- c -
- calculate()
: gmx::SurfaceAreaCalculator
- callGrompp()
: gmx::test::SimulationRunner
- callGromppOnThisRank()
: gmx::test::SimulationRunner
- callMdrun()
: gmx::test::SimulationRunner
- capacity()
: gmx::ArrayRef< T >
, gmx::ConstArrayRef< T >
- charge()
: gmx::SelectionPosition
- charges()
: gmx::Selection
- checkBoolean()
: gmx::test::TestReferenceChecker
- checkCompound()
: gmx::test::TestReferenceChecker
- checkDouble()
: gmx::test::TestReferenceChecker
- checkEmptySequence()
: gmx::test::TestReferenceChecker
- checkEntry()
: gmx::test::TestReferenceChecker::Impl
- checker()
: gmx::test::StringTestBase
- checkFileContents()
: gmx::test::StringTestBase
- checkFloat()
: gmx::test::TestReferenceChecker
- checkIndexGroup()
: gmx::SelectionTreeElement
- checkInt64()
: gmx::test::TestReferenceChecker
- checkInteger()
: gmx::test::TestReferenceChecker
- checkMdrun()
: gmx::test::BondedInteractionsTest
- checkModuleProperties()
: gmx::AnalysisDataModuleManager::Impl
- checkModuleProperty()
: gmx::AnalysisDataModuleManager::Impl
- checkOutputFiles()
: gmx::test::CommandLineTestHelper
, gmx::test::CommandLineTestBase
- checkPresent()
: gmx::test::TestReferenceChecker
- checkReal()
: gmx::test::TestReferenceChecker
- checkRealFromString()
: gmx::test::TestReferenceChecker
- checkRedirectedFiles()
: gmx::test::TestFileOutputRedirector
- checkRedirectedOutput()
: gmx::test::CommandLineModuleManagerTestBase
- checkReferencePoints()
: gmx::test::MockAnalysisDataModule::Impl
- checkSequence()
: gmx::test::TestReferenceChecker
- checkSequenceArray()
: gmx::test::TestReferenceChecker
- checkSequenceCompound()
: gmx::test::TestReferenceChecker
- checkSession()
: gmx::test::InteractiveTestHelper
- checkStream()
: gmx::test::ITextBlockMatcher
- checkString()
: gmx::test::TestReferenceChecker
- checkText()
: gmx::test::StringTestBase
- checkTextBlock()
: gmx::test::TestReferenceChecker
- checkUInt64()
: gmx::test::TestReferenceChecker
- checkUnsortedAtoms()
: gmx::SelectionTreeElement
- checkValue()
: gmx::test::TestReferenceChecker
- checkVector()
: gmx::test::TestReferenceChecker
- child()
: gmx::anonymous_namespace{exceptions.cpp}::ErrorMessage
- clear()
: gmx::AnalysisDataFrameLocalDataSetHandle< ValueType >
, gmx::AnalysisDataFrameLocalDataHandle< ValueType >
, gmx::TextTableFormatter
, gmx::OptionStorageTemplate< T >
, gmx::FlagsTemplate< FlagType >
, gmx::MessageStringCollector
, gmx::AnalysisDataValue
- clearAll()
: gmx::FlagsTemplate< FlagType >
- clearFlag()
: gmx::AbstractOption
, gmx::AbstractOptionStorage
- clearFrame()
: gmx::internal::AnalysisDataStorageFrameData
- clearSet()
: gmx::AbstractOptionStorage
, gmx::OptionStorageTemplate< T >
- clearSymbolTable()
: gmx::SelectionCollection::Impl
- clone()
: gmx::AbstractAverageHistogram
- close()
: gmx::StandardInputStream
, gmx::TextInputFile
, gmx::TextOutputFile
, gmx::StringOutputStream
, gmx::StringInputStream
, gmx::TextReader
, gmx::TextInputStream
, gmx::TextOutputStream
, gmx::TextWriter
- CMainCommandLineModule()
: gmx::anonymous_namespace{cmdlinemodulemanager.cpp}::CMainCommandLineModule
- columnCount()
: gmx::AbstractAnalysisData
, gmx::AnalysisDataPointSetRef
, gmx::AnalysisDataStorageFrame
, gmx::AnalysisDataFrameAverager
, gmx::test::AnalysisDataTestInput
- ColumnData()
: gmx::TextTableFormatter::Impl::ColumnData
- columnData()
: gmx::TextTableFormatter::Impl
- CommandLine()
: gmx::test::CommandLine
- commandLine()
: gmx::CommandLineProgramContext
, gmx::anonymous_namespace{programcontext.cpp}::DefaultProgramContext
, gmx::IProgramContext
, gmx::test::CommandLineTestBase
, gmx::test::anonymous_namespace{testinit.cpp}::TestProgramContext
- CommandLine()
: gmx::test::CommandLine
- CommandLineHelpContext()
: gmx::CommandLineHelpContext
- CommandLineHelpModule()
: gmx::CommandLineHelpModule
- CommandLineHelpWriter()
: gmx::CommandLineHelpWriter
- CommandLineModuleGroup()
: gmx::CommandLineModuleGroup
- CommandLineModuleGroupData()
: gmx::CommandLineModuleGroupData
- CommandLineModuleManager()
: gmx::CommandLineModuleManager
- CommandLineParser()
: gmx::CommandLineParser
- CommandLineProgramContext()
: gmx::CommandLineProgramContext
- CommandLineTestHelper()
: gmx::test::CommandLineTestHelper
- CommandsHelpTopic()
: gmx::anonymous_namespace{cmdlinehelpmodule.cpp}::CommandsHelpTopic
- commitValues()
: anonymous_namespace{abstractoptionstorage.cpp}::MockOptionStorage
, gmx::OptionStorageTemplate< T >
- compareSimd4RealEq()
: gmx::test::Simd4Test
- compareSimd4RealUlp()
: gmx::test::Simd4Test
- compareSimdInt32()
: gmx::test::SimdTest
- compareSimdRealEq()
: gmx::test::SimdTest
- compareSimdRealUlp()
: gmx::test::SimdTest
- compareVectorEq()
: gmx::test::SimdBaseTest
- compareVectorRealUlp()
: gmx::test::SimdBaseTest
- compile()
: gmx::SelectionCollection
, gmx::SelectionCompiler
- completeDefaultFileName()
: gmx::FileNameOptionManager
- completeFileName()
: gmx::FileNameOptionManager
- computeAverageCoveredFraction()
: gmx::internal::SelectionData
- computeStorageLocation()
: gmx::internal::AnalysisDataStorageImpl
- consoleOptionsFormatter()
: gmx::HelpWriterContext::Impl::SharedState
- ConstArrayRef()
: gmx::ConstArrayRef< T >
- constArrayRefFromArray()
: gmx::ConstArrayRef< T >
- constArrayRefFromPointers()
: gmx::ConstArrayRef< T >
- constArrayRefFromVector()
: gmx::ConstArrayRef< T >
- construct()
: gmx::AlignedAllocator< T >
- convertOptionValue()
: gmx::SelectionOptionManager
- convertValue()
: gmx::OptionStorageTemplate< T >
, gmx::AbstractOptionStorage
- coordinates()
: gmx::Selection
- copyContents()
: gmx::AbstractAnalysisArrayData
- copyright()
: gmx::BinaryInformationSettings
- copyValues()
: gmx::anonymous_namespace{pargs.cpp}::OptionsAdapter
- count()
: gmx::SelectionOptionManager::Impl::SelectionRequest
, gmx_ana_pos_t
- coveredFraction()
: gmx::Selection
- create()
: gmx::SelectionParserParameter
, gmx::anonymous_namespace{cmdlineprogramcontext.cpp}::DefaultExecutableEnvironment
, gmx::SelectionParserParameter
- createCalculation()
: gmx::PositionCalculationCollection::Impl
, gmx::PositionCalculationCollection
- createCalculationFromEnum()
: gmx::PositionCalculationCollection
- createEmpty()
: gmx::SelectionLocation
- createEntry()
: gmx::test::TestReferenceChecker::Impl
- createExpr()
: gmx::SelectionParserValue
- createFromExpression()
: gmx::SelectionParserParameter
- createInteger()
: gmx::SelectionParserValue
- createIntegerRange()
: gmx::SelectionParserValue
- createList()
: gmx::SelectionParserParameter
, gmx::SelectionParserValue
- createMatcher()
: gmx::test::ITextBlockMatcherSettings
, gmx::test::NoTextMatch
, gmx::test::XvgMatch
, gmx::test::ExactTextMatch
- createModule()
: gmx::test::TrajectoryAnalysisModuleTestFixture< ModuleInfo >
, gmx::ICommandLineOptionsModule
, gmx::test::AbstractTrajectoryAnalysisModuleTestFixture
, gmx::TrajectoryAnalysisCommandLineRunner
- createModuleHelpTopic()
: gmx::CommandLineHelpModule
- createPosition()
: gmx::SelectionParserValue
- createReal()
: gmx::SelectionParserValue
- createRealRange()
: gmx::SelectionParserValue
- createStorage()
: gmx::AbstractOption
- createString()
: gmx::SelectionParserValue
- currentFrame()
: gmx::AnalysisDataStorage
- currentPosition()
: gmx::analysismodules::anonymous_namespace{angle.cpp}::AnglePositionIterator
- currentSection()
: gmx::OptionsAssigner::Impl
- currentSelection()
: gmx::analysismodules::anonymous_namespace{angle.cpp}::AnglePositionIterator
- currentTopic()
: gmx::HelpManager::Impl
- currentTopicAsString()
: gmx::HelpManager::Impl
- currentValuesSelected()
: gmx::analysismodules::anonymous_namespace{angle.cpp}::AnglePositionIterator