- r -
- range()
: gmx::AnalysisHistogramSettingsInitializer
- rbegin()
: gmx::ArrayRef< T >
, gmx::ConstArrayRef< T >
, gmx::ArrayRef< T >
- RdfModuleData()
: gmx::analysismodules::anonymous_namespace{rdf.cpp}::RdfModuleData
- readAll()
: gmx::TextReader
- readFileToString()
: gmx::TextReader
- readLine()
: gmx::StandardInputStream
, gmx::TextInputFile
, gmx::StringInputStream
, gmx::TextReader
, gmx::TextInputStream
- readLineTrimmed()
: gmx::TextReader
- readNextFrame()
: gmx::test::EnergyFrameReader
, gmx::test::TrajectoryFrameReader
, gmx::TrajectoryAnalysisRunnerCommon
- readWriteFlags()
: gmx::FileNameOption
- redirectStderrToDevNull()
: gmx::test::IntegrationTestFixture
- redirectStdoutToDevNull()
: gmx::test::IntegrationTestFixture
- redirectStringToStdin()
: gmx::test::IntegrationTestFixture
- refId()
: gmx::SelectionPosition
- refIds()
: gmx::Selection
- refIndex()
: gmx::AnalysisNeighborhoodPair
- refreshMassesAndCharges()
: gmx::internal::SelectionData
- refreshName()
: gmx::internal::SelectionData
- refreshValues()
: gmx::internal::EnumIndexStoreInterface
, gmx::internal::EnumIndexStore< EnumType >
, gmx::OptionStorageTemplate< T >
- Regex()
: gmx::Regex
- registerAnalysisDataset()
: gmx::TrajectoryAnalysisModule
- registerBasicDataset()
: gmx::TrajectoryAnalysisModule
- registerModule()
: gmx::CommandLineModuleManager
, gmx::TrajectoryAnalysisCommandLineRunner
- registerModuleDirect()
: gmx::ICommandLineOptionsModule
- registerModuleFactory()
: gmx::ICommandLineOptionsModule
- registerOption()
: gmx::SelectionOptionManager
- registerSubTopic()
: gmx::AbstractCompositeHelpTopic
- relativeToleranceAsFloatingPoint()
: gmx::test::FloatingPointTolerance
- relativeToleranceAsPrecisionDependentUlp()
: gmx::test::FloatingPointTolerance
- relativeToleranceAsUlp()
: gmx::test::FloatingPointTolerance
- release()
: gmx::scoped_cptr< T, D >
- removeCalculation()
: gmx::PositionCalculationCollection::Impl
- removeFiles()
: gmx::test::TestFileManager::Impl
- removeTerminatingLineFeed()
: gmx::anonymous_namespace{exceptions.cpp}::MessageWriterString
- rend()
: gmx::ArrayRef< T >
, gmx::ConstArrayRef< T >
- replaceLinks()
: gmx::HelpWriterContext::Impl
- requestOptionDelayedParsing()
: gmx::SelectionOptionManager
- RequestsClearer()
: gmx::SelectionOptionManager::Impl::RequestsClearer
- requestStorage()
: gmx::AbstractAnalysisData
, gmx::AnalysisDataStorage
- requestStorageInternal()
: gmx::AbstractAnalysisData
- requestUnsetRequiredOptions()
: gmx::SelectionOptionManager::Impl
- required()
: gmx::OptionTemplate< T, U >
- requiresIndexGroups()
: gmx::SelectionCollection
, gmx::SelectionTreeElement
- requiresTopology()
: gmx::SelectionCollection
- resampleDoubleBinWidth()
: gmx::AbstractAverageHistogram
- reserve()
: anonymous_namespace{evaluate.cpp}::MempoolGroupReserver
, anonymous_namespace{evaluate.cpp}::MempoolSelelemReserver
- reserveSpace()
: gmx::internal::EnumIndexStoreInterface
, gmx::internal::EnumIndexStore< EnumType >
- reset()
: gmx::ExponentialDistribution< RealType >
, gmx::GammaDistribution< RealType >
, gmx::NormalDistribution< RealType >
, gmx::TabulatedNormalDistribution< RealType, tableBits >
, gmx::UniformRealDistribution< RealType >
, gmx::AnalysisNeighborhoodSearch
, gmx::PrivateImplPointer< Impl >
, gmx::scoped_cptr< T, D >
, gmx::UniformIntDistribution< IntType >
- resolveExternalGroups()
: gmx::SelectionCollection::Impl
- resolveIndexGroupReference()
: gmx::SelectionTreeElement
- restart()
: gmx::ThreeFry2x64General< rounds, internalCounterBits >
- restoreOriginalPositions()
: gmx::internal::SelectionData
- result()
: gmx::anonymous_namespace{helpwritercontext.cpp}::WrapperToString
, gmx::anonymous_namespace{helpwritercontext.cpp}::WrapperToVector
, gmx::anonymous_namespace{exceptions.cpp}::MessageWriterString
- rootChecker()
: gmx::test::CommandLineTestBase
, gmx::test::TestReferenceData
- rootElement()
: gmx::internal::SelectionData
- RootHelpTopic()
: gmx::anonymous_namespace{cmdlinehelpmodule.cpp}::RootHelpTopic
- rotateBuffer()
: gmx::internal::AnalysisDataStorageImpl
- roundRange()
: gmx::AnalysisHistogramSettingsInitializer
- rowCount()
: gmx::AbstractAnalysisArrayData
- RstParagraphIterator()
: gmx::RstParagraphIterator
- run()
: gmx::anonymous_namespace{cmdlinemodulemanager.cpp}::CMainCommandLineModule
, gmx::ICommandLineModule
, gmx::CommandLineModuleManager
, gmx::ICommandLineOptionsModule
, anonymous_namespace{legacymodules.cpp}::ObsoleteToolModule
, gmx::CommandLineHelpModule
- runAsMain()
: gmx::TrajectoryAnalysisCommandLineRunner
, gmx::ICommandLineOptionsModule
- runAsMainCMain()
: gmx::CommandLineModuleManager
- runAsMainCMainWithSettings()
: gmx::CommandLineModuleManager
- runAsMainSingleModule()
: gmx::CommandLineModuleManager
- runExitsNormallyTest()
: gmx::test::MultiSimTest
- runFirstMdrun()
: gmx::test::TerminationHelper
- runMaxhTest()
: gmx::test::MultiSimTest
- runModuleDirect()
: gmx::test::CommandLineTestHelper
- runModuleFactory()
: gmx::test::CommandLineTestHelper
- runSecondMdrun()
: gmx::test::TerminationHelper
- runTest()
: gmx::test::AbstractTrajectoryAnalysisModuleTestFixture
, anonymous_namespace{grompp.cpp}::GromppTest
, anonymous_namespace{shake.cpp}::ShakeTest
, gmx::test::MdrunComparisonFixture