Here is a list of all documented class members with links to the class documentation for each member:
- s -
- sampleCount()
: gmx::AnalysisDataAverageModule
- scaleAll()
: gmx::AbstractAverageHistogram
- scaleAllByVector()
: gmx::AbstractAverageHistogram
- scaleSingle()
: gmx::AbstractAverageHistogram
- scoped_cptr()
: gmx::scoped_cptr< T, D >
- SearchMode
: gmx::AnalysisNeighborhood
- seed()
: gmx::ThreeFry2x64General< rounds, internalCounterBits >
- selectDataSet()
: gmx::AnalysisDataHandle
, gmx::AnalysisDataStorageFrame
- selected()
: gmx::SelectionPosition
- Selection()
: gmx::Selection
- selectionCollection()
: gmx::AnalysisDataPlotSettings
- SelectionCollection()
: gmx::SelectionCollection
- SelectionCompiler
: gmx::SelectionCollection
- SelectionEvaluator
: gmx::SelectionCollection
- SelectionFileOption()
: gmx::SelectionFileOption
- SelectionFileOptionInfo()
: gmx::SelectionFileOptionInfo
- SelectionOption()
: gmx::SelectionOption
- SelectionOptionBehavior()
: gmx::SelectionOptionBehavior
- SelectionOptionInfo()
: gmx::SelectionOptionInfo
- SelectionOptionManager()
: gmx::SelectionOptionManager
- SelectionOptionStorage
: gmx::Selection
, gmx::SelectionOption
, gmx::SelectionOptionManager
- SelectionPosition()
: gmx::SelectionPosition
- selectionText()
: gmx::Selection
- SelectionTypeOption
: gmx::SelectionCollection
- selectSingleFromArray()
: gmx::AnalysisNeighborhoodPositions
- set()
: gmx::FlagsTemplate< FlagType >
- setAcceptBooleanNoPrefix()
: gmx::OptionsAssigner
- setAverageDataSets()
: gmx::AnalysisDataAverageModule
- setColumnCount()
: gmx::AbstractAnalysisData
, gmx::AnalysisData
, gmx::AbstractAnalysisArrayData
, gmx::test::AnalysisDataTestInput
- setColumnFirstLineOffset()
: gmx::TextTableFormatter
- setContinuationChar()
: gmx::TextLineWrapperSettings
- setCumulative()
: gmx::AnalysisDataLifetimeModule
- setCutoff()
: gmx::AnalysisNeighborhood
- setDataSetCount()
: gmx::AbstractAnalysisData
, gmx::AnalysisData
- setDebugLevel()
: gmx::SelectionCollection
- setDefaultNiceLevel()
: gmx::CommandLineModuleSettings
- setDefaultTolerance()
: gmx::test::TestReferenceChecker
- setDefaultValue()
: gmx::OptionStorageTemplate< T >
- setDefaultValueIfSet()
: gmx::OptionStorageTemplate< T >
- setDescription()
: gmx::AbstractOption
- setDisplayName()
: gmx::CommandLineProgramContext
- setDynamicMask()
: gmx::SelectionOptionInfo
- setError()
: gmx::AnalysisDataValue
- setErrorsAsSeparateColumn()
: gmx::AbstractPlotModule
- setEvaluateForces()
: gmx::Selection
, gmx::SelectionOptionInfo
- setEvaluateVelocities()
: gmx::Selection
, gmx::SelectionOptionInfo
- setFileName()
: gmx::AbstractPlotModule
- setFirstColumnIndent()
: gmx::TextTableFormatter
- setFirstLineIndent()
: gmx::TextLineWrapperSettings
- setFlag()
: gmx::AbstractOptionStorage
, gmx::TrajectoryAnalysisSettings
, gmx::AbstractOption
- setFlags()
: gmx::TrajectoryAnalysisSettings
- setFoldLastColumnToNextLine()
: gmx::TextTableFormatter
- setFrameFlags()
: gmx::TrajectoryAnalysisSettings
- setGlobalOutputTempDirectory()
: gmx::test::TestFileManager
- setHelpText()
: gmx::CommandLineHelpWriter
, gmx::ICommandLineOptionsModuleSettings
, gmx::TrajectoryAnalysisSettings
- setIndent()
: gmx::TextLineWrapperSettings
- setIndexGroups()
: gmx::SelectionCollection
- setInfo()
: gmx::GromacsException
- setInputDataDirectory()
: gmx::test::TestFileManager
- setInputFile()
: gmx::test::CommandLineTestBase
- setInputFileContents()
: gmx::test::CommandLineTestHelper
, gmx::test::CommandLineTestBase
- setInputLines()
: gmx::test::InteractiveTestHelper
- setInputRedirector()
: gmx::FileNameOptionManager
- setKeepFinalSpaces()
: gmx::TextLineWrapperSettings
- setKnownIssues()
: gmx::CommandLineHelpWriter
- setLastNewline()
: gmx::test::InteractiveTestHelper
- setLegend()
: gmx::AbstractPlotModule
- setLineLength()
: gmx::TextLineWrapperSettings
- setMaxTime()
: gmx::AnalysisDataDisplacementModule
- setMaxValueCount()
: gmx::AbstractOptionStorage
- setMinValueCount()
: gmx::AbstractOptionStorage
- setMode()
: gmx::AnalysisNeighborhood
- setModuleDisplayName()
: gmx::CommandLineHelpContext
- setMSDHistogram()
: gmx::AnalysisDataDisplacementModule
- setMultipoint()
: gmx::AbstractAnalysisData
, gmx::AnalysisData
- setOmitX()
: gmx::AbstractPlotModule
- setOnlyAtoms()
: gmx::SelectionOptionInfo
- setOnlyStatic()
: gmx::SelectionOptionInfo
- setOptionsModuleSettings()
: gmx::TrajectoryAnalysisSettings
- setOriginalId()
: gmx::Selection
- setOutputFile()
: gmx::test::CommandLineTestHelper
, gmx::test::CommandLineTestBase
- setOutputPosType()
: gmx::SelectionCollection
- setOutputRedirector()
: gmx::CommandLineModuleManager
- setOutputTempDirectory()
: gmx::test::TestFileManager
- setPBC()
: gmx::TrajectoryAnalysisSettings
- setPlainOutput()
: gmx::AbstractPlotModule
- setPoint()
: gmx::AnalysisDataHandle
- setPoints()
: gmx::AnalysisDataHandle
- setQuiet()
: gmx::CommandLineModuleManager
- setReferencePosType()
: gmx::SelectionCollection
- setReplacement()
: gmx::HelpWriterContext
- setRmPBC()
: gmx::TrajectoryAnalysisSettings
- setRowCount()
: gmx::AbstractAnalysisArrayData
- setScaleFactor()
: gmx::DoubleOptionInfo
, gmx::FloatOptionInfo
- setSearchPathFromEnv()
: gmx::DataFileFinder
- setSelectionCollection()
: gmx::AnalysisDataPlotSettings
- setSettings()
: gmx::AbstractPlotModule
- setShowHidden()
: gmx::CommandLineHelpContext
- setSingleModule()
: gmx::CommandLineModuleManager
- setStoreIsSet()
: gmx::AbstractOption
- setSubtitle()
: gmx::AbstractPlotModule
- setTimeUnit()
: gmx::AnalysisDataPlotSettings
, gmx::TimeUnitManager
, gmx::TimeUnitBehavior
- setTimeUnitFromEnvironment()
: gmx::TimeUnitBehavior
- setTimeUnitStore()
: gmx::TimeUnitBehavior
- settings()
: gmx::AbstractAverageHistogram
, gmx::AnalysisDataSimpleHistogramModule
, gmx::AnalysisDataBinAverageModule
, gmx::TextLineWrapper
, gmx::AnalysisDataWeightedHistogramModule
- setTitle()
: gmx::AbstractPlotModule
- setTopology()
: gmx::SelectionCollection
- setTopologyExclusions()
: gmx::AnalysisNeighborhood
- setupArrayData()
: gmx::test::AnalysisDataTestFixture
- setupDataObject()
: gmx::test::AnalysisDataTestFixture
- setValue()
: gmx::AnalysisDataValue
, gmx::AnalysisDataStorageFrame
- setValueCount()
: gmx::AbstractOption
, gmx::SelectionOptionInfo
- setVector()
: gmx::AbstractOption
- setWriteMask()
: gmx::AnalysisDataVectorPlotModule
- setWriteNorm()
: gmx::AnalysisDataVectorPlotModule
- setWriteX()
: gmx::AnalysisDataVectorPlotModule
- setWriteY()
: gmx::AnalysisDataVectorPlotModule
- setWriteZ()
: gmx::AnalysisDataVectorPlotModule
- setXAxis()
: gmx::AbstractAnalysisArrayData
- setXAxisIsTime()
: gmx::AbstractPlotModule
- setXAxisValue()
: gmx::AbstractAnalysisArrayData
- setXFormat()
: gmx::AbstractPlotModule
- setXLabel()
: gmx::AbstractPlotModule
- setXYMode()
: gmx::AnalysisNeighborhood
- setYFormat()
: gmx::AbstractPlotModule
- setYLabel()
: gmx::AbstractPlotModule
- setZero
: gmx::SimdSetZeroProxyInternal
- shared
: gmx::HardwareTopology::Cache
- shellCompletionWriter()
: gmx::CommandLineHelpContext
- shortDescription()
: gmx::ICommandLineModule
- showHidden()
: gmx::CommandLineHelpContext
- sigma3A
: t_mdatoms
- sigma3B
: t_mdatoms
- sigmaA
: t_mdatoms
- sigmaB
: t_mdatoms
- signsDiffer()
: gmx::test::FloatingPointDifference
- Simd4DBool()
: gmx::Simd4DBool
- Simd4Double()
: gmx::Simd4Double
- Simd4FBool()
: gmx::Simd4FBool
- Simd4Float()
: gmx::Simd4Float
- SimdDBool()
: gmx::SimdDBool
- SimdDIBool()
: gmx::SimdDIBool
- SimdDInt32()
: gmx::SimdDInt32
- SimdDouble()
: gmx::SimdDouble
- SimdFBool()
: gmx::SimdFBool
- SimdFIBool()
: gmx::SimdFIBool
- SimdFInt32()
: gmx::SimdFInt32
- SimdFloat()
: gmx::SimdFloat
- simdInternal_
: gmx::SimdDouble
, gmx::Simd4FBool
, gmx::SimdFBool
, gmx::Simd4Double
, gmx::Simd4Float
, gmx::SimdDBool
, gmx::SimdDIBool
, gmx::SimdFloat
, gmx::SimdFIBool
, gmx::Simd4DBool
, gmx::SimdDInt32
, gmx::SimdFInt32
- SimulationInstabilityError()
: gmx::SimulationInstabilityError
- size
: gmx::HardwareTopology::Cache
, gmx::test::AnalysisDataTestInputPointSet
, gmx::ConstArrayRef< T >
, gmx::ArrayRef< T >
- size_type
: gmx::ArrayRef< T >
, gmx::ConstArrayRef< T >
, gmx::AlignedAllocator< T >
- skipRemainingPairsForTestPosition()
: gmx::AnalysisNeighborhoodPairSearch
- skipUnknown()
: gmx::CommandLineParser
- socketRankInMachine
: gmx::HardwareTopology::LogicalProcessor
, gmx::CpuInfo::LogicalProcessor
- sockets
: gmx::HardwareTopology::Machine
- sqrt_c6A
: t_mdatoms
- sqrt_c6B
: t_mdatoms
- standardDeviation()
: gmx::AnalysisDataAverageModule
- standardError()
: gmx::TextOutputFile
- standardOutput()
: gmx::IFileOutputRedirector
, gmx::test::TestFileOutputRedirector
, gmx::TextOutputFile
- start()
: gmx::OptionsAssigner
, gmx::AnalysisHistogramSettingsInitializer
- start_space_search
: gmx_ga2la_t
- startContext()
: gmx::MessageStringCollector
- startData()
: gmx::AnalysisData
- startDataStorage()
: gmx::AnalysisDataStorage
- startFrame()
: gmx::AnalysisDataStorage
, gmx::AnalysisDataHandle
, gmx::AnalysisDataStorage
- startFrames()
: gmx::TrajectoryAnalysisModule
- startOption()
: gmx::OptionsAssigner
- startPairSearch()
: gmx::AnalysisNeighborhoodSearch
- startParallelDataStorage()
: gmx::AnalysisDataStorage
- startSet()
: gmx::AbstractOptionStorage
- startSource()
: gmx::AbstractOptionStorage
- startSubSection()
: gmx::OptionsAssigner
- stddev()
: gmx::NormalDistribution< RealType >
, gmx::TabulatedNormalDistribution< RealType, tableBits >::param_type
, gmx::NormalDistribution< RealType >::param_type
, gmx::TabulatedNormalDistribution< RealType, tableBits >
- stepping()
: gmx::CpuInfo
- store()
: gmx::OptionTemplate< T, U >
- storeCount()
: gmx::OptionTemplate< T, U >
- storeIsSet()
: gmx::OptionTemplate< T, U >
- storeVector()
: gmx::OptionTemplate< T, U >
- StringFormatter()
: gmx::StringFormatter
- StringInputStream()
: gmx::StringInputStream
- StringOption()
: gmx::StringOption
- StringOptionInfo()
: gmx::StringOptionInfo
- StringOptionStorage
: gmx::StringOption
- substituteMarkupAndWrapToString()
: gmx::HelpWriterContext
- substituteMarkupAndWrapToVector()
: gmx::HelpWriterContext
- SupportLevel
: gmx::CpuInfo
, gmx::HardwareTopology
- supportLevel()
: gmx::CpuInfo
, gmx::HardwareTopology
- swap()
: gmx::ArrayRef< T >
, gmx::ConstArrayRef< T >