, const char *mode)
	Opens a file, with GROMACS-specific additions. More...
int	gmx_ffclose (FILE *fp)
	Closes a file opened with gmx_ffopen(). More...
void	frewind (FILE *fp)
	Wraps rewind() for files opened with gmx_ffopen(). More...
int	gmx_fseek (FILE *stream, gmx_off_t offset, int whence)
	OS-independent 64-bit fseek(). More...
gmx_off_t	gmx_ftell (FILE *stream)
	OS-independent 64-bit ftell(). More...
int	gmx_truncate (const std::filesystem::path &filename, gmx_off_t length)
	OS-independent truncate(). More...
std::filesystem::path	gmx::findLibraryFile (const std::filesystem::path &filename, bool bAddCWD=true, bool bFatal=true)
	Finds full path for a library file. More...
FilePtr	gmx::openLibraryFile (const std::filesystem::path &filename, bool bAddCWD=true, bool bFatal=true)
	Opens a library file for reading in an RAII-style FILE handle. More...
FILE *	gmx_fopen_temporary (char *buf)
	Creates unique name for temp file (wrapper around mkstemp) and opens it. More...
void	gmx_tmpnam (char *buf)
	Creates unique name for temp file (wrapper around mkstemp). More...
void	gmx_file_rename (const std::filesystem::path &oldname, const std::filesystem::path &newname)
	OS-independent rename(). More...
int	gmx_file_copy (const std::filesystem::path &oldname, const std::filesystem::path &newname, bool copy_if_empty)
	Copies a file (data only) oldname to newname. More...
int	gmx_fsync (FILE *fp)
	OS-independent fsync(). More...
void	gmx_chdir (const std::filesystem::path &directory)
	OS-independent chdir(). More...
std::filesystem::path	gmx_getcwd ()
	OS-independent getcwd(). More...
const DataFileFinder &	gmx::getLibraryFileFinder ()
	Gets a finder for locating data files from share/top/. More...
void	gmx::setLibraryFileFinder (const DataFileFinder *finder)
	Sets a finder for location data files from share/top/. More...

Typedef Documentation

typedef int64_t gmx_off_t

GROMACS definition to use instead of off_t.

Function Documentation

void frewind

(

FILE *

fp

)

Wraps rewind() for files opened with gmx_ffopen().

A fatal error results if this function is called for a pipe (a compressed input file).

void gmx_chdir

(

const std::filesystem::path &

directory

)

OS-independent chdir().

Exits with a fatal error if changing the directory fails.

void gmx_disable_file_buffering

(

)

Turn off buffering for output files (which is default) for debugging purposes.

This only has effect on files opened with gmx_ffopen().

bool gmx_fexist

(

const std::filesystem::path &

fname

)

Check whether a path exists.

Returns

TRUE when fname exists.

Note that this returns TRUE even if fname is a directory instead of a file.

int gmx_ffclose

(

FILE *

fp

)

Closes a file opened with gmx_ffopen().

FILE* gmx_ffopen	(	const std::filesystem::path &	file,
		const char *	mode
	)

Opens a file, with GROMACS-specific additions.

If the file is in compressed format, opens a pipe which uncompresses the file on the fly. For this to work, gmx_ffclose() and frewind() should always be used for files opened with gmx_ffopen() instead of fclose() and rewind(). For compressed files, the file parameter should be passed without the compressed extension; if that file is not found, then a few compression extensions are tried. Creates a backup if a file opened for writing already exists before overwriting it. A fatal error results if the file cannot be opened, for whatever reason.

int gmx_file_copy	(	const std::filesystem::path &	oldname,
		const std::filesystem::path &	newname,
		bool	copy_if_empty
	)

Copies a file (data only) oldname to newname.

If newname exists, it is overwritten.

If copy_if_empty is false, the file won't be copied if it's empty.

void gmx_file_rename	(	const std::filesystem::path &	oldname,
		const std::filesystem::path &	newname
	)

OS-independent rename().

Renames/moves a file atomically, if the OS makes that available.

FILE* gmx_fopen_temporary

(

char *

buf

)

Creates unique name for temp file (wrapper around mkstemp) and opens it.

buf should be at least 7 bytes long

int gmx_fseek	(	FILE *	stream,
		gmx_off_t	offset,
		int	whence
	)

OS-independent 64-bit fseek().

Returns

0 when successful, or -1 (and set errno) in case of error.

int gmx_fsync

(

FILE *

fp

)

OS-independent fsync().

Only use this during checkpointing!

gmx_off_t gmx_ftell

(

FILE *

stream

)

OS-independent 64-bit ftell().

Returns

The current offset when successful, or -1 (and set errno) in case of error.

std::filesystem::path gmx_getcwd

(

)

OS-independent getcwd().

Exits with a fatal error if the call fails.

void gmx_set_max_backup_count

(

int

count

)

Enables backups with the specified number of maximum backups.

If count == 0, disables backups. If not called, this is the default. If count == -1, reads the count from an environment variable.

This is not currently thread-safe, as it is only called during initialization code.

void gmx_tmpnam

(

char *

buf

)

Creates unique name for temp file (wrapper around mkstemp).

buf should be at least 7 bytes long

int gmx_truncate	(	const std::filesystem::path &	filename,
		gmx_off_t	length
	)

OS-independent truncate().